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  1.                Setup of the Server bioftp.unibas.ch
  2.                ====================================
  3.  
  4.                                     ~/
  5.                  +-------------------+-----------------------------+
  6.                  |                                                 |
  7.                biology                                         programs 
  8.    +-------------+-----------+--------------------+      uu and zoo source code
  9.    |                         |                    |     
  10.    EMBnet                    cd                  database
  11.    |           The last EMBL CD-ROM (resources    +------------------------+
  12.    |          permitting - drive used elsewehere)                          |
  13.    |                                                                       |
  14.    +-----+-------------+-----------+--------------------+                  |
  15.          |             |           |                    |                  |
  16.     XSwissprot         |     XEMBL.VAX_ZOO           Xembl                 |
  17. (not yet; scheduled)   |           |                    |                  |
  18.     +----+--+          |   zoo'ed    VAX/VMS       The contents            |
  19. data.dir   indices.dir |   GCG / NBRF formatted    of the dir's            |
  20. Updates to the current |   current XEMBL.ref       below containing        |
  21. Swissprot database     |   and XEMBL.seq files     Entry code, and         |
  22.                        |   as well as XXEMBL       title line              |
  23.             DATABASE.ZOO                                 |                 |
  24. The zoo'ed databases currently                           |                 |
  25. availavle at BIOCENTER in VAX        +--------------------------+          |
  26. /VMS and GCG/NBRF formatted          |                          |          | 
  27. zoo files: EMBL,SWISSPROT,PIR        |                          |          |
  28.                                    data.dir                    indices.dir |
  29. +----+----+----+----+----+----+----+-+--+----+----+----+----+  containing  |
  30. fun  inv  mam  org  phg  pln  pri  pro  rod  syn  una vrl vrt  indices in  |
  31. Entries in EMBL format, *ONE PER FILE*. The files are named    EMBL format |
  32. using the entry code as file name. NEW in the next release;                | 
  33. extension 'dat', update to existing release, extension 'upd'.              |
  34.                                                                            |
  35. Variuos databases available on various other servers as well,mainly updated, 
  36.                            but not entirely produced, by Amos Bairoch, Geneva 
  37.                                                                            |
  38.  +---+----+------+---+----+---+---+----+------+----+-----+--+---+----+----++
  39.  |   |    |      |   |    |   |   |    |      |    |     |  |   |    |    |
  40. ecd  | fans_ref  |  info  |  ngdd |  seqanalr |  enzyme  | fly  | jour_tab|
  41.      |           |        |       |           |          |      |       trna
  42.    prosite      tfd      alu      epd     gcg_codon    limb   rebase
  43.