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MSF.SEQ
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Text File
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1993-02-18
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17KB
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311 lines
PileUp of: @Grupouno.Seqs
Symbol comparison table: GenRunData:PileUpDNA.Cmp CompCheck: 6876
GapWeight: 5.0
GapLengthWeight: 0.3
Pileup.Msf MSF: 2437 Type: N February 18, 1993 12:36 Check: 338 ..
Name: Bpobgla Len: 2437 Check: 6941 Weight: 1.00
Name: Bpobglb Len: 2437 Check: 3028 Weight: 1.00
Name: Cdcbgla Len: 2437 Check: 6915 Weight: 1.00
Name: Ssobeta Len: 2437 Check: 3454 Weight: 1.00
//
1 50
Bpobgla .......... .......... .......... .......... ..........
Bpobglb .......... ....GGATCC TGTAGCGTTA CGCAAGGGTC TGCGTTTGGA
Cdcbgla .......... .......... .......... .......... ..........
Ssobeta AAGGAGAAAC TTGGCAGTTT ATAACTTGAC AGTAGGTTGT GGAGTGATGA
51 100
Bpobgla .......... .......... .......... .......... ..........
Bpobglb GAATTTCATG GATGCTTGGG ATAAAGGGAA TTTCTCTCAA TATATGTGGA
Cdcbgla .......... .......... .......... .......... ..........
Ssobeta CTGGATCAAT ACTAGGAGGA GTAGCATATA ATTACGTTAC ACAATTTTAT
101 150
Bpobgla .......... .......... .......... .......... ..........
Bpobglb ACAGTATTTT GTATACAGGA GTTTCTACGT TATTAACCCT GATTATATCC
Cdcbgla .......... .......... .......... .......... ..........
Ssobeta AACCCAATAT ATTCAATAGA CCTTATGCTT ATCCTATCCT CTATTCTAAG
151 200
Bpobgla .......... .......... .......GAT CATGGTGGCG GGCATACCGG
Bpobglb GTGTTTGCCG CCTTTCCGCT AGCACGGGGA TATGTTAAGT TCAGCACCTT
Cdcbgla .......... .......... .......... .......... ..........
Ssobeta ATTCTCGGTA TCTCCCCTAT TCTTGACCAT AAAAGATACT CGCTCAAAGC
201 250
Bpobgla GTGGAGCTGT GCCTGGTTGA TTAACCTGTA CGCCCGGCTG GAAGATGGCG
Bpobglb CTTTTATGTG TTTTTCCTGA TTTCCATGTA TCTCCCCAAT CCGCTAATCC
Cdcbgla .......... .......... .......... .......... ..........
Ssobeta TTAAATAATA TTAATCATAA ATAAAGTCAT GTACTCATTT CCAAATAGCT
251 300
Bpobgla ACACTGCGCA TCGGTA..TG TTCGCACGTT GCTGTCGCGG TCGATCTACC
Bpobglb GCAATTTGCC TTATTAATAG CTGGGACTGT ACATACCAGC TTGGTTTATT
Cdcbgla .......... .......... .......... .......... ..........
Ssobeta TTAGGTTTGG TTGGTCCCAG GCCGGATTTC AATCAGAAAT GGGAACACCA
301 350
Bpobgla CTAATTTATT CGACGCTCAC CCGC...... ..CTTTTCAG ATCGACGGTA
Bpobglb TGCTGAAAAA CGACAGGTAC CGGCATCGCT TTCCTGATGT TTGTGGGGTA
Cdcbgla .......... .......... .......... .......... ..........
Ssobeta GGGTCAGAAG ATCCAAATAC TGACTGGTAT AAATGGGTTC ATGATCCAGA
351 400
Bpobgla ACTTTGGTGC GACGGCAGGC ATAGCAGAAA TGCTGCTGCA A.AGCCGCCC
Bpobglb TATCAAGTCT GTCTCCCGAG AGCTGGATGA AGCGGCTGCA ATGGACGGAT
Cdcbgla .......... .......... .......... .......... ..........
Ssobeta AAACATGGCA GCGGGATTAG TAAGTGGAGA TCTACCAGAA AATGGGCCAG
401 450
Bpobgla GGGCGAGCTG ACGCTATTGC CTGCCCTGCC ATCGGCATGG CCGGAGGGAC
Bpobglb GCGGTTATTC ACGTTATTTG TTCACGATTC TTGTACCACT GATGAAGCCC
Cdcbgla .......... .......... .......... .......... ..........
Ssobeta GCTACTGGGG AAACTATAAG ACATTTCACG ATAATGCACA AAAAATGGGA
451 500
Bpobgla GGGTCAGCGG CTTGAAAGGG CGTGGCGGAA TT......AC GGTCAGCATG
Bpobglb GTGTTGGCGA CAGGCATCAT TTTGACAGCC ATTGGTGCAT GGAACGACAT
Cdcbgla .......... .......... .......... .......... ..........
Ssobeta TTAAAAATAG CTAGACTAAA TGTGGAATGG TCTAGGATAT TTCCTAATCC
501 550
Bpobgla GAATGGTCCG GTTCGCGGCT CGTCCGTGCG GACGTTACCA CATCGGTCCA
Bpobglb TATAGGTCCT ACCATTTATT TGTCTGATCC CGCCTATCAG CCAGTGACCA
Cdcbgla .......... .......... .......... .......... ..........
Ssobeta ATTACCAAGG CCACAAAACT TTGATGAATC AAAACAAGAT GTGACAGAGG
551 600
Bpobgla ...GACGGGA AGCTGTACGA TTCGCAGTGC ACATCCGTTT AGCGTTGATG
Bpobglb AGGGACTGTT CTCTTTCTAT GGACAATACA TGAACAACTG GCCGCTGCTT
Cdcbgla .......... .......... .......... .......... ..........
Ssobeta TTGAGATAAA CGAAAACGAG TTAAAGAGAC TTGACGAGTA CGCTAATAAA
601 650
Bpobgla ATCGTCGGGC TCAGCCTGAT CCCAAGCACG GAGGATTTAT TTTGTCATGG
Bpobglb GCTTGCGGTA TCTTGATTGT TACACTACCG CTGGTTATTT TGTATATTTT
Cdcbgla .......... .......... .......... .......... ..........
Ssobeta GACGCATTAA ACCATTACAG GGAAATATTC AAGGATCTTA AAAGTAGAGG
651 700
Bpobgla ACTTTTACCA AAAAGCAGGA AACAACGAAT GAATATACGA TTATAATTGA
Bpobglb CCTCCAGCGC TTTATTGTCG GCGGTGCAAT GGCTGGAGCT GTGAAGTCTT
Cdcbgla .......... .......... .......... .......... ..........
Ssobeta ACTTTACTTT ATACTAAACA TGTATCATTG GCCATTACCT CTATGGTTAC
701 750
Bpobgla GGGAGAGGAA GAGAC..... ........AC AATGACTATT TTTCAATTTC
Bpobglb GATTCCTGAA AGGACGGTAC CGAGTATGAG CGAGAATACC TTTATATTTC
Cdcbgla ......AAGC TTTATTATCC TTAAAAGGAG GTTTATGGAC ATGAGTTTCC
Ssobeta ACGACCCAAT AAGAGTAAGA AGAGGAGATT TTACTGGACC AAGTGGTTGG
751 800
Bpobgla CGCAGGACTT TA....TGTG GGGTACCGCA ACGGCCGCCT ACCAAATCGA
Bpobglb CTGCCACGTT TA....TGTG GGGAACTTCA ACCTCTTCTT ATCAAATTGA
Cdcbgla CAAAAGGATT TT....TGTG GGGTGCTGCA ACTGCGTCAT ATCAGATTGA
Ssobeta CTAAGTACTA GAACAGTTTA CGAATTCGCT AGATTCTCAG CTTATATAGC
801 850
Bpobgla GGGGGCTTAC CAGGAGGATG GAAGAGGGTT GTCGATCTGG GATACCTTTG
Bpobglb AGGGGGTACA GATGAGGGCG GCAGAACGCC CTCCATTTGG GATACTTTTT
Cdcbgla AGGTGCATGG AACGAAGATG GAAAAGGCGA ATCTATTTGG GACAGGTTCA
Ssobeta TTGGAAATTC GATGATCTAG TGGATGAGTA CTCAACAATG AATGAACCTA
851 900
Bpobgla CCCATACGCC TGGCAAAGTG TTCAACGGTG ACAACGGCAA TGTAGCTTGT
Bpobglb GTCAAATCCC CGGGAAGGTA ATCGGAGGGG ACTGTGGAGA TGTAGCATGT
Cdcbgla CACATCAAAA AAGAAATATT CTATACGGTC ATAATGGCGA TGTTGCCTGC
Ssobeta ACGTTGTTGG AGGTTTAGGA TACGTTGGTG TTAAGTCCGG TTTTCCCCCA
901 950
Bpobgla GACAGCTATC ATCGTTACGA AGAAGATATC CGTCTCATGA AGGAACTGGG
Bpobglb GATCATTTTC ACCACTTTAA AGAAGACGTG CAATTAATGA AACAGCTTGG
Cdcbgla GACCATTACC ACAGGTTCGA AGAAGATGTT TCTCTTATGA AAGAACTTGG
Ssobeta G...GATACC TAAGCTTTGA ACTTTCCCGT AGGCATATGT ATAACATCAT
951 1000
Bpobgla CATTCGTACA TATCGTTTCT CGGTGTCCTG GCCACGTATA TTCCCTAATG
Bpobglb TTTTTTACAT TATCGTTTTT CTGTAGCTTG GCCACGTATT ATGCC...CG
Cdcbgla ACTCAAAGCC TACAGGTTTT CCATTGCATG GACAAGAATC TTTCCAGATG
Ssobeta TCAAGCTCAC GCAAGAGCGT ATGATGGGAT AAAGAGTGTT TCTAAAAAAC
1001 1050
Bpobgla GTGATGGTGA AGTCAATCAA GAGGGATTGG ACTATTATCA TCGTGTAGTT
Bpobglb CGGCTGGCAT TATTAACGAA GAGGGGTTGC TCTTCTACGA GCATCTGCTG
Cdcbgla GTTTTGGTAC TGTGAATCAG AAAGGTCTTG AGTTTTATGA TAGACTTATC
Ssobeta CAGTTGGAAT TATTTACGCT AATAGCTCAT TCCAGCCGTT AACGGATAAA
1051 1100
Bpobgla GATTTGTTGA ATGACAACGG AATTGAACCG TTTTGTACAC TGTATCACTG
Bpobglb GATGAGATTG AGTTGGCTGG ACTGATCCCG ATGCTGACGC TGTATCATTG
Cdcbgla AACAAACTTG TTGAAAACGG TATTGAACCG GTTGTCACCC TTTACCACTG
Ssobeta GATATGGAAG CGGTAGAGAT GGCTGAAAAT GATAATAGAT GGTGGTTCTT
1101 1150
Bpobgla GGATCTGCCT CAGGCGCTAC AGGATGCCGG AGGATGGGGA AATCGTCGCA
Bpobglb GGATCTACCG CAGTGGATTG AGGACGAGGG TGGATGGACA CAGCGAGAGA
Cdcbgla GGACCTTCCG CAGAAGCTGC AAGACATTGG CGGCTGGGCA AACCCAGAAA
Ssobeta TGATGCTATA ATAAGAGGTG AGATCACCAG AGGAAACGAG AAGATTGTAA
1151 1200
Bpobgla CAATTCAGGC ATTTGTCCAG TTTGCGGAAA CGATGTTCCG TGAGTTTCAC
Bpobglb CTATCCAACA TTTTAAAACG TATGCCTCTG TAATCATGGA TCGATTCGGC
Cdcbgla TTGTGAATTA TTATTTCGAT TATGCAATGC TTGTTATAAA CCGTTATAAA
Ssobeta GAGATGACCT AAAGGGTAGA TTGGATTGGA TTGGAGTTAA TTATTACACT
1201 1250
Bpobgla GGTAAAATAC AGCATTGGCT GACATTCAAT GAACCGTGGT GTATCGCCTT
Bpobglb GAGCGGATAA ACTGGTGGAA TACGATCAAT GAGCCTTATT GCGCCTCTAT
Cdcbgla GACAAAGTAA AAAAGTGGAT AACATTCAAT GAACCTTATT GCATTGCTTT
Ssobeta AGGACTGTTG TGAAGAGGAC TGAAA..AGG GATACGTTAG CTTAGGAGGT
1251 1300
Bpobgla TTTATCCAAT ATGCTGGGAG TTCATGCCCC GGGTCTGACG AATCTCCAGA
Bpobglb TTTGGGCTAT GGTACAGGAG AGCATGCCCC TGGCCATGAG AACTGGAGGG
Cdcbgla TTTAGGCTAC TTTCATGGAA TCCATGCACC AGGAATAAAA GATTTCAAAG
Ssobeta TACGGTCACG GATGTGAGAG GAATTCTGTA AGTTTAGCGG GATTACCAAC
1301 1350
Bpobgla CTGCGATTGA TGTAGGACAT CATCTGCTGG TTGCGCATGG CCTATCTGTA
Bpobglb AAGCCTTTAC TGCCGCCCAT CATATTCTGA TGTGTCATGG GATTGCCAGC
Cdcbgla TTGCAATGGA TGTTGTGCAC AGCCTCATGC TTTCTCATTT TAAGGTTGTA
Ssobeta CAGCGACTTC GGCTGGGAGT TCTTCCCAGA AGGTTTATAT GACGTTTTGA
1351 1400
Bpobgla CGCCGATTCC GCGAGCTTGG CACCAGTGGC CAGATCGGTA TCGCCCCAAA
Bpobglb AATTTGCACA AGGAGAAAGG GTTAACGGGT AAGATTGGCA TTACGTTGAA
Cdcbgla AAAGCTGTAA AAGAAAACAA TATTGATGTT GAGGTGGGAA TTACATTAAA
Ssobeta CGA....AAT ACTGGAATAG ATATCATCTC TATATGTACG TTACTGAAAA
1401 1450
Bpobgla TGTCTCCTGG GCTGTTCCTT ACAGCACTTC TGAGGAAGAT AAAGCGGCTT
Bpobglb CATGGAACAT GTGGATGCGG CTTCCGAGCG ACCCGAGGAC GTGGCTGCTG
Cdcbgla TTTAACCCCA GTCTACCTTC AGACAGAACG ACTTGGATAT AAGGTAAGCG
Ssobeta TGGTATTGCG GATGATGCCG ATTATCAAAG GCCCTATTAT TTAGTATCTC
1451 1500
Bpobgla GTGCACGCAC GAT....... .......... .TTCCCTGCA CAGTGACTGG
Bpobglb CCATTAGAAG AGA....... .......... .TGGCTTTAT TAATCGTTGG
Cdcbgla AAATTGAAAG AGAAATGGTT TCTTTGAGCA GCCAGCTTGA CAACCAACTT
Ssobeta ACGTTTATCA AGTTCATAGA GCAATAAATA GTGGTGCAGA TGTTAGAGGG
1501 1550
Bpobgla TTTCTCCAGC CTATTTATCA AGGCTCGTAT CCTCAGTTTT TGGTAGACTG
Bpobglb TTTGCGGAGC CATTGTTTAA CGGAAAGTAT CCTGAAGATA TGGTGGAATG
Cdcbgla TTCCTTGATC CAGTACTTAA AGGAAGCTAT CCACAAAAGC TGTTAGATTA
Ssobeta TATTTACATT GGTCTCTAGC TGATAATTA. .CGAATGGGC TTCAGGATTC
1551 1600
Bpobgla GTTT...... ...G...CGG AACAGGGAGC CACCGTACCT ATACAAGATG
Bpobglb GTAC...... ...GGAACGT ATCTGAATGG ATTGGATTTT GTACAGCCTG
Cdcbgla TCTTGTTCAA AAAGATTTGT TAGATAGCCA AAAAGCATTG AGCATGCAGC
Ssobeta TCTATGAGGT TTGGTCTGTT AAAGGTCGAT TACAACACTA AGAGACTATA
1601 1650
Bpobgla GAGATATGGA CATTATCGGT GAGCCAATTG ATATGATTGG TATCAATTAT
Bpobglb GTGATATGGA GCTGATTCAG CAACCGGGGG ATTTTTTGGG CATTAACTAT
Cdcbgla AGGAAGTAAA AGAAAATTTC ATCTTCCCTG ATTTTCTTGG TATCAACTAT
Ssobeta CTGGAGACCC TCAGCACTAG TATATAGGGA AATCGCCACA AATGGCGCAA
1651 1700
Bpobgla TATAGTATGT CGGTTAATCG AT....TTAA TCCGGAGGCA GGATTTCTTC
Bpobglb TATACCCGTA GCATCATTCG AT....CAAC GAACGACGCT TCGTTGCTGC
Cdcbgla TACACACGTG CCGTCAGGCT TTACGACGAA AATTCTAGCT GGATATTTCC
Ssobeta TAACTGATGA AATAGAGCAC TTAAATAGCG TACCTCCAGT AAAGCCATTA
1701 1750
Bpobgla AATCTGAAGA AATCAATATG GGACTACCTG TAACAGATAT CGGCTGGCCG
Bpobglb AAGTAGAGCA GGTTCACATG GAGGAGCCAG TAACGGACAT GGGATGGGAG
Cdcbgla AATAAGATGG GAACATCCTG CAGGAG.AAT ACACCGAGAT GGGCTGGGAA
Ssobeta AGGCACTAAA CTTTCTCAAG TCTCACTATA CCAAATGAGT TTTCTTTTAA
1751 1800
Bpobgla GTGGAGTCAC GTGGGCTGTA TGAGGTACTA CATTATTTGC AAAAATACGG
Bpobglb ATTCACCCTG AATCTTTTTA TAAGCTGCTG ACACGGATTG AGAAGGATTT
Cdcbgla GTGTTCCCGC AGGGGCTTTT CGATCTTTTG ATTTGGATT. ..AAAGAAAG
Ssobeta TCTTATTCTA ATCTCATTTT CATTAGATTG CAATACTTTC ATACCTTCTA
1801 1850
Bpobgla TAACA..... .TCGATATTT ACATCACAGA GAACGGGGCT TGTATCAATG
Bpobglb TAGCAAGGGC TTGCCCATTC TGATTACGGA AAATGGAGCA GCGATGAGGG
Cdcbgla TTACCCACAA ATTCCAATTT ATATAACAGA AAACGGTGCT GCTTATAACG
Ssobeta TATTATTTAT TTTGTACCTT TTGGGATCTA CACTTAATGT TAGCCTAATT
1851 1900
Bpobgla A...TGAGGT CGTAAACGGA AAGGTGCAAG ATGATCGTCG AATTTCCTAC
Bpobglb A...TGAACT GGTAAATGGA CAGATTGAGG ATACCGGGCG TCACGGCTAT
Cdcbgla ATATTGTAAC TGAAGATGGA AAAGTGCACG ATAGCAAAAG GATTGAGTAT
Ssobeta GGAAAGTCAT TTAGATTTAA TACTGTTACC AGTCCATCCC TTTTAATTAT
1901 1950
Bpobgla ATGCAGCAGC ATTTGGTGCA GGTGCACCGG ACAATTCATG ATGGTCTTCA
Bpobglb ATTGAAGAGC ATTTAAAGGC CTGTCATCGC TTCATTGAAG AGGGAGGTCA
Cdcbgla TTAAAACAGC ACTTTGAAGC AGCAAGAAAG GCAATTGAAA ATGGTGTGGA
Ssobeta TAATGAAAAT AAGAAGGGAT AAGTAGCGAT AGCCCTTATT CCGATATGG.
1951 2000
Bpobgla TGTTAAAGGC TATATGGCAT GGTCACTTTT GGACAATTTT GAGTGGGCAG
Bpobglb GCTCAAGGGG TATTTTGTCT GGTCTTTCCT TGATAACTTT GAATGGGCCT
Cdcbgla TTTGCGAGGC TATTTTGTGT GGTCTTTGAT GGACAATTTT GAATGGGCAA
Ssobeta TCTCCAACAA TATCCCTTAT TATCTGCCTT GCAACACT.. .....AGGGT
2001 2050
Bpobgla AGGGGTATAA TATGAGATTT GGCATGATTC ATGTCGATTT TCGCACACAG
Bpobglb GGGGCTACAG CAAGCGTTTT GGCATTGTGC ATATCAATTA CGAGACGCAG
Cdcbgla TGGGTTATAC AAAAAGGTTT GGAATTATAT ATGTGGATTA TGAAACCCAA
Ssobeta AGAACTCTGA AATCAGATAT GGTAGGTAAG TTGTAAGTGA TAGGACGTAA
2051 2100
Bpobgla GTCCGCACCC CCAAGGAAAG TTACTATTGG TATCGAAATG TAGTAAGTAA
Bpobglb GAACGGACTC CCAAACAAAG TGCGCTATGG TTCAAGCAAA TGATGGCGAA
Cdcbgla AAGAGAATCA AAAAAGACAG CTTCTATTTT TATCAGCAGT ATATAAAGGA
Ssobeta .........A CTTTAGAGTT AGAGTAAGTG TTCTGAAAGA CTACTGGGTG
2101 2150
Bpobgla TAACTGGTT. ......GGAG ACTAGACGCT AAACAAAGAG AAATGATCTG
Bpobglb GAACGGGTTT TAAATAGAAA AGGGGGATAC GATGCAGCCG TATTATTTTG
Cdcbgla AAATTCGTAA ATATAAATAA AGGCGGGCTT TTGGAGAAAT TCATTTTCTC
Ssobeta CAATTCGACA CCGTTATAGG CGTAAAGGAT TGGCGTAGCT CCGTTTAATG
2151 2200
Bpobgla AATATAAAGC AAATTTAGGT CTGCCTCCGC TCCCGTTTG. ......TTTA
Bpobglb ACAATCAAGG ACGTTTTGTG ATTGAAAATT TTGCGCATGC CAAGCCCTTT
Cdcbgla AAAAGCCCG. ..TTTTCTAT TTTCCATCCT TCATGTGAAA GTAGCCAAAT
Ssobeta AAAATATAGG TCCTACAGGG AAATTGGCTT GCCTCTTGTA ATATGACCAA
2201 2250
Bpobgla AATAGGAGGT CCTCTGGGGT AATAATAGCC AAGATGAATT ACAGATGGTT
Bpobglb TCCAGTTTCT TGCCCGGCAT TGCTGGTGTT CAGGGGATTC CCCTGTGGGC
Cdcbgla CTTTTTTTCA AGCCCACCGC TAAACCCACC TAAGGACAAA TCTGACTTGA
Ssobeta TAGAACGTTT TCCCATCCCT GGTTAACGCA TTGACACTAA CACTATCGTA
2251 2300
Bpobgla CTAGTATATA GAGACCGGCA GGAATAAAAA AATAAAAAAT GTGCATACTG
Bpobglb GTATTATGTT AATCGTGGAC AAGGAATTGC GAGCTTTGGT GTGGAGGATA
Cdcbgla CCACCCGATG GCATGGAACA ATTATCACAG CTGGATTTTT GCCAACAGCA
Ssobeta AATCAAGTTA CCGACACCAA GAATTTTCAG TGCAGTATCC CCCAAGACTT
2301 2350
Bpobgla AAAAAAATAC TTGGC..... .......... .......... ..........
Bpobglb AAAATGGAGC GATTATGGAA TTTTTTCCGG CTAACCGCAG CTATAGCCT.
Cdcbgla TTTCCAACAG CTCTTGCGCC CTGTGGTTTT CCAACTTTTT CTGCAAGCTC
Ssobeta CAATAAGCTT TTTAGCTGCA CTTGCTGTAA ACATTAAGTT AACTCCCCTA
2351 2400
Bpobgla .......... .......... .......... .......... ..........
Bpobglb .......... .......... .......... .......... ..........
Cdcbgla TCTGTAAGAA ATTACACTTC TAAATGGAAC TTTTATAAGT TCATTCCAAA
Ssobeta TTAAGTAAAT CCACAATATC TAGA...... .......... ..........
2401 2437
Bpobgla .......... .......... .......... .......
Bpobglb .......... .......... .......... .......
Cdcbgla CTCTTTTTTG AAACTCCGTC CCCTGCAGCT GAAGCTT
Ssobeta .......... .......... .......... .......