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Monster Media 1994 #1
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monster
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FREQ_QA
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00000143.TXT
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1994-03-14
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&ï║
ëåv ëûx Ç─ï≡ëû~ Ç─ï°ëûp Ç─ëår ëût ╗8ÄΩ9ë₧■îå
■+└&ëG&ëë╛n Ä┌9&9ptHÄ▄9&9vt=╕PPÄ▐9& 6û& 6öÜ`┘â─╕æ%PÄ▐9& 6û& 6öÜZ┘â─ÜT┘δ╕╡%PÜ|α â─╗TÄ:ë₧■îå■&╟╕╨PÜ╒ â─ëF∞ëVε╕pPÜ╒ â─ëF≡ëV≥+└ëF÷ëF⌠èå{ ■å{ <vΘvâ~uZ 6`# 6^#╕└%P ╢~ VÜααâ─╕P ╢~ VÜ"αâ─P ╢~ VÜJ] hive servers. Check with Archie.
Commercial:
Vista Pro 3.0 for the Amiga from Virtual Reality Labs -- list price
is about $100. Their address is:
VRL
2341 Ganador court
San Luis Obispo,
CA 93401
Telephone or FAX (805) 545-8515
Scenery Animator 4 (also for the Amiga) is of the same caliber with
Vista Pro 3, plus animation support (VistaPro needs separate programs in
order to make animations).
Check with:
Natural Graphics
P.O. Box 1963
Raklin, CA 95677
Phone (916) 62easonable
quality vector data distributed on four CD-ROMS. .... includes coastlines,
rivers, roads, railrays, airports,cities, towns, spot elevations, and depths,
and over 100,000 place names."
It is ISO9660 compatible and only $200.00 available from:
U.S. Geological Survey
P.O. Box 25286
Denver Federal Center
Denver, CO 80225
Digital Distribution Services
Energy, Mines, and Resources Canada
615 Booth Street
Ottawa, ON
K1A 0E9 Canada
Director General of Military Survey
(Survey 3)
Elmwood Avenue
Feltham, Middlesex
TW13 7AH United Kingdom
Director of Survey, Australian Army
Department of Defense
Campbell Park Offices (CP2-4-24)
Campbell ACT 2601 Australia
Fractal Landscape Generators
----------------------------
Public Domain:
Many people have written fractal landscape generators. for example
for the Mac some of these generators were written by
pdbourke@ccu1.aukuni.ac.nz (Paul D. Bourke).
Many of the programs are available from the FTP sites and mail
arc each one in four file formats: Targa, TIFF, PCX, and IFF-24.
Images are real-world textures, including metal, stone, plants, space, wood,
textile, marble, special effects, and much more.
Pricing is as follows:
PRO-60 #1 and #2 on Amiga disk: $99.95 each
PRO-100 #1 on CD-ROM: $199.95
There is a special price for INTERNET users: PRO-100 #1 CD-ROM for $100.00.
All three of the above collections are available direct by mail from the
address and telephone number shown below.
Texture City
3203 Overland Ave. # 6157
Los Angeles, CA 90034
(310) 836-9224
==========================================================================
13. Introduction to rendering algorithms
========================================
a. Ray-Tracing:
---------------
I assume you have a general understanding of Computer Graphics. No? Then read
some of the books that the FAQ contains. For Ray-Tracing, I would
suggest:
An Introduction to Ray Tracing, Andrew Glassner (ed.), Academic Press
1989, ISBN 0-12-286160-4
Note that I have not read the book, but I feel that you can't be wrong
using his book. An errata list was posted in comp.graphics by Eric Haines
(erich@eye.com)
There's a more concise reference also:
Roman Kuchkuda , UNC @ Chapel Hill: "An Introduction to Ray Tracing", in
"Theoretical Foundations for Computer Graphics and CAD", ed. R.A.E.Earnshaw,
NATO AS, Vol. F-40., pp. 1039-1060. Printed by Springer-Verlag, 1988.
It contains code for a small, but fundamentally complete ray-tracer.
b. Z-buffer (depth-buffer)
--------------------------
A good reference is:
_Procedural Elements for Computer Graphics_, David F. Rogers,
McGraw-Hill, New York, 1985, pages 265-272 and 280-284.
c. Others:
----------
???
[ More info is needed -- nfotis ]
========================================================================
14. Where can I find the geometric data for the:
================================================
a. Teapot ?
-----------
"Displays on Display" column of IEEE CG&A Jan '87 has the whole
story about origin of the Martin Newell's teapot. The article also has
the bezier patch model and a Pascal program to display the wireframe
model of the teapot.
IEEE CG&A Sep '87 in Jim Blinn's column "Jim Blinn's Corner" describes
an another way to model the teapot; Bezier curves with rotations for
example are used.
The OFF and SPD packages have these objects, so you're advised to get
them to avoid typing the data yourself. The OFF data is triangles at
a specific resolution (around 8x8[x4 triangles] meshing per patch).
The SPD package provides the spline patch descriptions and performs a
tessellation at any specified resolution.
b. Space Shuttle ?
------------------
Tolis Lerios <tolis@nova.stanford.edu> has built a list of Space Shuttle
datafiles. Here's a summary (From his sci.space list):
model1:
A modified version of the newsgroup model (model2)
406 vertices (296 useful, i.e. referred to in the polygon descriptions.)
389 polygons (233 3-vertex, 146 4-vertex, 7 5-vertex, 3 6-vertex).
Payload doors non-existent.
Units: unknown.
Simon Marshall (S.Marshall@sequent.cc.hull.ac.uk) has a copy. He
said there is no proprietary information associated with it.
model2:
The newsgroup model, in OFF format. You can find it in
gondwana.ecr.mu.oz.au , file pub/off/objects/shuttle.geo
hanauma.stanford.edu , /pub/graphics/Comp.graphics/objects/shuttle.data
model3:
The triangles' model.
This model is stored in several files, each defining portions of the model.
Greg Henderson (henders@infonode.ingr.com) has a copy. He did
not mention any restriction on the model's distribution.
model4:
The NASA model.
The file starts off with a header line containing three real numbers,
defining the offsets used by Lockheed in their simulations:
<x offset> <y offset> <z offset>
From then on, the file consists of a sequence of polygon descriptions
3473 vertices.
2748 polygons (407 3-vertex, 2268 4-vertex, 33 5-vertex, 14 6-vertex,
10 7-vertex, 8 8-vertex, 8 12-vertex, 2 13-vertex, 2 15-vertex,
17 16-vertex, 2 17-vertex, 2 18-vertex, 3 19-vertex, 8 24-vertex).
Payload doors closed.
Units: inches.
Jon Berndt (jon@l14h11.jsc.nasa.gov) seems to be responsible for the model
Proprietary info: unknown
model5:
The old shuttle model.
The file consists of a sequence of polygon descriptions.
104 vertices.
452 polygons (11 3-vertex, 41 4-vertex).
Payload doors open.
Units: meters.
We have been using this model at STAR Labs, Stanford University, for
some years now. Contact me (tolis@nova.stanford.edu) or my supervisor
Scott Williams (scott@star5.stanford.edu) if you want a copy.
========================================================================
15. Image annotation software - Paint Programs
==============================================
TOUCHUP
-------
Touchup runs in Sunview and is pretty good. It reads in
rasterfiles, but even if your image isn't normally stored
in rasterfile format you could use screendump to make it a
rasterfile.
IDRAW
-----
Idraw (part of Stanford's InterViews distribution) can handle some
image formats in addition to being a MacDraw like tool. I'm not
sure exactly what they are.
You can ftp the idraw's binary from interviews.stanford.edu.
TGIF
----
Tgif is another MacDraw like tool that can handle X11 bitmap (xbm)
and X11 pixmap (xpm) formats. If the image you have is in formats
other than xbm or xpm, you can get the pbmplus toolkit to convert
things like gif or even some Macintosh formats to xpm.
Tgif's sources are available in the pub directory on cs.ucla.edu
(Version 2.12 of tgif at patchlevel 7 plus patch8 and patch9)
Editimage
---------
Use the editimage facility of KHOROS (see under the Visualization tools).
This is just one utility in the overall system- you can essentially do all
your image processing and macdraw-type graphics using this package.
PBM+
----
You might be able to get by with PBMPlus. pbmtext gives you text output
bitmaps which can be overlaid on top of your image.
ICE
---
'ice' requires Sun hardware running OpenWindows 3.It's a PostScript-based
graphical editor,and it's available for anonymous ftp from Internet host
eo.soest.hawaii.edu (128.171.151.12). Requires Sun C++ 2.0 and
two other locally developed packages, the LXT library (an Xlib-based
toolkit) and a small C++ class library. All files (pub/ice.tar.Z,
pub/lxt.tar.Z and pub/ldgoc++.tar.Z) are available in compressed
tar format. pub/ice.tar.Z contains a README that gives installation
instructions, as well as an extensive man page (ice.1).
A statically-linked compressed executable pub/ice-sun4.Z for
SPARC systems is also available for ftp.
All software is the property of Columbia University and may not
be redistributed without permission.
ice means Image Composition Environment and it's an imaging tool that
allows raster images to be combined with a wide variety of
PostScript annotations in WYSIWYG fashion via X11 imaging
routines and NeWS PostScript rasterizing.
ImageMagick
-----------
Use ImageMagick to annotate an image from your X server. Pick the
position of your text with the cursor and choose your font and pen
color from a pull-down menu. ImageMagick can read and write many
of the more popular image formats. ImageMagick is available as
export.lcs.mit.edu: contrib/ImageMagick.tar.Z or at your nearest
X11 archive.
BIT
---
bit is an interactive full color image viewer and editor based on
Silicon Graphics GL. It's an image viewer, an image editor/processor,
and can serve as a launch pad for other applications via key bindings.
It has also built-in editing/annotate capabilities
Xpaint
------
From: koblas@netcom.com (David Koblas)
XPaint is a color image editing tool which features most standard paint
program options. It allows for the editing of multiple images simultaneously
and supports various formats, including PPM, XBM, TIFF, etc.
Available at:
export.lcs.mit.edu as contrib/xpaint-?.?.0.tar.Z
netcom.com as pub/koblas/xpaint-?.?.0.tar.Z
ezd
---
A small bitmap collaging utility. It does things like: put image 1 at x,y,
put image 2 at x2,y2, and have image 2 overlayed on image 1, etc.
The commands to do the previous example are: (bitmap 10 10 "image1.xbm"),
(bitmap 11 11 "image2.xbm").
Available on gatekeeper.dec.com: pub/DEC/ezd
========================================================================
16. Scientific visualization stuff
==================================
X Data Slice (xds)
-------------------
Bundled with the X11 distribution from MIT,
in the contrib directory. Available at ftp.ncsa.uiuc.edu [141.142.20.50]
(either as a source or binaries for various platforms).
National Center for Supercomputing Applications (NCSA) Tool Suite
-----------------------------------------------------------------
Platforms: Unix Workstations (DEC, IBM, SGI, Sun)
Apple MacIntosh
Cray supercomputers
Availability: Now available. Source code in the public domain.
FTP from ftp.ncsa.uiuc.edu.
Contact: National Center for Supercomputing Applications
Computing Applications Building
605 E. Springfield Ave.
Champaign, IL 61820
Cost: Free (zero dollars).
The suite includes tools for 2D image and 3D scene analysis and visualization.
The code is actively maintained and updated.
Spyglass
--------
They sell commercial versions of the NCSA tools. Examples are:
Spyglass Dicer (3D volumetric data analysis package)
Platform: Mac
Spyglass Transform (2D data analysis package)
Platforms: Mac, SGI, Sun, DEC, HP, IBM
Contact:
Spyglass, Inc.
P.O. Box 6388
Champaign, IL 61826
(217) 355-6000
KHOROS 1.0 Patch 5
------------------
Available via anonymous ftp at pprg.eece.unm.edu (129.24.24.10).
cd to /pub/khoros to see what is available. It is HUGE (> 100 MB), but good.
Needs Unix and X11R4. Freely copied (NOT PD), complete with sources
and docs. Very extensive and at its heart is visual programming.
Khoros components include a visual programming language, code
generators for extending the visual language and adding new application
packages to the system, an interactive user interface editor, an
interactive image display package, an extensive library of image and
signal processing routines, and 2D/3D plotting packages.
See comp.soft-sys.khoros on Usenet and the relative FAQ for more info....
Contact:
The Khoros Group
Room 110 EECE Dept.
University of New Mexico
Albuquerque, NM 87131
Email: khoros-request@chama.eece.unm.edu
MacPhase
--------
Analysis & Visualization Application for the Macintosh.
Operates on 1D and 2D data arrays. Import/Export several different file
formats. Several different plotting options such as gray scale,
color raster, 3D Wire frame, 3D surface, contour, vector, line, and
combinations. FFTs, filtering, and other math functions, color look up
editor, array calculator, etc. Shareware, available via anonymous ftp from
sumex-aim.stanford.edu in the info-mac/app directory.
For other information contact Doug Norton (e-mail: 74017.461@@compuserve.com)
+IRIS Explorer
+-------------
+From: Jeremy Walton <jeremyw@nag.co.uk>
+
+ IRIS Explorer is an application creation system developed by Silicon
+ Graphics that provides visualisation and analysis functionality for
+ computational scientists, engineers and other scientists. The IRIS
+ Explorer GUI allows users to build custom applications without having
+ to write any, or a minimal amount of, traditional code. Also, existing
+ code can be easily integrated into the IRIS Explorer environment.
+
+ Platforms: SGI, Cray, SPARC, DEC, IBM, HP.
+ The SPARC ports have been done by DuPont Pixel and by Numerical
+ Algorithms Group (NAG) Ltd; NAG are also porting IRIS Explorer to
+ IBM RS/6000, HP 9000 series 700 and DEC Alpha.
+
+ Availability: Available now on SGI, Cray and SPARC. Other versions
+ to be announced soon.
+
+ Contact: IRIS Explorer Center for details of availability and
+ distribution information, and for user support and other technical
+ enquiries:
+
+ IRIS Explorer Center (Europe)
+ PO Box 50
+ OXFORD
+ OX2 8JU
+ UK
+ Tel : +44 (0)865 516377
+ Fax : +44 (0)865 516388
+ e-mail : helpdesk@iec.co.uk
+
+ IRIS Explorer Center (North America)
+ 1400 Opus Place, Suite 200
+ Downers Grove, IL 60515-5702
+ USA
+ Tel : +1 708 971 2367
+ Fax : +1 708 971 2706
+ e-mail : infodesk@nag.com
+
+ More information: The IRIS Explorer Center runs a Gopher server,
+ containing technical information and advice, technical
+ papers and User Group details:
+
+ Name = IRIS Explorer Center Bulletin Board
+ Type = 1
+ Path = 1/visual/IE/iecbb
+ Host = nags2.nag.co.uk [192.156.217.7]
+ Port = 70
+
+ This service is also available via World Wide Web:
+
+ http://nags2.nag.co.uk/Welcome_IEC.html
+
+ The explorer ftp site is ftp.epcc.ed.ac.uk which is housed at
+ Edinburgh Parallel Computing Centre. The administrator is Gordon Cameron.
+ This archive is mirrored in the USA by swedishchef.lerc.nasa.gov,
+ administered by Jeff Hanson.
+
+ Newsgroups: comp.graphics.explorer, comp.sys.sgi.graphics
apE
---
Back in the 'old good days', you could get apE for nearly free.
Now has gone commercial and the following vendor supplies it:
TaraVisual Corporation
929 Harrison Avenue
Columbus, Ohio 43215
Tel: 1-800-458-8731 and (614) 291-2912
Fax: (614) 291-2867
Cost:
$895 (plus tax); runtime version with a site-license for a single user
(at a time), no limit on the number of machines in a cluster.
$895 includes support/maintenance and upgrades.
Source code more. Additional user licenses $360.
The name of the package has become apE III (TM).
Khoros is very similar to apE on philosophy, as are AVS and Explorer.
AVS
---
See also:
comp.graphics.avs
Platforms: CONVEX, CRAY, DEC, Evans & Sutherland, HP, IBM, Kubota,
Set Technologies, SGI, Stardent, SUN, Wavetracer
Availability: AVS4 available on all the above:
For all UNIX workstations.
Contact:
Advanced Visual Systems Inc.
300 Fifth Ave.
Waltham, MA 02154
(617)-890-4300 Telephone
(617)-890-8287 Fax
avs@avs.com Email
Advanced Visual Systems Inc. for: CRAY, HP, IBM, SGI, Stardent, SUN
CONVEX for CONVEX
Advanced Visual Systems Inc. or CRAY for CRAY
DEC for DEC
Evans & Sutherland for Evans & Sutherland
Advanced Visual Systems Inc. or IBM for IBM
Kubota Pacific Inc. for Kubota
Set Technologies for Set Technologies
Wavetracer for Wavetracer
FTP Site: for modules, data sets, other info:
avs.ncsc.org (128.109.178.23)
WIT
---
In a nutshell it's a package of the same genre as AVS,Explorer,etc.
It seems more a image processing system than a generic SciVi system (IMHO)
Major elements are:
- a visual programming language, which automatically exploits the inherent
parallelism
- a code generator which converts the graph to a standalone program
Iconified libraries present a rich set of point, filter, io, transform,
morphological, segmentation, and measurement operations.
A flow library allows graphs to employ broadcast, merge,
synchronization, conditional, and sequencing control strategies.
WIT delivers an object-oriented, distributed, visual programming
environment which allows users to rapidly design solutions to their
imaging problems. Users can consolidate both software and hardware
developments within a complete CAD-like workspace by adding their
own operators (C functions), objects (data structures), and servers
(specialized hardware). WIT runs on Sun, HP9000/7xx, SGI and supports
Datacube MV-20/200 hardware allowing you to run your graphs in real-time.
WIT is also supported on Linux (a demo will be soon available)
For a free WIT demo disk, call, FAX, or e-mail (poon@ee.ubc.ca)
us stating your complete name, address, voice, FAX, e-mail info.
and desired platform.
There's an FTP'able demo for SPARCs under
sunsite.unc.edu /pub/sun-info/catalyst/logical-vision
Pricing: WIT for Sparc, one yr. free upgrades, 30 days
technical support....................$5000 US
Entry level pricing now at $1000 US, with upgrade to the full system
for $4000 US more.
Academic institutions: discounts available
Contact:
Logical Vision Ltd.
Suite 108-3700 Gilmore Way
Burnaby, B.C., CANADA
V5G 4M1
Tel: 604-435-2587
Fax: 604-435-8840
e-mail: Terry Arden <poon@ee.ubc.ca>
VIS-5D
------
A system for visually exploring the output of 5-D gridded data sets
such as those made by weather models. Platforms:
SGI IRIS with VGX, GTX, TG, or G graphics,
SGI Crimson or Indigo (R4000, Elan graphics suggested), IRIX 4.0.x
IBM RS/6000 with GL graphics, AIX version 3 or later;
Stardent GS-1000 and GS-2000 (with TrueColor display)
In any case, 32 (or more) MB of RAM are suggested.
You can get it freely (thanks to NASA support) via anonymous ftp:
ftp iris.ssec.wisc.edu (or ftp 144.92.108.63), then
ftp> cd pub/vis5d
ftp> ascii
ftp> get README
ftp> bye
NOTE: You can find the package also on wuarchive.wustl.edu in the
graphics/graphics/packages directory.
Read section 2 of the README file for full instructions
on how to get and install VIS-5D.
Contact:
Bill Hibbard (whibbard@vms.macc.wisc.edu)
Brian Paul (bpaul@vms.macc.wisc.edu)
DATAexplorer (IBM)
------------------
Platforms : IBM Risc System 6000, IBM POWER Visualization Server
(SIMD mesh 32 i860s, 40 MHz)
Working on (announced) : SGI, HP, Sun
Contact:
Your local IBM Rep. For a trial package ask your rep to contact :
David Kilgore
Data Explorer Product Marketing
YKTVMH(KILCORE), (708) 981-4510
[ or send e-mail to: stein@watson.ibm.com ]
There's an FTP repository at ftp.tc.cornell.edu : /pub/vis/Data.Explorer,
a Gopher interface at info@tc.cornell.edu, and a mailing-list at
data-exp@watson.ibm.com
Wavefront
---------
Data Visualizer, Personal Visualizer, Advanced Visualizer.
Platforms: SGI, SUN, IBM RS6000, HP, DEC
Availability:
Available on all the above platforms from Wavefront
Technologies. Educational programs and site licenses are
available.
Contacts:
Mike Wilson (mike@wti.com)
Wavefront Technologies, Inc.
530 East Montecito Street
Santa Barbara, CA 93103
805-962-8117
FAX: 805-963-0410
Wavefront Europe
Guldenspoorstraat 21-23
B-9000 Gent, Belgium
32-91-25-45-55
FAX: 32-91-23-44-56
Wavefront Technologies Japan
17F Shinjuku-sumitomo Bldg
2-6-1 Nishi-shinjuku, Shunjuku-Ku
Tokyo 168 Japan
81-3-3342-7330
FAX 81-3-3342-7353
PLOT3D and FAST from NASA Ames
------------------------------
These packages are distributed from COSMIC at least
(for FAST ask Pat Elson <pelson@nas.nasa.gov> for
distribution information). In general, these codes are for US
citizens only :-(
[ Call COSMIC, NASA's software ditribution center for details ]
XGRAPH
------
On the contrib tape of X11R5. Its specialty is display of up
to 64 data sets (2D).
NCAR
----
National Center for Atmospheric Research. One of the original graphics
packages. Runs on Sun, RS6000, SGI, VAX, Cray Y-MP, DecStations, and more.
Contact:
Graphics Information
NCAR Scientific Computing Division
P.O. Box 3000
Boulder, CO 80307-3000
(303)-497-1201
scdinfo@ncar.ucar.edu
Cost:
.edu
$750 Unlimited users
.gov
$750 1 user
$1500 5 users
$3000 25 users
.com users multiply .gov * 2.0
IDL
---
An environment for scientific computing and visualization.
Based on an array oriented language, IDL includes 2D and 3D
graphics, matrix manupulation, signal and image processing,
basic statistics, gridding, mapping, and a widget based system
for building GUI for IDL applications (Open Look, Motif, or
MS-Windows).
Environments: DEC (VMS and Ultrix), HP, IBM RS6000, SGI, Sun,
Microsoft Windows. (Mac version in progress)
Cost: $1500 to $3750, Educational and quantity discounts
available.
See also: comp.lang.idl-pvwave (the IDL-PVWAVE bundle)
Contact: Research Systems Inc.
777 29th Street, Suite 302
Boulder, CO 80303
Phone: 303-786-9900
FAX: 303-786-9909
E-mail: info@rsinc.com
Demo available via FTP. Call or E-mail for details.
IDL/SIPS
--------
"A lot of people are using IDL with a package called SIPS. This was
developed at the University of Colorado (Boulder) by some people working
for Alex Goetz. You might try contacting them if you already have IDL
or would be willing to buy it. It's a few thousand dollars (American) I
expect for IDL and the other should be free. Those are the general
purpose packages I've heard of, besides what TerraMar has.
SIPS _was_ written for AVIRIS imagery. I'm not sure how general purpose
it is. You would have to contact Goetz or one of his people and ask. I
have another piece of software (PCW) that does PC and Walsh
transformations with pseudocoloring and clustering and limited image
modification (you can compute an image using selected components). I've
used it on 70 megabyte AVIRIS images without problems, but for the best
speed you need an external DSP card. It will work without it, but large
images take quite a while (50-70 times as long) to process. That's a
freebie if you want it"
"My favorite is IDL (Interactive Data Language) from Research Systems,
Inc. IDL is in my opinion, much better and infinitely easier. Its
programming language is very strong and easy -- very Pascal-like. It
handles the number-crunching very well, also. Personally, I like doing
the number-crunching with IDL on the VAX (or Mathematica, Igor, or even
Excel on the Mac if it's not too hairy), then bringing it over to NIH
Image for the imaging part. I have yet to encounter any situation which
that combination couldn't handle, and the speed and ease of use
(compared to IRAF) was incredible. By the way, it's mostly astronomical
image processing which I've been doing. This means image enhancement,
cleaning up bad lines/pixels, and some other traditional image
processing routines. Then, for example, taking a graph of intensity
versus position along a line I choose with the mouse, then doing a curve
fit to that line (which I might do like in KaleidaGraph.) "
[ For IDL call Research Systems , for PV-WAVE call Precision Visuals and
for SIPS call University of Colorado @ Boulder . From what I can
understand, you can get packaged programs from Research Systems, though
-- nfotis ]
Visual3
-------
Visual3 is a visualization system that provides a programmer level
interface instead of a canned application. Brief description and
availability is below.
Visual3 runs on Stellar, DEC stations, IBM RS/6000, HP and SGI.
(From the manual):
VISUAL3 is an interactive graphics environment for the visualization of
three-dimensional, structured and/or unstructured data. This
volumetric data may be steady or time varying.
VISUAL3 deals with three different types of surfaces. The first
category is `domain' surfaces. These are surfaces which are defined
by the application program which initializes VISUAL3, and they
typically correspond to the surfaces which bound the computational
domain. A subset of this first class, are `mapped domain' surfaces,
for which there is a mapping from points on the surface to an
$(x',y')$ coordinate system, which allows plotting of surface
quantities in a 2D setting.
The second category is `dynamic' surfaces. These are surfaces whose
orientation and position, relative to the computational domain, can be
changed interactively by the user. Although there are several types of
dynamic surface, only one dynamic surface can exist at one time. Also,
a dynamic surface cannot be activated when a mapped domain surface is
being plotted in the 2D window.
The third category is `static' surfaces. These are surfaces which
at one time were `dynamic', but then were `frozen' and transferred
into a database, along with the domain surfaces. These static
surfaces are then treated in almost the same way as the unmapped
domain surfaces.
NOTE:
Any `static' surface in a `grid unsteady' application deforms with
the grid movement. The surface is associated with the cells and
not physical space. Therefore, for planar cuts, the data is
not clipped to the 2D window size when the surface was saved.
Author: Bob Haimes email: haimes@orville.mit.edu
MIT 37-467 FAX: (617) 253-0823
77 Mass Ave Tel: (617) 253-7518
Cambridge, Ma 02139
FieldView
---------
An interactive program designed to assist an engineer in
investigating fluid dynamics data sets.
Platforms: SGI, IBM, HP, SUN, X-terminals
Availability: Currently available on all of the above
platforms. Educational programs and volume
discounts are available.
Contact:
Intelligent Light
P.O. Box 65
Fair Lawn, NJ 07410
(201)794-7550
Steve Kramer (kramer@ilight.com)
SciAn
------
SciAn is primarily intended to do 3-D visualizations of data in an
interactive environment with the ability to generate animations using
frame-accurate video recording devices. A user manual, on-line help, and
technical notes will help you use the program.
Cost : 0 (Free), source code provided via ftp.
Platforms : SGI 4D machines and IBM RS/6000 with the GL card + Z-buffer
Where to find it:
ftp.scri.fsu.edu [144.174.128.34] : /pub/SciAn
A mirror is monu1.cc.monash.edu.au [130.194.1.101] : /pub/SciAn
SCRY
----
[ From the README : ]
Scry is a distributed image handling system that pro-
vides image transport and compression on local and wide area
networks, image viewing on workstations, recording on video
equipment, and storage on disk. The system can be distri-
buted among workstations, between supercomputers and works-
tations, and between supercomputers, workstations and video
animation controllers. The system is most commonly used to
produce video based movie displays of images resulting from
visualization of time dependent data, complex 3D data sets,
and image processing operations. Both the clients and
servers run on a variety of systems that provide UNIX-like C
run-time environments, and 4BSD sockets.
The source is available for anonymous ftp:
george.lbl.gov [128.3.196.93] : pub/scry.tar.Z
Contact:
Bill Johnston, (wejohnston@lbl.gov, ...ucbvax!csam.lbl.gov!johnston)
or
David Robertson (dwrobertson@lbl.gov, ...ucbvax!csam.lbl.gov!davidr)
Imaging Technologies Group
MS 50B/2239
Lawrence Berkeley Laboratory
1 Cyclotron Road
Berkeley, CA 94720
SVLIB / FVS
-----------
SVLIB is an X-Windows widget set based on the OSF (Open Software
Foundation) Motif widget set. SVLIB widgets are macro-widgets
comprising lower level Motif widgets such as buttons, scrollbars,
menus, and drawing areas. It is designed to address the reusability
of 2D visualization routines and each widget in the library is an
encapsulation of a specific visualization technique such as colormap
manipulation, image display, and contour plotting. It is targetted
to run on UNIX workstations supporting OSF/Motif. Currently, only
color monitors are supported. Since SVLIB is a collection of widgets
developed in the same spirit as the OSF/Motif user interface widget
set, it integrates seamlessly with the Motif widgets. Programmers
using SVLIB widgets see the same interface and design as other
Motif widgets.
FVS is a visualization software for Computational Fluid Dynamics (CFD)
simulations. FVS is designed to accept data generated from these
simulations and apply various visualization techniques to present these
data graphically.
FVS accepts three-dimensional multi-block data recorded in NCSA HDF format.
iti.gov.sg [192.122.132.130] : /pub/svlib (Scientific Visualization)
/pu/fvs; These directories contain demo binaries for Sun4/SGI
Cost : US$200 for academic and US$300 for non-academic institutions.
(For each of the above items). You're getting the source for the licence.
Contact
-------
Miss Quek Lee Hian
Member of Technical Staff
Information Technology Institute
National Computer Board
NCB Building
71, Sicence Park Drive
Singapore 0511
Republic of Singapore
Tel : (65)7720435
Fax : (65)7795966
Email : leehian@iti.gov.sg
---------------------------------------------------------
GVLware Distribution:
Bob - An interactive volume renderer for the SGI
Raz - A disk based movie player for the SGI
Icol - Motif color editor
---------------------------------------------------------
The Army High Performance Computing Research Center (AHPCRC) has been
developing a set of tools to work with large time dependent 2D and 3D
data sets. In the Graphics and Visualization Lab (GVL) we are using
these tools along side standard packages, such as SGI Explorer and the
Utah Raster Toolkit, to render 3D volumes and create digital movies.
A couple of the more general purpose programs have been bundled into a
package called "GVLware".
GVLware, currently consisting of Bob, Raz and Icol, is now available
via ftp. The most interesting program is probably Bob, an interactive
volume renderer for the SGI. Raz streams raster images from disk to
an SGI screen, enabling movies larger than memory to be played. Icol
is a color map editor that works with Bob and Raz. Source and
pre-built binaries for IRIX 4.0.5 are included.
To acquire GVLware, anonymous ftp to:
machine - ftp.arc.umn.edu
file - /pub/gvl.tar.Z
To use GVLware:
mkdir gvl ; cd gvl
zcat gvl.tar.Z | tar xvf -
more README
Some Bob features:
Motif interface, SGI GL rendering
Renders 64 cubed data set in 0.1 to 1.0 seconds on a VGX
Alpha Compositing and Maximum Value rendering, in perspective
(only Maximum Value rendering on Personal Iris)
Data must be a "Brick of Bytes", on a regularly spaced grid
Animation, subvolumes, subsampling, stereo
Some Raz features:
Motif interface, SGI GL rendering
Loads files to a raw disk partition, then streams to screen
(requires an empty disk partition to be set aside)
Script interface available for movie sequences
Can stream from memory, like NCSA XImage
Some Icol features:
Motif interface
Easy to create interpolated color maps between key points
RGB, HSV and YUV color spaces, multiple file formats
Communicates changes automatically to Bob and Raz
Has been tested on SGI, Sun, DEC and Cray systems
BTW: Bob == Brick of Bytes
Icol == Interpolated Color
Raz == ? (just a name)
Please send any comments to
gvlware@ahpcrc.umn.edu
This software collection is supported by the Army Research Office
contract number DAALO3-89-C-0038 with the University of Minnesota Army
High Performance Computing Research Center.
IAP
---
Imaging Applications Platform is a commercial package for medical and
scientific visualization. It does volume rendering, binary surface
rendering, multiplanar reformating, image manipulation, cine sequencing,
intermixes geometry and text with images and provides measurement and
coordinate transform abilities.
It can provide hardcopy on most medical film printers, image database
functionality and interconnection to most medical (CT/MRI/etc) scanners.
It is client/server based and provides an object oriented interface. It
runs on most high performance workstations and takes full advantage of
parallelism where it is available. It is robust, efficient and
will be submitted for FDA approval for use in medical applications.
Cost: $20K for OEM developer, $10K for educational developer
and run times starting at $8900 and going down based on quantity.
The developer packages include two days training for two people in Toronto.
Available from:
ISG Technologies
6509 Airport Road
Mississauga, Ontario,
Canada, L4V-1S7
(416) 672-2100
e-mail: Rod Gilchrist <rod@isgtec.com>
========================================================================
IMPORTANT NOTE: I'M EXPECTING TO REMOVE THIS PART AND LET ANOTHER ONE
TAKE IT OVER!!!!
From: Didier Vandervecken <vdvk@netcom.com>
The FAQ is available on the Computational Chemistry List Server:
1) by anonymous FTP
ftp infomeister.osc.edu (or ftp 128.146.36.5)
Name: anonymous
Password: your_e-mail_address (please !)
ftp> cd pub/chemistry/documents
ftp> get README
ftp> get molecular_graphics_packages
ftp> quit
2) by mail
send a message to MAILSERV@osc.edu
the content of the mail would be :
select chemistry
get documents/molecular_graphics_packages
quit
3) by gopher
(This will be available soon..., it is still undergoing testing).
The archives are located at infomeister.osc.edu on port 73.
So you can access them with a command
gopher infomeister 73
or similar (depending on your system).
--------------------------------------------------------------------------
17. Molecular visualization stuff
=================================
[ Based on a list from cristy@dupont.com < Cristy > , which asked for
systems for displaying Molecular Dynamics, MD for short ]
Flex
----
It is a public domain package written by Michael Pique, at The Scripps
Research Institute, La Jolla, CA. Flex is stored as a compressed,
tar'ed archive (about 3.4MB) at ftp.scripps.edu [137.131.168.6], in
pub/flex. It displays molecular models and MD trajectories.
MacMolecule
-----------
(for Macintosh). I searched with Archie, and the most
promising place is sumex-aim.stanford.edu (info-mac/app, and
info-mac/art/qt for a demo)
MD-DISPLAY
----------
Runs on SGI machines. Call Terry Lybrand <lybrand@bioeng.washington.edu>
XtalView
--------
It is a crystallography package that does visualize molecules and much more.
It uses the XView toolkit.
Call Duncan McRee <dem@scripps.edu>
landman@hal.physics.wayne.edu:
-----------------------------
I am writing my own visualization code right now. I look at MD output
(a specific format, easy to alter for the subroutine) on PC's. My
program has hooks into GKS. If your friend has access to Phigs for X
(PEX) and fortran bindings, I would be happy to share my evolving code
(free of charge). Right now it can display supercells of up to 65
atoms (easy to change), and up to 100 time steps, drawing nearest
neighbor bonds between 2 defining nn radii. It works acceptably fast
on a 10Mhz 286.
icsg0001@caesar.cs.montana.edu:
------------------------------
I did a project on Molecular Visualization for my Master's Thesis, using
UNIX/X11/Motif which generates a simple point and space-filling model.
KGNGRAF
-------
KGNGRAF is part of MOTECC-91. Look on malena.crs4.it (156.148.7.12),
in pub/motecc.
motecc.info.txt Information about MOTECC-91 in plain ascii format.
----------------------------------------------------------------------------
motecc.info.troff Information about MOTECC-91 in troff format.
motecc.form.troff MOTECC-91 order form in troff format.
motecc.license.troff MOTECC-91 license agreement in troff format.
----------------------------------------------------------------------------
motecc.info.ps Information about MOTECC-91 in PostScript format.
motecc.form.ps MOTECC-91 order form in PostScript format.
motecc.license.ps MOTECC-91 license agreement in PostScript format.
ditolla@itnsg1.cineca.it:
------------------------
I'm working on molecular dynamic too. A friend of mine and I have
developed a program to display an MD run dynamically on Silicon
Graphics. We are working to improve it, but it doesn't work under X,
we are using the graphi. lib. of the Silicon Gr. because they are much
faster then X. When we'll end it we'll post on the news info about
where to get it with ftp. (Will be free software).
XBall V3.0
----------
Written by David Nedde. Call daven@ivy.wpi.edu.
This program simulates bouncing balls in a window. You create the
balls in a variety of ways, and can set the gravity, elasticity,
whether balls collide or not, etc.
Includes Motif support, 3-d shaded balls, and a demo running facility.
[ It's more a demo than a production program - another like it is xgas from
the X11 distribution. Someone could make something more elaborate with
polyatomics, etc. ]
XMol
----
An X Window System program that uses OSF/Motif for the
display and analysis of molecular model data. Data from several
common file formats can be read and written; current formats include:
Alchemy, CHEMLAB-II, Gaussian, MOLSIM, MOPAC, PDB, and MSCI's XYZ
format (which has been designed for simplicity in translating to
and from other formats). XMol also allows for conversion between
several of these formats.
Xmol is available at ftp.msc.edu. Read pub/xmol/README for
further details.
MSCI has changed its distribution policy, the current version is
now available to users outside the USA and it no longer contains a
built-in expiration date. However, only binary versions for Decstation,
SGI Iris-4D, IBM RS/6000, Sun SPARCstation and Sun-3 are available.
INSIGHT II
----------
from BIOSYM Technologies Inc.
SCARECROW
---------
The program has been published in J. Molecular Graphics 10
(1992) 33. The program can analyze and display CHARMM, DISCOVER, YASP
and MUMOD trajectories. The program package contains also software for
the generation of probe surfaces, proton affinity
surfaces and molecular orbitals from an extended Huckel program.
It works on Silicon Graphics machines.
Contact Leif Laaksonen <Leif.Laaksonen@csc.fi or laaksone@csc.fi>
MULTI
-----
ns.niehs.nih.gov [157.98.8.8] : /pub - MULTI 3.0 (Multi-Process
Molecular Modeling Suite). Runs on Silicon Graphics Workstations only.
MindTool
--------
It runs under SunView, and requires a fortran compiler and Sun's CGI
libraries. MindTool is a tool provided for the interactive graphic
manipulation of molecules and atoms. Currently, up to 10,000
atoms may be input.
Available via anonymous FTP, at rani.chem.yale.edu, directory
/pub/MindTool ( Check with Archie for other sites if that's too far )
RasMol/RasWin
-------------
RasMol is a public domain molecular visualisation package written by
Roger Sayle, at The Biocomputing Research Unit, University of Edinburgh,
UK (rasmol@dcs.ed.ac.uk). RasMol is the version for UNIX workstations under
the X Window System and RasWin is the version for MS Windows version 3.1.
RasMol is a tool intended for the visualisation of proteins and nucleic
acids. It reads Brookhaven Protein Databank (PDB)
files and interactively renders them in a variety of formats on either an
8bit or 24/32bit colour display. The complete source code and user
documentation for both the UNIX/X11 version and the IBM PC/MS Windows 3.1
version may be obtained by anonymous ftp from ftp.dcs.ed.ac.uk
[129.215.160.5] in the directory /pub/rasmol. The UNIX/X11 source code is
contained in the file RasMol2.tar.Z and the MS Windows source code and
executable in the file raswin.zip. Both of these files include a slightly
dated version of the PostScript user reference manual.
The program is intended for teaching and generating publication
quality images. The program has both a menu system and a full featured
command line interface. Different parts and representations of the
molecule may be coloured or displayed in a number of formats independently.
Currently supported formats include wireframe, ball and stick, backbone,
space filling spheres and protein ribbon models. The space filling spheres
may even be shadowed. The molecule may be manipulated using scroll bars,
the interactive command line or from a dials box if attached. The resulting
image may be saved at any point in PostScript, GIF, PPM, Sun rasterfile or
Microsoft BMP formats. For more details see the RasMol user reference.
It was claimed at a recent conference to be the fastest available
uniprocessor program for drawing shadowed spacefilled molecules. On a
SparcStation it can shadow a 10,000 atom protein in less than 10 seconds.
The current version of the program has been tested on sun3, sun4, sun386i,
hp9000, sequent, DEC alpha, IBM RS/6000 and SGI, DEC and E&S mips based
machines compiled under both gcc and the native compiler. The version for
Microsoft Windows requires version 7 of the Microsoft Optimizing C Compiler
and the Microsoft Software Development Kit (SDK).
MolViewer
---------
From: Steve Ludtke <steve@ion.rice.edu>
It is a molecule viewing App for machines running NeXTStep. It
permits interactive rotation and manipulation (bond lengths, angles, and
dihedrals) of molecules of arbitrary size (depends on your memory).
Some special features are included for protein analysis. Proteins can be
generated from scratch if the program is given an amino acid sequence and
secondary structure. A variety of animations are supported. Animations and
printing are generated by NeXT's Photorealistic Renderman daemon. File
formats supported (to varying degrees) include: PDB, Alchemy, HIN
(hyperchem), and MolViewer's own file format. It is freeware. Full source
and binaries can be obtained from ion.rice.edu, sonata.cc.purdue.edu and
several other popular NeXT sites. The current version is 0.91.
-----
[ I would also suggest looking at least in SGI's Applications Directory.
It contains many more packages - nfotis ]
===========================================================================
End of Part 3 of the Resource Listing
--
Nick (Nikolaos) Fotis National Technical Univ. of Athens, Greece
HOME: 16 Esperidon St., InterNet : nfotis@theseas.ntua.gr
Halandri, GR - 152 32 UUCP: mcsun!pythia!theseas!nfotis
Athens, GREECE FAX: (+30 1) 77 84 578