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Simtel MSDOS 1992 September
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HELP.JPR
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1989-07-09
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Welcome to JEPRS, the
|J|ournal &
|E|ditorial
|P|ersonal
|R|eference
|S|ystem
JEPRS is a database system designed to
manipulate a group of references entered by the
user. You can enter, display, modify, print,
or search any or all of the references in the
database. JEPRS (which is pronounced |Jeepers!|)
is a user friendly program that's menu driven.
This simply means that you don't have to
memorize a large number of infrequently used
commands; every command option is displayed on
the screen. If you have any questions about
the meaning of the special keys, you usually
have the option of pressing the |F1| key,
which will give you instant help.
≡ The first thing you see, assuming JEPRS
has found all of its files, is the Main Menu
(it's just to the left of this Help Screen).
This is the heart of the program. To select a
command, either type the first letter of that
command, or use the up and down arrow keys to
highlight one of the commands, and then press
|Enter|. For Help and Exit commands, you also
have the choice of using the function key
shown. If you're not sure what a command does,
enter it anyway and then press the |F1| key.
This will give you help with the current
command. (Help is always context-sensitive.)
Note that some function keys have the
same functions no matter what section of the
program you are using. For example, |Esc| will
always bring you back to the Main Menu, and
|F1| will always get you help. Keep in mind
that JEPRS has been designed to be easy to use
and easy to remember!
≡ JEPRS can be started with the following
command line options:
|JEPRS <format filename> /opt|
... where |<format filename>| is a valid file-
name for your format file, including a path if
necessary (e.g., |Format2.JPR| ...or...
|C:\JEPRS\FormatX.JPR|)
...and |/opt| is any combination of:
|/A| --> amber monitor with color video card
|/G| --> green monitor with color video card
|/B| --> turns blinking off in formatting
|/C| --> turns colors off in formatting
So if you want to use your format file
called "MyFormat.ZZZ", you hate blinking
characters, and you are using an amber monitor
with a CGA video adaptor, start JEPRS like this:
|JEPRS MyFormat.ZZZ /B/A|
≥ Welcome to the |S|earch menu. This command
allows you to search the entire database for one
or more words or phrases, such as author names,
keywords, or journal names. Because JEPRS sets
all the parameters shown on the right of the
screen to default values, all you really have to
enter is the search |T|erms. (More help is
available after you enter the |T|erms command.)
To start a search, enter the |T|erms you
wish to search for, then enter the |G|o command.
A variety of options are available that can
modify the results of your search:
|B|egin allows you to specify at what ref-
erence number the search will begin with.
|E|nd allows you to specify which reference
the searching will end with.
|M|atches allows you to specify the maximum
number of references that JEPRS should find in
the current search. |B|egin, |E|nd, and |M|atches
can be used together in order reduce the total
search time used; they are useful if you have
some idea of the total number of references you
want, or their location within the database.
≡ |C|ase determines whether the current
search is case-sensitive or case-insensitive.
If case-sensitive, then the terms are searched
for exactly as you type them. Case-insensitive
searches convert both the search terms you
enter, as well as the references in the data
base, to uppercase before comparing them. The
default is case-insensitive.
|O|utput allows you to specify where the
references found in a search are directed to.
The default is the screen, but you can turn on
any combination of screen, printer, text file,
and number file.
|S|ort determines whether the references
are sorted before being displayed. If |S|ort is
on, the references are sorted by first author
before being sent to the specified output. The
default is off.
ⁿ The search |T|erms are the field(s) you
wish to search through (e.g., |A|uthors or
|T|itles); they are displayed in the "Messages"
section of the screen. The simplest search
is just one term, but you can also combine
terms by separating them with operators (|+|
|-| & |/|) and parentheses.
An example of a simple search would be if
you were looking for all the articles written
by "Wright" in your database. To find them,
enter "|A|" at the "Enter Search:" prompt. Then
enter "|Wright|" on the next line. Note that
the "A" blinks to let you know which field the
text you're entering corresponds to. Once you
are back at the Search Menu, press |G|o to start
the search.
≡ The next level of complexity would be a
double search: you want to find all references
for articles written by "Wright" that also ap-
pear in the Journal of Cell Biology. At the
"Enter Search:" prompt, enter "|A+J|" (Author
And Journal). On the first blank line, enter
"|Wright|" (note that the "A" after "Enter
Search:" will blink to remind you this is the
field you are entering text for). On the 2nd
blank line, enter "|J Cell Biol|" (this time, the
"J" blinks as a reminder). Again, enter |G|o at
the Search Menu to start the search.
More complex searches are possible. To
search for articles written by Wright or Miranda
but not Farmer or Lin, enter "|(A/A)-(A/A)|" at
the "Enter Search:" prompt. Then enter all of
the authors' names in the correct order (the
letters will blink to remind you where you are).
Then |G|o at the Search Menu to start your
search.
≡ With one exception, all the text you enter
is searched for as just that: text. The excep-
tion is for the |Y|ears field. If you specify a
"|Y|" at the "Enter Search:" prompt, then JEPRS
will allow you to enter either a single year
(e.g., "1989") or a range of years ("1975-1984").
Note that you must specify the ENTIRE year; for
example, "1975-77" will give you a nonsense
answer; use "1975-1977" instead. The only short
cut allowed is that you may skip the first year
if you want to search for all references up to a
given year; that is, "-1975" is equivalent to
"1900-1975".
≤ You have chosen to modify your search.
This is done by entering a |+| (to signify that
you want to require the matches to have one
more specification) or a |-| (to signify that
you want to display matches that don't have a
specified word or phrase) followed by the first
letter of the field (e.g., |A|uthor, |T|itle, or
|J|ournal) that is to be searched.
JEPRS will then ask you to enter the word
or phrase that you want to search for. This
whole process is very similar to the initial
|T|erms command on the Search Menu, except that
here only one additional search term may be
specified each time.
You can modify each original search a
maximum of three times. The first time you
modify it, instructions appear on the Modify
Search screen; each additional time you modify
it, the previous modifications (terms and
search word(s)) are shown instead.
⌠
JEPRS provides you with the ability to
add to your database by reading in a file for-
matted according to the MedLine standard. This
standard is used by, among others, |PaperChase|.
Of course, you must already have a file that
contains references formatted this way; once you
do, they can be read in as follows:
All you have to do is know the name of the
file containing the MedLine-formatted reference
citations. Just type in the name of the file
and press |Enter|. JEPRS will automatically
convert the MedLine fields into appropriate text
for the JEPRS database.
Remember, too, that JEPRS can also output
your references in a MedLine format (though it's
not quite as extensive as the original MedLine
format, simply because JEPRS doesn't store all
the information that MedLine contains). To do
this, use format #11 on the Format Menu.
⌡ You now have the ability to view the
database one reference at a time. Just type
in the number of the reference you wish to see.
Or, you can press |PgUp| to see the previous
reference, or |PgDn| to see the next one.
|F8| will insert only the number of the
current reference into a Number File (see the
Main Menu's |O|ption command), for subsequent
formatting with the |F|ormat option on the
Main Menu.
Pressing |F9| will take the reference
currently displayed and print it on your
printer in a compact format.
|F10| will insert the current reference
into a Text File (see the |O|ption command on
the Main Menu).
As always, |Esc| will take you back to
the Main Menu.
÷ The |A|dd option allows you to add refer-
ences to your current database. Simply type in
the title, authors, journal, etc., just as the
screen shows. The authors should be entered
last name first, followed by a space and then
first initials; if more than one author,
separate the authors by commas, as follows:
|Miranda LM, Lin VK-O, Wright WE|
Note that you do not add an "and" or "&" before
the last author's name; JEPRS does that for you.
The arrow keys will move the cursor
around on the display. |Home| will take the
cursor to the first character of the line; |End|
will move you to the last character of the line.
|PgUp| will move the cursor to the title;
|PgDn| will move the cursor to the keywords.
|BackSpace| will delete the previous char-
acter (just like a typewriter), while pressing
|Delete| will delete the current character.
≡ |Insert| will change the display from
Insert to Overwrite mode or vice versa (you
can check the lower right corner of the
display to see which mode you are in). Insert
mode will move any characters to the right of
the cursor as you type. In Overwrite mode,
characters to the right of the cursor are
simply written over and erased.
When you have finished entering this
reference, press |Esc| to bring you to the menu
at the top of the screen. Use the arrow keys
to highlight any option, then press |Enter| to
select (or just type the first character of the
option). |S|ave will save this reference into
the database; |A|bandon will ignore the reference
you just typed; |R|eturn to edit allows you to go
back to the reference and edit it some more;
|H|elp will give you help with what to do.
After selecting |S|ave or |A|bandon, you can
then select |C|ontinue (in which case you can add
more references) or |M|ain menu to return to the
Main Menu.
≈ The |U|pdate option allows you to update
references, in case you made a mistake in your
original entry or new information becomes
available. Since JEPRS doesn't have a Delete
Reference function, the |U|pdate function can
be used to overwrite an old reference, and
replace it with a new one. The command keys
are exactly the same as the ones for the |A|dd
option, and are described below for your
convenience:
The arrow keys will move the cursor
around on the display. |Home| will take the
cursor to the first character of the line; |End|
will move you to the last character of the line.
|PgUp| will move the cursor to the title;
|PgDn| will move the cursor to the keywords.
|BackSpace| will delete the previous char-
acter (just like a typewriter), while pressing
|Delete| will delete the current character.
≡ |Insert| will change the display from
Insert to Overwrite mode or vice versa (you
can check the lower right corner of the
display to see which mode you are in). Insert
mode will move any characters to the right of
the cursor as you type. In Overwrite mode,
characters to the right of the cursor are
simply written over and erased.
When you have finished updating this
reference, press |Esc| to bring you to the menu
at the top of the screen. Use the arrow keys
to highlight any option, then press |Enter| to
select (or just type the first character of the
option). |S|ave will save this modified reference
into the database; |A|bandon will ignore the
changes you just made; |R|eturn to edit allows you
to go back to the reference and edit it some
more; |H|elp will give you help with what to do.
After selecting |S|ave or |A|bandon, you can
then select |C|ontinue (in which case you can
update more references) or |M|ain menu to return
to the Main Menu.
° One of JEPRS's most powerful functions is
its ability to format references in almost any
manner imaginable. This is done through the
|F|ormat option.
You are first asked where you want the
output to be sent (screen, printer, or disk
file). Then JEPRS displays the names of the
journals for which you have previously
programmed JEPRS (if you haven't done this
already, it is done by editing the Format File
[see the Main Menu |O|ptions]). Enter the number
that appears in front of the journal for which
you wish to format.
You are then asked for the source of the
references to format. You have 3 choices:
1) Keyboard (the default), in which case
you enter each number manually at the key-
board, after the previous one is formatted;
2) Number file (see the Main Menu |O|ptions)
which contains a series of reference numbers.
3) Reference file (all of the references).
≡ The Format File is a crucial input file
for JEPRS. There is a sample one included with
every disk I send out. It allows you to set
the journals for which JEPRS can format; it
allows you to give the codes for the printer,
for things such as underlining and boldface;
and it allows you to specify alternative
default names for the various files that JEPRS
reads and creates (see the Main Menu |O|ptions).
∙ The Main Menu |O|ptions allow you to modify
the pre-programmed defaults that are set either
by the Format File or (if you haven't specified
one) by JEPRS itself.
To select an option, use the up and down
arrow keys to move from field to field, then
press |Enter|. Or just type the first letter of
the field name.
"Reference file" refers to the main data-
base file where the references are kept.
"Key file" refers to the file that keeps
track of the position of the references in the
main database (reference) file.
"Format file" refers to the file that con-
tains the instructions for formatting the out-
put from the |F|ormat option on the Main Menu.
"Help file" is the file you're reading
now that contains help information.
"Text file" refers to a file that JEPRS
can create which will contain certain refer-
ences in an ASCII file. This is accomplished
in the |S|earch option and the |L|ist option by
pressing the |F10| key.
≡
"Number file" refers to a file containing
numbers specifying certain references from the
database. You can create this file yourself
with a text editor, or JEPRS can add reference
numbers to it by pressing the |F8| key in the
|S|earch and |L|ist options. JEPRS uses the
numbers in this file for formatting in the
|F|ormat option on the Main Menu.
"Drive and directory" refers to the DOS
disk and/or subdirectory where all of the above
files are located.
"Error/warning beep" refers to a beep that
JEPRS will make if it wants to alert you that
something has gone wrong. If you don't want to
hear any noise, just type |off| and JEPRS will
never beep at you.
"Ordering information" will present you
with information on how to order the latest
version of JEPRS if you want to update your
copy, or how to order your own copy if you are
currently using someone else's.
≡ "MedLine format file" allows you to add to
your database by reading in a file that is
formatted according to the MedLine standard
(e.g., those from PaperChase).
"Go to DOS" allows you to temporarily
return to MS-DOS. You can do this to run
another program or get a directory listing, for
example. Note that you |must| type |Exit| and then
press |Enter| to return to JEPRS. (You may mess
up your datafiles if you try to run JEPRS a
second time when you're in the "Go To DOS"
window!)
· JEPRS has found at least one successful
match for fields you entered. To continue view-
ing them on your screen, just keep pressing any
key to continue.
As always, |Esc| takes you back to the Main
Menu. Pressing |F1| brings up this Help screen.
Press |F3| if you want to forget about this
search and start all over again.
If you wish to modify this search, press
|F5|. Why? Let's say that this search has
yielded a lot more references than you want to
see; you can now restrict your search by further
checking those references |already found| to see
if they match another specification you provide
on the Modify Search Menu.
≡
|F8| will insert only the number of the
current reference into a Number File (see the
Main Menu's |O|ption command), for subsequent
formatting with the |F|ormat option on the
Main Menu.
Pressing |F9| will take the reference
currently displayed and print it on your
printer in a compact format.
|F10| will insert the current reference
into a Text File (see the |O|ption command on
the Main Menu).
√
To select any of the options, use the left
and right arrow keys to highlight the option you
want, then press |Enter|. Or, just press the
first letter of the option.
|S|ave reference will place the reference you
just edited into the database. |A|bandon refer-
ence causes JEPRS to ignore the edited text.
|R|eturn to edit will allow you to go back to the
reference and continue to edit it. |H|elp brings
up this help screen.