home *** CD-ROM | disk | FTP | other *** search
/ MacFormat 1994 August / August CD.bin / Shareware / Education / MacPattern 3.2 / Help Data next >
MacBinary  |  1993-12-07  |  85.6 KB  |  [MCPH/MCpt]

open in: MacOS 8.1     |     Win98     |     DOS

browse contents    |     view JSON data     |     view as text


This file was processed as: MacBinary (archive/macBinary).

ConfidenceProgramDetectionMatch TypeSupport
10% dexvert MacBinary (archive/macBinary) fallback Supported
100% file MacBinary II, inited, Sun Apr 8 15:48:15 1990, modified Tue Dec 7 15:53:20 1993, creator 'MCpt', type 'MCPH' "Help Data", at 0x80 87458 bytes resource Apple HFS/HFS+ resource fork, map offset 0x150a1, map length 0x501, data length 0x14fa1, at 16 0x00000002, nextResourceMap 0x4e5efc, fileRef 0x13d6, list offset 0x1c, name offset 0x292, 8 types, 0x444c4f47 'DLOG' * 1 resource offset 0x42 default (weak)
99% file data default
100% TrID MacBinary 2 default (weak)
100% siegfried fmt/1762 MacBinary (II) default
100% lsar MacBinary default


id metadata
keyvalue
macFileType[MCPH]
macFileCreator[MCpt]



hex view
+--------+-------------------------+-------------------------+--------+--------+
|00000000| 00 09 48 65 6c 70 20 44 | 61 74 61 00 00 00 00 00 |..Help D|ata.....|
|00000010| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000020| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000030| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000040| 00 4d 43 50 48 4d 43 70 | 74 01 00 00 00 00 00 00 |.MCPHMCp|t.......|
|00000050| 00 00 00 00 00 00 00 00 | 01 55 a2 a2 45 45 ff a9 |........|.U..EE..|
|00000060| 2a 9d c0 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |*.......|........|
|00000070| 00 00 00 00 00 00 00 00 | 00 00 81 81 a9 b0 00 00 |........|........|
|00000080| 00 00 01 00 00 01 50 a1 | 00 01 4f a1 00 00 05 01 |......P.|..O.....|
|00000090| 00 00 00 02 0d 49 6e 73 | 69 64 65 20 4d 61 63 20 |.....Ins|ide Mac |
|000000a0| 44 41 02 00 00 00 44 46 | 49 4c 44 4d 4f 56 01 00 |DA....DF|ILDMOV..|
|000000b0| 09 48 65 6c 70 20 44 61 | 74 61 02 00 00 00 4d 43 |.Help Da|ta....MC|
|000000c0| 50 48 4d 43 70 74 00 00 | 00 00 00 00 00 00 00 00 |PHMCpt..|........|
|000000d0| 00 00 4d 43 50 48 4d 43 | 70 74 00 00 00 00 00 00 |..MCPHMC|pt......|
|000000e0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000000f0| 00 00 aa 22 7e 40 00 00 | 00 00 00 01 55 a2 00 18 |..."~@..|....U...|
|00000100| 0a 2b 00 09 00 00 00 00 | 16 00 00 00 00 02 10 49 |.+......|.......I|
|00000110| 6e 76 69 73 69 48 44 4d | 61 69 6e 42 6f 33 62 33 |nvisiHDM|ainBo3b3|
|00000120| 02 00 00 00 00 00 00 00 | 00 00 00 00 40 00 00 00 |........|....@...|
|00000130| 00 00 00 00 00 00 00 86 | 00 00 00 00 00 80 00 00 |........|........|
|00000140| 02 00 00 00 00 00 00 00 | 00 00 00 00 a0 51 63 49 |........|.....QcI|
|00000150| a0 59 65 5b 00 00 00 00 | 00 00 00 00 00 00 00 00 |.Ye[....|........|
|00000160| 00 00 00 00 00 00 00 00 | 00 00 02 2f 00 01 00 00 |........|.../....|
|00000170| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000180| 00 00 00 19 00 26 00 0a | 01 40 01 f4 00 00 00 00 |.....&..|.@......|
|00000190| 00 00 00 00 00 01 01 2c | 04 48 65 6c 70 00 00 00 |.......,|.Help...|
|000001a0| 0c 00 52 00 56 00 f0 01 | bc 27 90 55 55 00 00 00 |..R.V...|.'.UU...|
|000001b0| 98 00 06 00 00 00 00 00 | f0 01 6b 01 04 01 a7 04 |........|..k.....|
|000001c0| 04 44 6f 6e 65 00 00 00 | 00 00 1d 01 3b 00 ac 01 |.Done...|....;...|
|000001d0| d6 00 02 2a 4e 00 00 00 | 00 00 06 00 08 01 16 01 |...*N...|........|
|000001e0| 34 00 00 00 00 00 00 00 | c6 01 91 00 da 01 cd 04 |4.......|........|
|000001f0| 04 4e 65 78 74 00 00 00 | 00 00 c6 01 41 00 da 01 |.Next...|....A...|
|00000200| 87 04 08 50 72 65 76 69 | 6f 75 73 00 00 00 00 00 |...Previ|ous.....|
|00000210| 0c 01 3d 00 1b 01 d5 88 | 14 53 65 6c 65 63 74 20 |..=.....|.Select |
|00000220| 41 20 48 65 6c 70 20 54 | 6f 70 69 63 3a 00 00 00 |A Help T|opic:...|
|00000230| 00 00 b0 01 4d 00 c4 01 | b9 88 0d 53 63 72 65 65 |....M...|...Scree|
|00000240| 6e 20 31 20 6f 66 20 31 | 3a 00 00 00 56 00 04 00 |n 1 of 1|:...V...|
|00000250| 00 00 00 00 80 01 18 00 | 94 01 54 04 02 4f 4b 00 |........|..T..OK.|
|00000260| 00 00 00 00 38 00 50 00 | 48 01 58 88 02 5e 30 00 |....8.P.|H.X..^0.|
|00000270| 00 00 00 00 48 00 50 00 | 58 01 58 88 02 5e 31 00 |....H.P.|X.X..^1.|
|00000280| 00 00 00 00 58 00 50 00 | 68 01 58 88 02 5e 32 00 |....X.P.|h.X..^2.|
|00000290| 00 00 00 00 20 00 50 00 | 30 00 80 88 06 45 72 72 |.... .P.|0....Err|
|000002a0| 6f 72 3a 00 00 00 83 0a | 46 69 72 73 74 20 6d 65 |or:.....|First me|
|000002b0| 6e 75 44 57 52 44 09 4c | 61 73 74 20 6d 65 6e 75 |nuDWRD.L|ast menu|
|000002c0| 44 57 52 44 09 6e 75 6d | 54 6f 70 69 63 73 5a 43 |DWRD.num|TopicsZC|
|000002d0| 4e 54 05 2a 2a 2a 2a 2a | 4c 53 54 43 0b 53 63 72 |NT.*****|LSTC.Scr|
|000002e0| 65 65 6e 20 54 79 70 65 | 54 4e 41 4d 0e 52 65 73 |een Type|TNAM.Res|
|000002f0| 6f 75 72 63 65 20 73 74 | 61 72 74 44 57 52 44 0c |ource st|artDWRD.|
|00000300| 52 65 73 6f 75 72 63 65 | 20 65 6e 64 44 57 52 44 |Resource| endDWRD|
|00000310| 0b 54 6f 70 69 63 20 74 | 69 74 6c 65 50 53 54 52 |.Topic t|itlePSTR|
|00000320| 05 2a 2a 2a 2a 2a 4c 53 | 54 45 00 00 03 fa 4d 61 |.*****LS|TE....Ma|
|00000330| 63 50 61 74 74 65 72 6e | 20 69 73 20 6e 6f 74 20 |cPattern| is not |
|00000340| 61 20 6e 6f 72 6d 61 6c | 20 73 65 71 75 65 6e 63 |a normal| sequenc|
|00000350| 65 20 61 6e 61 6c 79 73 | 69 73 20 70 72 6f 67 72 |e analys|is progr|
|00000360| 61 6d 2e 20 49 74 20 64 | 6f 65 73 20 6e 6f 74 20 |am. It d|oes not |
|00000370| 70 72 6f 76 69 64 65 20 | 74 68 65 20 73 74 61 6e |provide |the stan|
|00000380| 64 61 72 64 20 66 65 61 | 74 75 72 65 73 20 66 6f |dard fea|tures fo|
|00000390| 72 2c 20 65 2e 67 2e 2c | 20 63 6f 6d 70 6f 73 69 |r, e.g.,| composi|
|000003a0| 74 69 6f 6e 20 61 6e 61 | 6c 79 73 69 73 2c 20 73 |tion ana|lysis, s|
|000003b0| 65 63 6f 6e 64 61 72 79 | 20 73 74 72 75 63 74 75 |econdary| structu|
|000003c0| 72 65 20 70 72 65 64 69 | 63 74 69 6f 6e 2c 20 65 |re predi|ction, e|
|000003d0| 74 63 2e 20 49 6e 73 74 | 65 61 64 2c 20 69 74 20 |tc. Inst|ead, it |
|000003e0| 73 75 70 70 6c 65 6d 65 | 6e 74 73 20 73 74 61 6e |suppleme|nts stan|
|000003f0| 64 61 72 64 20 70 72 6f | 67 72 61 6d 73 20 62 79 |dard pro|grams by|
|00000400| 20 6f 66 66 65 72 69 6e | 67 20 74 6f 6f 6c 73 20 | offerin|g tools |
|00000410| 74 68 61 74 20 63 61 6e | 20 67 69 76 65 20 63 6c |that can| give cl|
|00000420| 75 65 73 20 74 6f 20 74 | 68 65 20 66 75 6e 63 74 |ues to t|he funct|
|00000430| 69 6f 6e 73 20 6f 66 20 | 6e 65 77 6c 79 20 64 69 |ions of |newly di|
|00000440| 73 63 6f 76 65 72 65 64 | 20 70 72 6f 74 65 69 6e |scovered| protein|
|00000450| 73 2e 20 0d 0d 4d 61 63 | 50 61 74 74 65 72 6e 20 |s. ..Mac|Pattern |
|00000460| 61 6c 6c 6f 77 73 20 79 | 6f 75 20 74 6f 20 75 73 |allows y|ou to us|
|00000470| 65 20 74 68 65 20 50 52 | 4f 53 49 54 45 20 61 6e |e the PR|OSITE an|
|00000480| 64 20 42 4c 4f 43 4b 53 | 20 64 61 74 61 62 61 73 |d BLOCKS| databas|
|00000490| 65 73 20 28 6f 72 20 61 | 6e 79 20 6f 74 68 65 72 |es (or a|ny other|
|000004a0| 20 64 61 74 61 62 61 73 | 65 73 20 77 69 74 68 20 | databas|es with |
|000004b0| 74 68 65 20 73 61 6d 65 | 20 66 6f 72 6d 61 74 29 |the same| format)|
|000004c0| 20 66 6f 72 20 73 65 61 | 72 63 68 69 6e 67 20 70 | for sea|rching p|
|000004d0| 72 6f 74 65 69 6e 20 28 | 61 6e 64 20 44 4e 41 29 |rotein (|and DNA)|
|000004e0| 20 73 65 71 75 65 6e 63 | 65 73 20 66 6f 72 20 74 | sequenc|es for t|
|000004f0| 68 65 20 6f 63 63 75 72 | 72 65 6e 63 65 20 6f 66 |he occur|rence of|
|00000500| 20 6b 6e 6f 77 6e 20 70 | 61 74 74 65 72 6e 73 20 | known p|atterns |
|00000510| 6f 72 20 73 69 6d 69 6c | 61 72 69 74 69 65 73 20 |or simil|arities |
|00000520| 74 6f 20 70 72 6f 74 65 | 69 6e 20 62 6c 6f 63 6b |to prote|in block|
|00000530| 73 2e 20 59 6f 75 20 6d | 61 79 20 73 65 61 72 63 |s. You m|ay searc|
|00000540| 68 20 66 6f 72 20 61 6c | 6c 20 65 6e 74 72 69 65 |h for al|l entrie|
|00000550| 73 20 69 6e 20 74 68 65 | 20 64 61 74 61 62 61 73 |s in the| databas|
|00000560| 65 2c 20 66 6f 72 20 73 | 65 6c 65 63 74 65 64 20 |e, for s|elected |
|00000570| 65 6e 74 72 69 65 73 20 | 6f 72 20 79 6f 75 20 63 |entries |or you c|
|00000580| 61 6e 20 63 72 65 61 74 | 65 20 d2 70 61 74 74 65 |an creat|e .patte|
|00000590| 72 6e 20 73 65 74 73 d3 | 2e 20 49 6e 20 61 64 64 |rn sets.|. In add|
|000005a0| 69 74 69 6f 6e 20 74 6f | 20 69 74 73 20 73 65 61 |ition to| its sea|
|000005b0| 72 63 68 69 6e 67 20 63 | 61 70 61 62 69 6c 69 74 |rching c|apabilit|
|000005c0| 69 65 73 2c 20 4d 61 63 | 50 61 74 74 65 72 6e 20 |ies, Mac|Pattern |
|000005d0| 61 6c 73 6f 20 70 72 6f | 76 69 64 65 73 20 61 6e |also pro|vides an|
|000005e0| 20 69 6e 74 65 67 72 61 | 74 65 64 2c 20 70 6f 77 | integra|ted, pow|
|000005f0| 65 72 66 75 6c 20 64 61 | 74 61 62 61 73 65 20 62 |erful da|tabase b|
|00000600| 72 6f 77 73 65 72 20 74 | 6f 6f 6c 2e 20 49 6e 64 |rowser t|ool. Ind|
|00000610| 69 76 69 64 75 61 6c 20 | 64 61 74 61 62 61 73 65 |ividual |database|
|00000620| 20 65 6e 74 72 69 65 73 | 20 63 61 6e 20 62 65 20 | entries| can be |
|00000630| 65 61 73 69 6c 79 20 61 | 63 63 65 73 73 65 64 20 |easily a|ccessed |
|00000640| 61 6e 64 20 74 68 65 20 | 63 6f 6d 70 6c 65 74 65 |and the |complete|
|00000650| 20 69 6e 66 6f 72 6d 61 | 74 69 6f 6e 20 73 74 6f | informa|tion sto|
|00000660| 72 65 64 20 69 6e 20 74 | 68 65 20 64 61 74 61 62 |red in t|he datab|
|00000670| 61 73 65 20 63 61 6e 20 | 62 65 20 76 69 65 77 65 |ase can |be viewe|
|00000680| 64 20 6f 6e 20 73 63 72 | 65 65 6e 2c 20 70 72 69 |d on scr|een, pri|
|00000690| 6e 74 65 64 2c 20 65 78 | 74 72 61 63 74 65 64 20 |nted, ex|tracted |
|000006a0| 74 6f 20 64 69 73 6b 20 | 66 69 6c 65 73 2c 20 65 |to disk |files, e|
|000006b0| 74 63 2e 0d 0d 54 68 65 | 20 70 72 6f 76 69 73 69 |tc...The| provisi|
|000006c0| 6f 6e 20 6f 66 20 6d 65 | 74 68 6f 64 73 20 66 6f |on of me|thods fo|
|000006d0| 72 20 69 64 65 6e 74 69 | 66 69 63 61 74 69 6f 6e |r identi|fication|
|000006e0| 20 6f 66 20 73 74 61 74 | 69 73 74 69 63 61 6c 6c | of stat|isticall|
|000006f0| 79 20 73 69 67 6e 69 66 | 69 63 61 6e 74 20 73 65 |y signif|icant se|
|00000700| 71 75 65 6e 63 65 20 66 | 65 61 74 75 72 65 73 20 |quence f|eatures |
|00000710| 69 73 20 73 74 69 6c 6c | 20 65 78 70 65 72 69 6d |is still| experim|
|00000720| 65 6e 74 61 6c 2e 0d 0d | 00 00 06 70 4d 61 63 50 |ental...|...pMacP|
|00000730| 61 74 74 65 72 6e 20 77 | 61 73 20 6f 72 69 67 69 |attern w|as origi|
|00000740| 6e 61 6c 6c 79 20 64 65 | 76 65 6c 6f 70 65 64 20 |nally de|veloped |
|00000750| 74 6f 20 75 74 69 6c 69 | 73 65 20 74 68 65 20 50 |to utili|se the P|
|00000760| 52 4f 53 49 54 45 20 70 | 61 74 74 65 72 6e 20 64 |ROSITE p|attern d|
|00000770| 61 74 61 62 61 73 65 20 | 66 6f 72 20 74 68 65 20 |atabase |for the |
|00000780| 41 70 70 6c 65 20 4d 61 | 63 69 6e 74 6f 73 68 2e |Apple Ma|cintosh.|
|00000790| 20 0d 0d 54 68 65 20 69 | 64 65 6e 74 69 66 69 63 | ..The i|dentific|
|000007a0| 61 74 69 6f 6e 20 6f 66 | 20 63 6f 6e 73 65 72 76 |ation of| conserv|
|000007b0| 65 64 20 73 68 6f 72 74 | 20 73 74 72 65 74 63 68 |ed short| stretch|
|000007c0| 65 73 20 6f 66 20 72 65 | 73 69 64 75 65 73 20 28 |es of re|sidues (|
|000007d0| 73 6f 2d 63 61 6c 6c 65 | 64 20 6d 6f 74 69 66 73 |so-calle|d motifs|
|000007e0| 20 6f 72 20 70 61 74 74 | 65 72 6e 73 29 20 63 61 | or patt|erns) ca|
|000007f0| 6e 20 62 65 20 74 68 65 | 20 66 69 72 73 74 20 73 |n be the| first s|
|00000800| 74 65 70 20 69 6e 20 66 | 69 6e 64 69 6e 67 20 61 |tep in f|inding a|
|00000810| 20 62 69 6f 6c 6f 67 69 | 63 61 6c 20 72 6f 6c 65 | biologi|cal role|
|00000820| 20 66 6f 72 20 61 20 6e | 65 77 6c 79 20 64 65 74 | for a n|ewly det|
|00000830| 65 72 6d 69 6e 65 64 20 | 70 72 6f 74 65 69 6e 20 |ermined |protein |
|00000840| 73 65 71 75 65 6e 63 65 | 2e 20 54 68 65 73 65 20 |sequence|. These |
|00000850| 70 61 74 74 65 72 6e 73 | 20 66 72 65 71 75 65 6e |patterns| frequen|
|00000860| 74 6c 79 20 63 6f 72 72 | 65 73 70 6f 6e 64 20 74 |tly corr|espond t|
|00000870| 6f 20 66 75 6e 63 74 69 | 6f 6e 61 6c 20 69 6d 70 |o functi|onal imp|
|00000880| 6f 72 74 61 6e 74 20 72 | 65 67 69 6f 6e 73 20 6f |ortant r|egions o|
|00000890| 66 20 61 20 70 72 6f 74 | 65 69 6e 2c 20 66 6f 72 |f a prot|ein, for|
|000008a0| 20 69 6e 73 74 61 6e 63 | 65 2c 20 63 61 74 61 6c | instanc|e, catal|
|000008b0| 79 74 69 63 20 73 69 74 | 65 73 2c 20 44 4e 41 2d |ytic sit|es, DNA-|
|000008c0| 62 69 6e 64 69 6e 67 20 | 73 69 74 65 73 2c 20 6f |binding |sites, o|
|000008d0| 72 20 74 61 72 67 65 74 | 20 70 65 70 74 69 64 65 |r target| peptide|
|000008e0| 73 2e 20 54 68 65 20 64 | 65 74 65 63 74 69 6f 6e |s. The d|etection|
|000008f0| 20 6f 66 20 61 20 6b 6e | 6f 77 6e 20 73 65 71 75 | of a kn|own sequ|
|00000900| 65 6e 63 65 20 70 61 74 | 74 65 72 6e 20 63 61 6e |ence pat|tern can|
|00000910| 20 74 68 65 72 65 66 6f | 72 65 20 69 6d 6d 65 64 | therefo|re immed|
|00000920| 69 61 74 65 6c 79 20 73 | 75 67 67 65 73 74 20 61 |iately s|uggest a|
|00000930| 20 70 72 6f 74 65 69 6e | 20 66 75 6e 63 74 69 6f | protein| functio|
|00000940| 6e 20 61 6e 64 20 64 69 | 72 65 63 74 20 66 75 72 |n and di|rect fur|
|00000950| 74 68 65 72 20 65 78 70 | 65 72 69 6d 65 6e 74 61 |ther exp|erimenta|
|00000960| 6c 20 77 6f 72 6b 2e 0d | 0d 41 6e 20 65 78 63 65 |l work..|.An exce|
|00000970| 6c 6c 65 6e 74 20 64 61 | 74 61 62 61 73 65 20 6f |llent da|tabase o|
|00000980| 66 20 70 72 6f 74 65 69 | 6e 20 70 61 74 74 65 72 |f protei|n patter|
|00000990| 6e 73 20 69 73 20 6d 61 | 69 6e 74 61 69 6e 65 64 |ns is ma|intained|
|000009a0| 20 62 79 20 41 6d 6f 73 | 20 42 61 69 72 6f 63 68 | by Amos| Bairoch|
|000009b0| 2c 20 55 6e 69 76 65 72 | 73 69 74 79 20 6f 66 20 |, Univer|sity of |
|000009c0| 47 65 6e 65 76 61 3a 20 | 50 52 4f 53 49 54 45 20 |Geneva: |PROSITE |
|000009d0| 28 42 61 69 72 6f 63 68 | 2c 20 31 39 39 32 29 2e |(Bairoch|, 1992).|
|000009e0| 20 54 68 69 73 20 64 61 | 74 61 62 61 73 65 20 69 | This da|tabase i|
|000009f0| 73 20 61 76 61 69 6c 61 | 62 6c 65 20 69 6e 20 63 |s availa|ble in c|
|00000a00| 6f 6d 70 75 74 65 72 2d | 72 65 61 64 61 62 6c 65 |omputer-|readable|
|00000a10| 20 66 6f 72 6d 20 66 72 | 6f 6d 20 45 4d 42 4c 20 | form fr|om EMBL |
|00000a20| 61 6e 64 20 73 65 76 65 | 72 61 6c 20 6f 74 68 65 |and seve|ral othe|
|00000a30| 72 20 73 6f 75 72 63 65 | 73 2e 20 49 74 20 64 6f |r source|s. It do|
|00000a40| 65 73 20 6e 6f 74 20 6f | 6e 6c 79 20 63 6f 6e 74 |es not o|nly cont|
|00000a50| 61 69 6e 20 61 62 6f 75 | 74 20 38 30 30 20 64 69 |ain abou|t 800 di|
|00000a60| 66 66 65 72 65 6e 74 20 | 65 6e 74 72 69 65 73 20 |fferent |entries |
|00000a70| 62 75 74 20 61 6c 73 6f | 20 69 6e 63 6c 75 64 65 |but also| include|
|00000a80| 73 20 64 65 74 61 69 6c | 65 64 20 74 65 78 74 75 |s detail|ed textu|
|00000a90| 61 6c 20 69 6e 66 6f 72 | 6d 61 74 69 6f 6e 20 61 |al infor|mation a|
|00000aa0| 62 6f 75 74 20 61 6c 6c | 20 74 68 65 73 65 20 70 |bout all| these p|
|00000ab0| 61 74 74 65 72 6e 73 2e | 0d 0d 00 48 65 72 65 20 |atterns.|...Here |
|00000ac0| 69 73 20 61 20 74 79 70 | 69 63 61 6c 20 65 78 61 |is a typ|ical exa|
|00000ad0| 6d 70 6c 65 20 6f 66 20 | 61 20 50 52 4f 53 49 54 |mple of |a PROSIT|
|00000ae0| 45 20 70 61 74 74 65 72 | 6e 2c 20 41 44 48 5f 5a |E patter|n, ADH_Z|
|00000af0| 49 4e 43 3a 0d 50 41 20 | 20 20 47 2d 48 2d 45 2d |INC:.PA | G-H-E-|
|00000b00| 78 28 32 29 2d 47 2d 78 | 28 35 29 2d 47 2d 78 28 |x(2)-G-x|(5)-G-x(|
|00000b10| 32 29 2d 5b 56 43 5d 2e | 0d 0d 53 70 65 6c 6c 65 |2)-[VC].|..Spelle|
|00000b20| 64 20 6f 75 74 20 74 68 | 69 73 20 6d 65 61 6e 73 |d out th|is means|
|00000b30| 3a 20 61 20 47 2c 20 66 | 6f 6c 6c 6f 77 65 64 20 |: a G, f|ollowed |
|00000b40| 62 79 20 61 6e 20 48 20 | 61 6e 64 20 61 6e 20 45 |by an H |and an E|
|00000b50| 2c 20 74 68 65 6e 20 61 | 6e 79 20 74 77 6f 20 72 |, then a|ny two r|
|00000b60| 65 73 69 64 75 65 73 2c | 20 61 20 47 2c 20 61 6e |esidues,| a G, an|
|00000b70| 79 20 66 69 76 65 20 72 | 65 73 69 64 75 65 73 2c |y five r|esidues,|
|00000b80| 20 61 20 47 20 61 67 61 | 69 6e 2c 20 61 6e 64 20 | a G aga|in, and |
|00000b90| 61 66 74 65 72 20 74 77 | 6f 20 6d 6f 72 65 20 72 |after tw|o more r|
|00000ba0| 65 73 69 64 75 65 73 20 | 65 69 74 68 65 72 20 61 |esidues |either a|
|00000bb0| 20 56 20 6f 72 20 61 20 | 43 2e 0d 0d 53 6f 20 69 | V or a |C...So i|
|00000bc0| 66 20 79 6f 75 72 20 73 | 65 71 75 65 6e 63 65 20 |f your s|equence |
|00000bd0| 63 6f 6e 74 61 69 6e 73 | 2c 20 65 2e 67 2e 2c 20 |contains|, e.g., |
|00000be0| 47 48 45 41 4c 47 41 47 | 43 54 43 47 54 53 43 2c |GHEALGAG|CTCGTSC,|
|00000bf0| 20 4d 61 63 50 61 74 74 | 65 72 6e 20 77 69 6c 6c | MacPatt|ern will|
|00000c00| 20 72 65 70 6f 72 74 20 | 61 20 70 61 74 74 65 72 | report |a patter|
|00000c10| 6e 20 6d 61 74 63 68 2c | 20 61 6e 64 20 69 74 20 |n match,| and it |
|00000c20| 69 73 20 71 75 69 74 65 | 20 6c 69 6b 65 6c 79 20 |is quite| likely |
|00000c30| 74 68 61 74 20 79 6f 75 | 72 20 70 72 6f 74 65 69 |that you|r protei|
|00000c40| 6e 20 69 73 20 61 20 5a | 69 6e 63 2d 63 6f 6e 74 |n is a Z|inc-cont|
|00000c50| 61 69 6e 69 6e 67 20 61 | 6c 63 6f 68 6f 6c 20 64 |aining a|lcohol d|
|00000c60| 65 68 79 64 72 6f 67 65 | 6e 61 73 65 2e 20 49 66 |ehydroge|nase. If|
|00000c70| 20 79 6f 75 20 75 73 65 | 20 4d 61 63 50 61 74 74 | you use| MacPatt|
|00000c80| 65 72 6e 20 74 6f 20 65 | 78 61 6d 69 6e 65 20 74 |ern to e|xamine t|
|00000c90| 68 65 20 41 44 48 5f 5a | 49 4e 43 20 65 6e 74 72 |he ADH_Z|INC entr|
|00000ca0| 79 20 61 6e 64 20 69 74 | 73 20 64 6f 63 75 6d 65 |y and it|s docume|
|00000cb0| 6e 74 61 74 69 6f 6e 2c | 20 79 6f 75 20 77 69 6c |ntation,| you wil|
|00000cc0| 6c 20 66 69 6e 64 20 74 | 68 61 74 20 74 68 69 73 |l find t|hat this|
|00000cd0| 20 70 61 74 74 65 72 6e | 20 69 64 65 6e 74 69 66 | pattern| identif|
|00000ce0| 69 65 73 20 61 6c 6c 20 | 6b 6e 6f 77 6e 20 5a 69 |ies all |known Zi|
|00000cf0| 6e 63 2d 63 6f 6e 74 61 | 69 6e 69 6e 67 20 61 6c |nc-conta|ining al|
|00000d00| 63 6f 68 6f 6c 20 64 65 | 68 79 64 72 6f 67 65 6e |cohol de|hydrogen|
|00000d10| 61 73 65 73 20 69 6e 20 | 53 57 49 53 53 2d 50 52 |ases in |SWISS-PR|
|00000d20| 4f 54 20 61 6e 64 20 6e | 6f 20 75 6e 72 65 6c 61 |OT and n|o unrela|
|00000d30| 74 65 64 20 70 72 6f 74 | 65 69 6e 73 2c 20 77 68 |ted prot|eins, wh|
|00000d40| 69 63 68 20 6d 61 6b 65 | 73 20 69 74 20 65 76 65 |ich make|s it eve|
|00000d50| 6e 20 6d 6f 72 65 20 6c | 69 6b 65 6c 79 20 74 68 |n more l|ikely th|
|00000d60| 61 74 20 79 6f 75 72 20 | 73 65 71 75 65 6e 63 65 |at your |sequence|
|00000d70| 20 69 73 20 69 6e 64 65 | 65 64 20 61 20 6d 65 6d | is inde|ed a mem|
|00000d80| 62 65 72 20 6f 66 20 74 | 68 69 73 20 70 72 6f 74 |ber of t|his prot|
|00000d90| 65 69 6e 20 66 61 6d 69 | 6c 79 2e 0d 00 00 00 f3 |ein fami|ly......|
|00000da0| 49 66 20 79 6f 75 20 70 | 75 62 6c 69 73 68 20 72 |If you p|ublish r|
|00000db0| 65 73 75 6c 74 73 20 6f | 62 74 61 69 6e 65 64 20 |esults o|btained |
|00000dc0| 77 69 74 68 20 74 68 65 | 20 68 65 6c 70 20 6f 66 |with the| help of|
|00000dd0| 20 74 68 69 73 20 70 72 | 6f 67 72 61 6d 2c 20 70 | this pr|ogram, p|
|00000de0| 6c 65 61 73 65 20 63 69 | 74 65 20 74 68 65 20 66 |lease ci|te the f|
|00000df0| 6f 6c 6c 6f 77 69 6e 67 | 20 70 75 62 6c 69 63 61 |ollowing| publica|
|00000e00| 74 69 6f 6e 3a 0d 0d 20 | 20 20 20 20 20 20 20 46 |tion:.. | F|
|00000e10| 75 63 68 73 2c 20 52 2e | 20 28 31 39 39 31 29 20 |uchs, R.| (1991) |
|00000e20| 4d 61 63 50 61 74 74 65 | 72 6e 3a 20 50 72 6f 74 |MacPatte|rn: Prot|
|00000e30| 65 69 6e 20 70 61 74 74 | 65 72 6e 0d 20 20 20 20 |ein patt|ern. |
|00000e40| 20 20 20 20 73 65 61 72 | 63 68 69 6e 67 20 6f 6e | sear|ching on|
|00000e50| 20 74 68 65 20 41 70 70 | 6c 65 20 4d 61 63 69 6e | the App|le Macin|
|00000e60| 74 6f 73 68 2e 0d 20 20 | 20 20 20 20 20 20 43 6f |tosh.. | Co|
|00000e70| 6d 70 75 74 2e 20 41 70 | 70 6c 69 63 2e 20 42 69 |mput. Ap|plic. Bi|
|00000e80| 6f 73 63 69 2e 20 37 2c | 20 31 30 35 2d 31 30 36 |osci. 7,| 105-106|
|00000e90| 2e 0d 0d 00 00 02 6d 41 | 6c 74 68 6f 75 67 68 20 |......mA|lthough |
|00000ea0| 74 68 65 20 61 75 74 68 | 6f 72 20 69 73 20 61 66 |the auth|or is af|
|00000eb0| 66 69 6c 69 61 74 65 64 | 20 77 69 74 68 20 74 68 |filiated| with th|
|00000ec0| 65 20 45 4d 42 4c 20 44 | 61 74 61 20 4c 69 62 72 |e EMBL D|ata Libr|
|00000ed0| 61 72 79 2c 20 4d 61 63 | 50 61 74 74 65 72 6e 20 |ary, Mac|Pattern |
|00000ee0| 73 74 61 72 74 65 64 20 | 6f 66 66 20 61 73 20 61 |started |off as a|
|00000ef0| 20 70 72 69 76 61 74 65 | 20 72 65 73 65 61 72 63 | private| researc|
|00000f00| 68 20 70 72 6f 6a 65 63 | 74 20 61 6e 64 20 69 73 |h projec|t and is|
|00000f10| 20 6e 6f 20 6f 66 66 69 | 63 69 61 6c 20 45 4d 42 | no offi|cial EMB|
|00000f20| 4c 20 44 61 74 61 20 4c | 69 62 72 61 72 79 20 70 |L Data L|ibrary p|
|00000f30| 72 6f 64 75 63 74 2e 20 | 54 68 65 72 65 66 6f 72 |roduct. |Therefor|
|00000f40| 65 2c 20 74 68 65 20 44 | 61 74 61 20 4c 69 62 72 |e, the D|ata Libr|
|00000f50| 61 72 79 20 69 73 20 69 | 6e 20 6e 6f 20 77 61 79 |ary is i|n no way|
|00000f60| 20 72 65 73 70 6f 6e 73 | 69 62 6c 65 20 66 6f 72 | respons|ible for|
|00000f70| 20 61 6e 79 20 70 72 6f | 62 6c 65 6d 73 20 74 68 | any pro|blems th|
|00000f80| 61 74 20 6d 69 67 68 74 | 20 6f 63 63 75 72 20 77 |at might| occur w|
|00000f90| 68 65 6e 20 75 73 69 6e | 67 20 74 68 69 73 20 70 |hen usin|g this p|
|00000fa0| 72 6f 67 72 61 6d 20 61 | 6e 64 20 63 61 6e 6e 6f |rogram a|nd canno|
|00000fb0| 74 20 70 72 6f 76 69 64 | 65 20 61 6e 79 20 73 75 |t provid|e any su|
|00000fc0| 70 70 6f 72 74 2e 0d 0d | 48 6f 77 65 76 65 72 2c |pport...|However,|
|00000fd0| 20 49 20 61 6d 20 77 69 | 6c 6c 69 6e 67 20 74 6f | I am wi|lling to|
|00000fe0| 20 6d 61 69 6e 74 61 69 | 6e 20 61 6e 64 20 69 6d | maintai|n and im|
|00000ff0| 70 72 6f 76 65 20 74 68 | 69 73 20 70 72 6f 67 72 |prove th|is progr|
|00001000| 61 6d 2c 20 73 6f 20 66 | 65 65 6c 20 66 72 65 65 |am, so f|eel free|
|00001010| 20 74 6f 20 63 6f 6e 74 | 61 63 74 20 6d 65 20 64 | to cont|act me d|
|00001020| 69 72 65 63 74 6c 79 20 | 77 69 74 68 20 63 6f 6d |irectly |with com|
|00001030| 6d 65 6e 74 73 2c 20 62 | 75 67 20 72 65 70 6f 72 |ments, b|ug repor|
|00001040| 74 73 2c 20 71 75 65 73 | 74 69 6f 6e 73 2c 20 65 |ts, ques|tions, e|
|00001050| 74 63 2e 2e 2e 20 50 6c | 65 61 73 65 2c 20 75 73 |tc... Pl|ease, us|
|00001060| 65 20 65 6c 65 63 74 72 | 6f 6e 69 63 20 6d 61 69 |e electr|onic mai|
|00001070| 6c 20 69 66 20 70 6f 73 | 73 69 62 6c 65 2e 0d 0d |l if pos|sible...|
|00001080| 45 2d 6d 61 69 6c 20 61 | 64 64 72 65 73 73 3a 20 |E-mail a|ddress: |
|00001090| 46 75 63 68 73 40 45 4d | 42 4c 2d 48 65 69 64 65 |Fuchs@EM|BL-Heide|
|000010a0| 6c 62 65 72 67 2e 44 45 | 2e 0d 0d 50 6f 73 74 61 |lberg.DE|...Posta|
|000010b0| 6c 20 61 64 64 72 65 73 | 73 3a 0d 0d 52 61 69 6e |l addres|s:..Rain|
|000010c0| 65 72 20 46 75 63 68 73 | 0d 45 4d 42 4c 20 44 61 |er Fuchs|.EMBL Da|
|000010d0| 74 61 20 4c 69 62 72 61 | 72 79 0d 50 6f 73 74 66 |ta Libra|ry.Postf|
|000010e0| 61 63 68 20 31 30 2e 32 | 32 30 39 0d 36 39 30 31 |ach 10.2|209.6901|
|000010f0| 32 20 48 65 69 64 65 6c | 62 65 72 67 0d 47 65 72 |2 Heidel|berg.Ger|
|00001100| 6d 61 6e 79 00 00 02 61 | 41 6c 6c 20 72 69 67 68 |many...a|All righ|
|00001110| 74 73 20 61 72 65 20 72 | 65 73 65 72 76 65 64 20 |ts are r|eserved |
|00001120| 28 63 6f 70 79 72 69 67 | 68 74 20 a9 20 31 39 39 |(copyrig|ht . 199|
|00001130| 30 2d 31 39 39 33 29 20 | 62 79 20 52 61 69 6e 65 |0-1993) |by Raine|
|00001140| 72 20 46 75 63 68 73 2e | 0d 0d 54 68 69 73 20 70 |r Fuchs.|..This p|
|00001150| 72 6f 67 72 61 6d 20 6d | 61 79 20 62 65 20 66 72 |rogram m|ay be fr|
|00001160| 65 65 6c 79 20 63 6f 70 | 69 65 64 20 61 6e 64 20 |eely cop|ied and |
|00001170| 72 65 64 69 73 74 72 69 | 62 75 74 65 64 20 77 69 |redistri|buted wi|
|00001180| 74 68 6f 75 74 20 70 72 | 69 6f 72 20 70 65 72 6d |thout pr|ior perm|
|00001190| 69 73 73 69 6f 6e 2c 20 | 70 72 6f 76 69 64 65 64 |ission, |provided|
|000011a0| 20 74 68 61 74 20 74 68 | 65 20 73 6f 66 74 77 61 | that th|e softwa|
|000011b0| 72 65 20 61 6e 64 20 74 | 68 65 20 64 6f 63 75 6d |re and t|he docum|
|000011c0| 65 6e 74 61 74 69 6f 6e | 20 61 72 65 20 61 6c 77 |entation| are alw|
|000011d0| 61 79 73 20 62 75 6e 64 | 6c 65 64 20 74 6f 67 65 |ays bund|led toge|
|000011e0| 74 68 65 72 2c 20 69 6e | 20 77 68 6f 6c 65 20 61 |ther, in| whole a|
|000011f0| 6e 64 20 75 6e 63 68 61 | 6e 67 65 64 2e 20 41 70 |nd uncha|nged. Ap|
|00001200| 70 65 6e 64 69 78 20 41 | 20 6f 66 20 74 68 69 73 |pendix A| of this|
|00001210| 20 6d 61 6e 75 61 6c 20 | 6c 69 73 74 73 20 61 6c | manual |lists al|
|00001220| 6c 20 66 69 6c 65 73 20 | 74 68 61 74 20 63 6f 6d |l files |that com|
|00001230| 70 72 69 73 65 20 74 68 | 65 20 4d 61 63 50 61 74 |prise th|e MacPat|
|00001240| 74 65 72 6e 20 64 69 73 | 74 72 69 62 75 74 69 6f |tern dis|tributio|
|00001250| 6e 20 70 61 63 6b 61 67 | 65 2e 0d 0d 4d 61 63 50 |n packag|e...MacP|
|00001260| 61 74 74 65 72 6e 20 6d | 61 79 20 6e 6f 74 20 62 |attern m|ay not b|
|00001270| 65 20 73 6f 6c 64 20 6f | 72 20 6f 66 66 65 72 65 |e sold o|r offere|
|00001280| 64 20 66 6f 72 20 73 61 | 6c 65 2c 20 6f 72 20 62 |d for sa|le, or b|
|00001290| 75 6e 64 6c 65 64 20 77 | 69 74 68 20 61 6e 6f 74 |undled w|ith anot|
|000012a0| 68 65 72 20 70 72 6f 64 | 75 63 74 20 6f 66 66 65 |her prod|uct offe|
|000012b0| 72 65 64 20 66 6f 72 20 | 73 61 6c 65 2c 20 65 78 |red for |sale, ex|
|000012c0| 63 65 70 74 20 77 69 74 | 68 20 74 68 65 20 65 78 |cept wit|h the ex|
|000012d0| 70 72 65 73 73 20 70 65 | 72 6d 69 73 73 69 6f 6e |press pe|rmission|
|000012e0| 20 6f 66 20 74 68 65 20 | 61 75 74 68 6f 72 2e 20 | of the |author. |
|000012f0| 54 68 65 73 65 20 72 65 | 73 74 72 69 63 74 69 6f |These re|strictio|
|00001300| 6e 73 20 64 6f 20 6e 6f | 74 20 70 72 65 76 65 6e |ns do no|t preven|
|00001310| 74 20 74 68 65 20 75 73 | 65 20 6f 66 20 4d 61 63 |t the us|e of Mac|
|00001320| 50 61 74 74 65 72 6e 20 | 62 79 20 63 6f 6d 6d 65 |Pattern |by comme|
|00001330| 72 63 69 61 6c 20 75 73 | 65 72 73 2c 20 65 76 65 |rcial us|ers, eve|
|00001340| 6e 20 69 66 20 74 68 65 | 20 72 65 73 75 6c 74 73 |n if the| results|
|00001350| 20 61 72 65 20 6f 66 20 | 63 6f 6d 6d 65 72 63 69 | are of |commerci|
|00001360| 61 6c 20 76 61 6c 75 65 | 2e 00 00 11 8b a5 20 4e |al value|...... N|
|00001370| 65 77 20 49 6e 64 65 78 | c9 0d 0d 43 68 6f 6f 73 |ew Index|...Choos|
|00001380| 65 20 74 68 69 73 20 63 | 6f 6d 6d 61 6e 64 20 74 |e this c|ommand t|
|00001390| 6f 20 70 72 6f 64 75 63 | 65 20 61 20 6e 65 77 20 |o produc|e a new |
|000013a0| 64 61 74 61 62 61 73 65 | 20 69 6e 64 65 78 20 66 |database| index f|
|000013b0| 69 6c 65 2e 20 46 72 6f | 6d 20 74 68 65 20 73 75 |ile. Fro|m the su|
|000013c0| 62 6d 65 6e 75 20 73 65 | 6c 65 63 74 20 74 68 65 |bmenu se|lect the|
|000013d0| 20 74 79 70 65 20 6f 66 | 20 64 61 74 61 62 61 73 | type of| databas|
|000013e0| 65 20 79 6f 75 20 77 61 | 6e 74 20 74 6f 20 69 6e |e you wa|nt to in|
|000013f0| 64 65 78 2e 20 46 6f 72 | 20 64 65 74 61 69 6c 65 |dex. For| detaile|
|00001400| 64 20 69 6e 66 6f 72 6d | 61 74 69 6f 6e 2c 20 70 |d inform|ation, p|
|00001410| 6c 65 61 73 65 20 73 65 | 65 20 68 65 6c 70 20 74 |lease se|e help t|
|00001420| 6f 70 69 63 73 20 d4 50 | 61 74 74 65 72 6e 20 44 |opics .P|attern D|
|00001430| 61 74 61 62 61 73 65 73 | d5 20 61 6e 64 20 d4 42 |atabases|. and .B|
|00001440| 6c 6f 63 6b 20 44 61 74 | 61 62 61 73 65 73 d5 2e |lock Dat|abases..|
|00001450| 0d 0d a5 20 4f 70 65 6e | 20 44 61 74 61 62 61 73 |... Open| Databas|
|00001460| 65 20 46 69 6c 65 c9 20 | 28 6f 72 20 11 2d 4f 29 |e File. |(or .-O)|
|00001470| 0d 0d 54 68 69 73 20 63 | 6f 6d 6d 61 6e 64 20 64 |..This c|ommand d|
|00001480| 69 73 70 6c 61 79 73 20 | 61 20 64 69 72 65 63 74 |isplays |a direct|
|00001490| 6f 72 79 20 64 69 61 6c | 6f 67 20 62 6f 78 20 77 |ory dial|og box w|
|000014a0| 68 69 63 68 20 6c 65 74 | 73 20 79 6f 75 20 73 65 |hich let|s you se|
|000014b0| 6c 65 63 74 20 61 6e 20 | 65 78 69 73 74 69 6e 67 |lect an |existing|
|000014c0| 20 64 61 74 61 62 61 73 | 65 20 69 6e 64 65 78 20 | databas|e index |
|000014d0| 66 69 6c 65 20 6f 6e 20 | 74 68 65 20 64 69 73 6b |file on |the disk|
|000014e0| 2e 20 54 68 69 73 20 63 | 6f 6d 6d 61 6e 64 20 69 |. This c|ommand i|
|000014f0| 73 20 6e 6f 74 20 61 76 | 61 69 6c 61 62 6c 65 20 |s not av|ailable |
|00001500| 69 66 20 74 68 65 20 6d | 61 78 69 6d 75 6d 20 6e |if the m|aximum n|
|00001510| 75 6d 62 65 72 20 6f 66 | 20 77 69 6e 64 6f 77 73 |umber of| windows|
|00001520| 20 69 73 20 61 6c 72 65 | 61 64 79 20 6f 70 65 6e | is alre|ady open|
|00001530| 2e 0d 0d 54 65 63 68 6e | 69 63 61 6c 20 69 6e 66 |...Techn|ical inf|
|00001540| 6f 72 6d 61 74 69 6f 6e | 3a 20 4f 6e 6c 79 20 66 |ormation|: Only f|
|00001550| 69 6c 65 73 20 6f 66 20 | 74 79 70 65 20 27 4d 43 |iles of |type 'MC|
|00001560| 50 58 27 20 61 6e 64 20 | 27 4d 43 50 42 27 20 61 |PX' and |'MCPB' a|
|00001570| 72 65 20 73 68 6f 77 6e | 20 69 6e 20 74 68 65 20 |re shown| in the |
|00001580| 64 69 72 65 63 74 6f 72 | 79 20 64 69 61 6c 6f 67 |director|y dialog|
|00001590| 20 62 6f 78 20 73 6f 20 | 79 6f 75 20 63 61 6e 6e | box so |you cann|
|000015a0| 6f 74 20 6f 70 65 6e 20 | 6e 6f 72 6d 61 6c 20 74 |ot open |normal t|
|000015b0| 65 78 74 20 66 69 6c 65 | 73 20 73 75 63 68 20 61 |ext file|s such a|
|000015c0| 73 20 74 68 65 20 6f 72 | 69 67 69 6e 61 6c 20 64 |s the or|iginal d|
|000015d0| 61 74 61 62 61 73 65 20 | 74 65 78 74 20 66 69 6c |atabase |text fil|
|000015e0| 65 73 20 69 6e 61 64 76 | 65 72 74 65 6e 74 6c 79 |es inadv|ertently|
|000015f0| 2e 0d 0d 4d 61 6b 65 20 | 73 75 72 65 20 74 68 61 |...Make |sure tha|
|00001600| 74 20 69 6e 64 65 78 20 | 61 6e 64 20 64 61 74 61 |t index |and data|
|00001610| 62 61 73 65 20 66 69 6c | 65 73 20 61 72 65 20 69 |base fil|es are i|
|00001620| 6e 20 74 68 65 20 73 61 | 6d 65 20 66 6f 6c 64 65 |n the sa|me folde|
|00001630| 72 20 69 66 20 79 6f 75 | 20 77 61 6e 74 20 74 6f |r if you| want to|
|00001640| 20 68 61 76 65 20 61 63 | 63 65 73 73 20 74 6f 20 | have ac|cess to |
|00001650| 65 6e 74 72 79 20 64 6f | 63 75 6d 65 6e 74 61 74 |entry do|cumentat|
|00001660| 69 6f 6e 2e 20 53 65 65 | 20 68 65 6c 70 20 74 6f |ion. See| help to|
|00001670| 70 69 63 73 20 d4 50 61 | 74 74 65 72 6e 20 44 61 |pics .Pa|ttern Da|
|00001680| 74 61 62 61 73 65 73 d5 | 20 61 6e 64 20 d4 42 6c |tabases.| and .Bl|
|00001690| 6f 63 6b 20 44 61 74 61 | 62 61 73 65 73 d5 20 66 |ock Data|bases. f|
|000016a0| 6f 72 20 64 65 74 61 69 | 6c 73 2e 20 0d 0d 59 6f |or detai|ls. ..Yo|
|000016b0| 75 20 6d 61 79 20 68 61 | 76 65 20 6d 6f 72 65 20 |u may ha|ve more |
|000016c0| 74 68 61 6e 20 6f 6e 65 | 20 64 61 74 61 62 61 73 |than one| databas|
|000016d0| 65 20 66 69 6c 65 20 6f | 70 65 6e 20 61 74 20 74 |e file o|pen at t|
|000016e0| 68 65 20 73 61 6d 65 20 | 74 69 6d 65 20 28 65 2e |he same |time (e.|
|000016f0| 67 2e 20 50 52 4f 53 49 | 54 45 20 61 6e 64 20 42 |g. PROSI|TE and B|
|00001700| 4c 4f 43 4b 53 20 6f 72 | 20 79 6f 75 72 20 6f 77 |LOCKS or| your ow|
|00001710| 6e 20 70 72 69 76 61 74 | 65 20 64 61 74 61 62 61 |n privat|e databa|
|00001720| 73 65 73 29 2c 20 62 75 | 74 20 6e 6f 74 20 74 68 |ses), bu|t not th|
|00001730| 65 20 73 61 6d 65 20 66 | 69 6c 65 20 74 77 69 63 |e same f|ile twic|
|00001740| 65 2e 20 0d 0d 41 66 74 | 65 72 20 72 65 61 64 69 |e. ..Aft|er readi|
|00001750| 6e 67 20 74 68 65 20 69 | 6e 64 65 78 20 66 69 6c |ng the i|ndex fil|
|00001760| 65 2c 20 74 68 65 20 64 | 61 74 61 62 61 73 65 20 |e, the d|atabase |
|00001770| 65 6e 74 72 69 65 73 20 | 61 72 65 20 64 69 73 70 |entries |are disp|
|00001780| 6c 61 79 65 64 20 69 6e | 20 61 20 64 61 74 61 62 |layed in| a datab|
|00001790| 61 73 65 20 62 72 6f 77 | 73 65 72 20 77 69 6e 64 |ase brow|ser wind|
|000017a0| 6f 77 20 28 73 65 65 20 | 68 65 6c 70 20 74 6f 70 |ow (see |help top|
|000017b0| 69 63 20 d4 57 69 6e 64 | 6f 77 73 d5 29 2e 0d 0d |ic .Wind|ows.)...|
|000017c0| 00 a5 20 4c 6f 61 64 20 | 53 65 71 75 65 6e 63 65 |.. Load |Sequence|
|000017d0| 20 46 69 6c 65 c9 20 28 | 6f 72 20 11 2d 4c 29 0d | File. (|or .-L).|
|000017e0| 0d 54 68 69 73 20 6d 65 | 6e 75 20 63 6f 6d 6d 61 |.This me|nu comma|
|000017f0| 6e 64 20 61 6c 6c 6f 77 | 73 20 79 6f 75 20 74 6f |nd allow|s you to|
|00001800| 20 6f 70 65 6e 20 61 20 | 66 69 6c 65 20 74 68 61 | open a |file tha|
|00001810| 74 20 63 6f 6e 74 61 69 | 6e 73 20 73 65 71 75 65 |t contai|ns seque|
|00001820| 6e 63 65 20 64 61 74 61 | 2e 20 4d 61 63 50 61 74 |nce data|. MacPat|
|00001830| 74 65 72 6e 20 63 61 6e | 20 70 72 6f 63 65 73 73 |tern can| process|
|00001840| 20 61 20 76 61 72 69 65 | 74 79 20 6f 66 20 64 69 | a varie|ty of di|
|00001850| 66 66 65 72 65 6e 74 20 | 66 6f 72 6d 61 74 73 3b |fferent |formats;|
|00001860| 20 73 65 65 20 68 65 6c | 70 20 74 6f 70 69 63 20 | see hel|p topic |
|00001870| d4 53 65 71 75 65 6e 63 | 65 20 46 69 6c 65 20 46 |.Sequenc|e File F|
|00001880| 6f 72 6d 61 74 73 d5 20 | 66 6f 72 20 6d 6f 72 65 |ormats. |for more|
|00001890| 20 69 6e 66 6f 72 6d 61 | 74 69 6f 6e 2e 0d 20 20 | informa|tion.. |
|000018a0| 20 0d 4f 6e 6c 79 20 6f | 6e 65 20 73 65 71 75 65 | .Only o|ne seque|
|000018b0| 6e 63 65 20 66 69 6c 65 | 20 63 61 6e 20 62 65 20 |nce file| can be |
|000018c0| 6f 70 65 6e 20 61 74 20 | 61 20 74 69 6d 65 2e 20 |open at |a time. |
|000018d0| 54 68 65 20 73 65 71 75 | 65 6e 63 65 20 66 69 6c |The sequ|ence fil|
|000018e0| 65 2c 20 68 6f 77 65 76 | 65 72 2c 20 6d 61 79 20 |e, howev|er, may |
|000018f0| 63 6f 6e 74 61 69 6e 20 | 6d 6f 72 65 20 74 68 61 |contain |more tha|
|00001900| 6e 20 6f 6e 65 20 73 65 | 71 75 65 6e 63 65 2e 20 |n one se|quence. |
|00001910| 4d 61 63 50 61 74 74 65 | 72 6e 20 64 6f 65 73 20 |MacPatte|rn does |
|00001920| 6e 6f 74 20 61 6c 6c 6f | 77 20 79 6f 75 20 74 6f |not allo|w you to|
|00001930| 20 73 65 6c 65 63 74 20 | 69 6e 64 69 76 69 64 75 | select |individu|
|00001940| 61 6c 20 73 65 71 75 65 | 6e 63 65 73 20 66 72 6f |al seque|nces fro|
|00001950| 6d 20 6d 75 6c 74 69 2d | 73 65 71 75 65 6e 63 65 |m multi-|sequence|
|00001960| 20 64 61 74 61 20 66 69 | 6c 65 73 2e 20 49 6e 73 | data fi|les. Ins|
|00001970| 74 65 61 64 2c 20 4d 61 | 63 50 61 74 74 65 72 6e |tead, Ma|cPattern|
|00001980| 20 75 73 65 73 20 61 6c | 6c 20 73 65 71 75 65 6e | uses al|l sequen|
|00001990| 63 65 73 20 66 72 6f 6d | 20 61 20 73 65 71 75 65 |ces from| a seque|
|000019a0| 6e 63 65 20 66 69 6c 65 | 20 66 6f 72 20 74 68 65 |nce file| for the|
|000019b0| 20 61 6e 61 6c 79 73 69 | 73 2e 0d 20 0d 41 66 74 | analysi|s.. .Aft|
|000019c0| 65 72 20 79 6f 75 20 68 | 61 76 65 20 63 68 6f 73 |er you h|ave chos|
|000019d0| 65 6e 20 61 20 66 69 6c | 65 20 66 72 6f 6d 20 74 |en a fil|e from t|
|000019e0| 68 65 20 73 74 61 6e 64 | 61 72 64 20 64 69 72 65 |he stand|ard dire|
|000019f0| 63 74 6f 72 79 20 64 69 | 61 6c 6f 67 20 62 6f 78 |ctory di|alog box|
|00001a00| 20 4d 61 63 50 61 74 74 | 65 72 6e 20 74 72 69 65 | MacPatt|ern trie|
|00001a10| 73 20 74 6f 20 64 65 74 | 65 72 6d 69 6e 65 20 74 |s to det|ermine t|
|00001a20| 68 65 20 66 6f 72 6d 61 | 74 20 6f 66 20 74 68 65 |he forma|t of the|
|00001a30| 20 73 65 71 75 65 6e 63 | 65 73 20 62 79 20 63 68 | sequenc|es by ch|
|00001a40| 65 63 6b 69 6e 67 20 74 | 68 65 20 62 65 67 69 6e |ecking t|he begin|
|00001a50| 6e 69 6e 67 20 6f 66 20 | 74 68 65 20 66 69 72 73 |ning of |the firs|
|00001a60| 74 20 65 6e 74 72 79 2e | 20 49 74 20 74 68 65 6e |t entry.| It then|
|00001a70| 20 6f 70 65 6e 73 20 61 | 20 73 65 71 75 65 6e 63 | opens a| sequenc|
|00001a80| 65 20 77 69 6e 64 6f 77 | 20 77 68 69 63 68 20 64 |e window| which d|
|00001a90| 69 73 70 6c 61 79 73 20 | 74 68 65 20 73 65 71 75 |isplays |the sequ|
|00001aa0| 65 6e 63 65 20 66 6f 72 | 6d 61 74 2e 20 41 6c 6c |ence for|mat. All|
|00001ab0| 20 73 65 71 75 65 6e 63 | 65 73 20 69 6e 20 61 20 | sequenc|es in a |
|00001ac0| 66 69 6c 65 20 6d 75 73 | 74 20 68 61 76 65 20 74 |file mus|t have t|
|00001ad0| 68 65 20 73 61 6d 65 20 | 66 6f 72 6d 61 74 2e 0d |he same |format..|
|00001ae0| 0d a5 20 43 6c 6f 73 65 | 20 28 6f 72 20 11 2d 57 |.. Close| (or .-W|
|00001af0| 29 0d 0d 54 68 69 73 20 | 63 6f 6d 6d 61 6e 64 20 |)..This |command |
|00001b00| 63 6c 6f 73 65 73 20 74 | 68 65 20 61 63 74 69 76 |closes t|he activ|
|00001b10| 65 20 77 69 6e 64 6f 77 | 20 61 6e 64 20 69 73 20 |e window| and is |
|00001b20| 74 68 65 20 73 61 6d 65 | 20 61 73 20 63 6c 69 63 |the same| as clic|
|00001b30| 6b 69 6e 67 20 69 6e 20 | 74 68 65 20 61 63 74 69 |king in |the acti|
|00001b40| 76 65 20 77 69 6e 64 6f | 77 d5 73 20 63 6c 6f 73 |ve windo|w.s clos|
|00001b50| 65 20 62 6f 78 2e 20 49 | 66 20 74 68 65 20 63 6f |e box. I|f the co|
|00001b60| 6e 74 65 6e 74 20 6f 66 | 20 74 68 69 73 20 77 69 |ntent of| this wi|
|00001b70| 6e 64 6f 77 20 68 61 73 | 20 62 65 65 6e 20 6d 6f |ndow has| been mo|
|00001b80| 64 69 66 69 65 64 20 73 | 69 6e 63 65 20 69 74 20 |dified s|ince it |
|00001b90| 77 61 73 20 6c 61 73 74 | 20 73 61 76 65 64 2c 20 |was last| saved, |
|00001ba0| 61 20 64 69 61 6c 6f 67 | 20 62 6f 78 20 77 69 6c |a dialog| box wil|
|00001bb0| 6c 20 61 73 6b 20 79 6f | 75 20 69 66 20 79 6f 75 |l ask yo|u if you|
|00001bc0| 20 77 61 6e 74 20 74 6f | 20 73 61 76 65 20 74 68 | want to| save th|
|00001bd0| 65 20 63 68 61 6e 67 65 | 73 2c 20 64 69 73 63 61 |e change|s, disca|
|00001be0| 72 64 20 74 68 65 6d 2c | 20 6f 72 20 63 61 6e 63 |rd them,| or canc|
|00001bf0| 65 6c 20 74 68 65 20 43 | 6c 6f 73 65 20 63 6f 6d |el the C|lose com|
|00001c00| 6d 61 6e 64 2e 20 49 66 | 20 74 68 65 20 63 68 65 |mand. If| the che|
|00001c10| 63 6b 62 6f 78 20 6c 61 | 62 65 6c 6c 65 64 20 d2 |ckbox la|belled .|
|00001c20| 43 6f 6e 66 69 72 6d 20 | 63 68 61 6e 67 65 73 d3 |Confirm |changes.|
|00001c30| 20 69 6e 20 74 68 65 20 | d2 47 65 6e 65 72 61 6c | in the |.General|
|00001c40| 20 4f 70 74 69 6f 6e 73 | d3 20 64 69 61 6c 6f 67 | Options|. dialog|
|00001c50| 20 62 6f 78 20 69 73 20 | 6e 6f 74 20 63 68 65 63 | box is |not chec|
|00001c60| 6b 65 64 20 6f 72 20 69 | 66 20 79 6f 75 20 68 6f |ked or i|f you ho|
|00001c70| 6c 64 20 64 6f 77 6e 20 | 74 68 65 20 53 68 69 66 |ld down |the Shif|
|00001c80| 74 20 6b 65 79 20 77 68 | 65 6e 20 79 6f 75 20 63 |t key wh|en you c|
|00001c90| 6c 6f 73 65 20 61 20 77 | 69 6e 64 6f 77 2c 20 63 |lose a w|indow, c|
|00001ca0| 68 61 6e 67 65 73 20 61 | 72 65 20 64 69 73 63 61 |hanges a|re disca|
|00001cb0| 72 64 65 64 20 73 69 6c | 65 6e 74 6c 79 2e 0d 0d |rded sil|ently...|
|00001cc0| 4e 6f 74 65 3a 20 54 6f | 20 71 75 69 63 6b 6c 79 |Note: To| quickly|
|00001cd0| 20 63 6c 6f 73 65 20 61 | 6c 6c 20 77 69 6e 64 6f | close a|ll windo|
|00001ce0| 77 73 20 73 69 6d 75 6c | 74 61 6e 65 6f 75 73 6c |ws simul|taneousl|
|00001cf0| 79 20 68 6f 6c 64 20 64 | 6f 77 6e 20 74 68 65 20 |y hold d|own the |
|00001d00| 4f 70 74 69 6f 6e 73 20 | 6b 65 79 20 77 68 69 6c |Options |key whil|
|00001d10| 65 20 63 68 6f 6f 73 69 | 6e 67 20 43 6c 6f 73 65 |e choosi|ng Close|
|00001d20| 20 6f 72 20 63 6c 69 63 | 6b 69 6e 67 20 69 6e 74 | or clic|king int|
|00001d30| 6f 20 61 20 77 69 6e 64 | 6f 77 d5 73 20 63 6c 6f |o a wind|ow.s clo|
|00001d40| 73 65 20 62 6f 78 2e 0d | 0d a5 20 53 61 76 65 c9 |se box..|.. Save.|
|00001d50| 20 28 6f 72 20 11 2d 53 | 29 0d 0d 54 68 69 73 20 | (or .-S|)..This |
|00001d60| 63 6f 6d 6d 61 6e 64 20 | 73 61 76 65 73 20 74 68 |command |saves th|
|00001d70| 65 20 63 6f 6e 74 65 6e | 74 20 6f 66 20 74 68 65 |e conten|t of the|
|00001d80| 20 61 63 74 69 76 65 20 | 77 69 6e 64 6f 77 20 74 | active |window t|
|00001d90| 6f 20 64 69 73 6b 2e 20 | 54 68 65 20 61 63 74 69 |o disk. |The acti|
|00001da0| 6f 6e 20 74 61 6b 65 6e | 20 64 65 70 65 6e 64 73 |on taken| depends|
|00001db0| 20 6f 6e 20 74 68 65 20 | 74 79 70 65 20 6f 66 20 | on the |type of |
|00001dc0| 77 69 6e 64 6f 77 3a 0d | 0d 49 66 20 69 74 20 63 |window:.|.If it c|
|00001dd0| 6f 6e 74 61 69 6e 73 20 | 74 68 65 20 6f 75 74 70 |ontains |the outp|
|00001de0| 75 74 20 6f 66 20 61 20 | 73 65 71 75 65 6e 63 65 |ut of a |sequence|
|00001df0| 20 61 6e 61 6c 79 73 69 | 73 20 28 72 65 73 75 6c | analysi|s (resul|
|00001e00| 74 73 20 77 69 6e 64 6f | 77 29 20 6f 72 20 64 6f |ts windo|w) or do|
|00001e10| 63 75 6d 65 6e 74 61 74 | 69 6f 6e 20 61 62 6f 75 |cumentat|ion abou|
|00001e20| 74 20 61 20 64 61 74 61 | 62 61 73 65 20 65 6e 74 |t a data|base ent|
|00001e30| 72 79 20 28 64 61 74 61 | 62 61 73 65 20 65 6e 74 |ry (data|base ent|
|00001e40| 72 79 20 77 69 6e 64 6f | 77 29 2c 20 74 68 65 20 |ry windo|w), the |
|00001e50| 63 6f 6e 74 65 6e 74 20 | 77 69 6c 6c 20 62 65 20 |content |will be |
|00001e60| 73 61 76 65 64 20 61 73 | 20 61 20 74 65 78 74 20 |saved as| a text |
|00001e70| 66 69 6c 65 20 77 68 69 | 63 68 20 63 61 6e 20 62 |file whi|ch can b|
|00001e80| 65 20 6f 70 65 6e 65 64 | 20 62 79 20 61 6e 79 20 |e opened| by any |
|00001e90| 77 6f 72 64 20 70 72 6f | 63 65 73 73 6f 72 20 66 |word pro|cessor f|
|00001ea0| 6f 72 20 66 75 72 74 68 | 65 72 20 6d 61 6e 69 70 |or furth|er manip|
|00001eb0| 75 6c 61 74 69 6f 6e 2e | 20 59 6f 75 20 63 61 6e |ulation.| You can|
|00001ec0| 20 63 68 6f 6f 73 65 20 | 74 68 65 20 63 72 65 61 | choose |the crea|
|00001ed0| 74 6f 72 20 6f 66 20 74 | 68 65 20 74 65 78 74 20 |tor of t|he text |
|00001ee0| 66 69 6c 65 20 66 72 6f | 6d 20 74 68 65 20 4f 70 |file fro|m the Op|
|00001ef0| 74 69 6f 6e 73 20 6d 65 | 6e 75 2e 0d 20 0d 49 66 |tions me|nu.. .If|
|00001f00| 20 74 68 65 20 66 72 6f | 6e 74 20 77 69 6e 64 6f | the fro|nt windo|
|00001f10| 77 20 69 73 20 61 20 64 | 61 74 61 62 61 73 65 20 |w is a d|atabase |
|00001f20| 62 72 6f 77 73 65 72 20 | 77 69 6e 64 6f 77 2c 20 |browser |window, |
|00001f30| 53 61 76 65 20 77 69 6c | 6c 20 73 61 76 65 20 74 |Save wil|l save t|
|00001f40| 68 65 20 63 75 72 72 65 | 6e 74 20 73 65 74 20 73 |he curre|nt set s|
|00001f50| 74 61 74 75 73 2c 20 69 | 2e 65 2e 20 69 6e 66 6f |tatus, i|.e. info|
|00001f60| 72 6d 61 74 69 6f 6e 20 | 61 62 6f 75 74 20 74 68 |rmation |about th|
|00001f70| 65 20 65 6e 74 72 79 20 | 73 65 74 73 2c 20 74 68 |e entry |sets, th|
|00001f80| 65 20 63 75 72 72 65 6e | 74 6c 79 20 61 63 74 69 |e curren|tly acti|
|00001f90| 76 65 20 73 65 74 20 61 | 6e 64 20 77 68 69 63 68 |ve set a|nd which|
|00001fa0| 20 65 6e 74 72 69 65 73 | 20 61 72 65 20 73 65 6c | entries| are sel|
|00001fb0| 65 63 74 65 64 20 28 73 | 65 65 20 68 65 6c 70 20 |ected (s|ee help |
|00001fc0| 74 6f 70 69 63 20 d4 45 | 6e 74 72 79 20 53 65 74 |topic .E|ntry Set|
|00001fd0| 73 d5 29 2e 0d 0d 54 68 | 69 73 20 63 6f 6d 6d 61 |s.)...Th|is comma|
|00001fe0| 6e 64 20 69 73 20 6e 6f | 74 20 61 76 61 69 6c 61 |nd is no|t availa|
|00001ff0| 62 6c 65 20 69 66 20 74 | 68 65 20 66 72 6f 6e 74 |ble if t|he front|
|00002000| 20 77 69 6e 64 6f 77 20 | 69 73 20 61 20 73 65 71 | window |is a seq|
|00002010| 75 65 6e 63 65 20 77 69 | 6e 64 6f 77 20 62 65 63 |uence wi|ndow bec|
|00002020| 61 75 73 65 20 74 68 69 | 73 20 77 69 6e 64 6f 77 |ause thi|s window|
|00002030| 20 74 79 70 65 20 63 61 | 6e 6e 6f 74 20 62 65 20 | type ca|nnot be |
|00002040| 6d 6f 64 69 66 69 65 64 | 2e 0d 0d a5 20 52 65 76 |modified|.... Rev|
|00002050| 65 72 74 0d 0d 54 68 69 | 73 20 63 6f 6d 6d 61 6e |ert..Thi|s comman|
|00002060| 64 20 69 73 20 6f 6e 6c | 79 20 61 76 61 69 6c 61 |d is onl|y availa|
|00002070| 62 6c 65 20 69 66 20 74 | 68 65 20 61 63 74 69 76 |ble if t|he activ|
|00002080| 65 20 77 69 6e 64 6f 77 | 20 69 73 20 61 20 64 61 |e window| is a da|
|00002090| 74 61 62 61 73 65 20 62 | 72 6f 77 73 65 72 20 77 |tabase b|rowser w|
|000020a0| 69 6e 64 6f 77 2e 20 49 | 74 20 72 65 76 65 72 74 |indow. I|t revert|
|000020b0| 73 20 74 68 65 20 73 65 | 74 20 73 74 61 74 75 73 |s the se|t status|
|000020c0| 20 6f 66 20 74 68 65 20 | 64 61 74 61 62 61 73 65 | of the |database|
|000020d0| 20 69 6e 64 65 78 20 66 | 69 6c 65 20 74 6f 20 74 | index f|ile to t|
|000020e0| 68 65 20 6c 61 73 74 20 | 73 61 76 65 64 20 76 61 |he last |saved va|
|000020f0| 6c 75 65 73 20 28 73 65 | 65 20 68 65 6c 70 20 74 |lues (se|e help t|
|00002100| 6f 70 69 63 20 d4 45 6e | 74 72 79 20 53 65 74 73 |opic .En|try Sets|
|00002110| d5 29 20 61 6e 64 20 64 | 69 73 63 61 72 64 73 20 |.) and d|iscards |
|00002120| 61 6e 79 20 63 68 61 6e | 67 65 73 20 73 69 6e 63 |any chan|ges sinc|
|00002130| 65 20 74 68 65 6e 2e 0d | 0d a5 20 50 61 67 65 20 |e then..|.. Page |
|00002140| 53 65 74 75 70 c9 0d 0d | 50 72 65 73 65 6e 74 73 |Setup...|Presents|
|00002150| 20 74 68 65 20 73 74 61 | 6e 64 61 72 64 20 70 61 | the sta|ndard pa|
|00002160| 67 65 20 73 65 74 75 70 | 20 64 69 61 6c 6f 67 20 |ge setup| dialog |
|00002170| 77 68 69 63 68 20 6c 65 | 74 73 20 79 6f 75 20 73 |which le|ts you s|
|00002180| 65 6c 65 63 74 20 70 61 | 70 65 72 20 73 69 7a 65 |elect pa|per size|
|00002190| 2c 20 6f 72 69 65 6e 74 | 61 74 69 6f 6e 20 61 6e |, orient|ation an|
|000021a0| 64 20 73 65 76 65 72 61 | 6c 20 70 72 69 6e 74 65 |d severa|l printe|
|000021b0| 72 2d 73 70 65 63 69 66 | 69 63 20 6f 70 74 69 6f |r-specif|ic optio|
|000021c0| 6e 73 2e 20 53 65 65 20 | 79 6f 75 72 20 4d 61 63 |ns. See |your Mac|
|000021d0| 69 6e 74 6f 73 68 20 6f | 77 6e 65 72 d5 73 20 6d |intosh o|wner.s m|
|000021e0| 61 6e 75 61 6c 20 66 6f | 72 20 64 65 74 61 69 6c |anual fo|r detail|
|000021f0| 73 2e 0d 0d 00 a5 20 50 | 72 69 6e 74 c9 20 28 6f |s..... P|rint. (o|
|00002200| 72 20 11 2d 50 29 0d 0d | 54 68 69 73 20 63 6f 6d |r .-P)..|This com|
|00002210| 6d 61 6e 64 20 6c 65 74 | 73 20 79 6f 75 20 70 72 |mand let|s you pr|
|00002220| 69 6e 74 20 74 68 65 20 | 63 6f 6e 74 65 6e 74 20 |int the |content |
|00002230| 6f 66 20 74 68 65 20 61 | 63 74 69 76 65 20 77 69 |of the a|ctive wi|
|00002240| 6e 64 6f 77 2e 20 54 68 | 65 20 50 72 69 6e 74 20 |ndow. Th|e Print |
|00002250| 63 6f 6d 6d 61 6e 64 20 | 69 73 20 6e 6f 74 20 61 |command |is not a|
|00002260| 76 61 69 6c 61 62 6c 65 | 20 66 6f 72 20 73 65 71 |vailable| for seq|
|00002270| 75 65 6e 63 65 20 77 69 | 6e 64 6f 77 73 20 61 6e |uence wi|ndows an|
|00002280| 64 20 64 61 74 61 62 61 | 73 65 20 62 72 6f 77 73 |d databa|se brows|
|00002290| 65 72 20 77 69 6e 64 6f | 77 73 2e 20 45 61 63 68 |er windo|ws. Each|
|000022a0| 20 70 61 67 65 20 6f 66 | 20 74 68 65 20 70 72 69 | page of| the pri|
|000022b0| 6e 74 6f 75 74 20 68 61 | 73 20 61 20 68 65 61 64 |ntout ha|s a head|
|000022c0| 65 72 20 77 69 74 68 20 | 74 68 65 20 77 69 6e 64 |er with |the wind|
|000022d0| 6f 77 20 6e 61 6d 65 20 | 61 6e 64 20 74 68 65 20 |ow name |and the |
|000022e0| 70 61 67 65 20 6e 75 6d | 62 65 72 20 61 6e 64 20 |page num|ber and |
|000022f0| 61 20 66 6f 6f 74 65 72 | 20 73 68 6f 77 69 6e 67 |a footer| showing|
|00002300| 20 74 68 65 20 70 72 6f | 67 72 61 6d 20 6e 61 6d | the pro|gram nam|
|00002310| 65 20 61 6e 64 20 74 68 | 65 20 63 75 72 72 65 6e |e and th|e curren|
|00002320| 74 20 64 61 74 65 20 61 | 6e 64 20 74 69 6d 65 2e |t date a|nd time.|
|00002330| 20 54 6f 20 69 6e 74 65 | 72 72 75 70 74 20 70 72 | To inte|rrupt pr|
|00002340| 69 6e 74 69 6e 67 2c 20 | 70 72 65 73 73 20 11 2d |inting, |press .-|
|00002350| 50 65 72 69 6f 64 20 6f | 72 20 45 73 63 61 70 65 |Period o|r Escape|
|00002360| 2e 0d 0d a5 20 51 75 69 | 74 20 28 6f 72 20 11 2d |.... Qui|t (or .-|
|00002370| 51 29 0d 0d 54 68 69 73 | 20 63 6f 6d 6d 61 6e 64 |Q)..This| command|
|00002380| 20 74 65 72 6d 69 6e 61 | 74 65 73 20 4d 61 63 50 | termina|tes MacP|
|00002390| 61 74 74 65 72 6e 20 61 | 6e 64 20 67 65 74 73 20 |attern a|nd gets |
|000023a0| 79 6f 75 20 62 61 63 6b | 20 74 6f 20 74 68 65 20 |you back| to the |
|000023b0| 46 69 6e 64 65 72 2e 20 | 49 66 20 74 68 65 20 d2 |Finder. |If the .|
|000023c0| 43 6f 6e 66 69 72 6d 20 | 63 68 61 6e 67 65 73 d3 |Confirm |changes.|
|000023d0| 20 6f 70 74 69 6f 6e 20 | 66 72 6f 6d 20 74 68 65 | option |from the|
|000023e0| 20 d2 47 65 6e 65 72 61 | 6c 20 4f 70 74 69 6f 6e | .Genera|l Option|
|000023f0| 73 d3 20 64 69 61 6c 6f | 67 20 62 6f 78 20 69 73 |s. dialo|g box is|
|00002400| 20 6f 6e 2c 20 74 68 65 | 6e 20 66 6f 72 20 65 61 | on, the|n for ea|
|00002410| 63 68 20 77 69 6e 64 6f | 77 20 77 68 6f 73 65 20 |ch windo|w whose |
|00002420| 63 6f 6e 74 65 6e 74 20 | 68 61 73 20 63 68 61 6e |content |has chan|
|00002430| 67 65 64 20 73 69 6e 63 | 65 20 69 74 20 77 61 73 |ged sinc|e it was|
|00002440| 20 6c 61 73 74 20 73 61 | 76 65 64 2c 20 4d 61 63 | last sa|ved, Mac|
|00002450| 50 61 74 74 65 72 6e 20 | 61 73 6b 73 20 79 6f 75 |Pattern |asks you|
|00002460| 20 74 6f 20 73 61 76 65 | 20 6f 72 20 64 69 73 63 | to save| or disc|
|00002470| 61 72 64 20 63 68 61 6e | 67 65 73 20 6f 72 20 74 |ard chan|ges or t|
|00002480| 6f 20 69 6e 74 65 72 72 | 75 70 74 20 74 68 65 20 |o interr|upt the |
|00002490| 51 75 69 74 20 63 6f 6d | 6d 61 6e 64 2e 20 43 68 |Quit com|mand. Ch|
|000024a0| 61 6e 67 65 73 20 61 72 | 65 20 64 69 73 63 61 72 |anges ar|e discar|
|000024b0| 64 65 64 20 77 69 74 68 | 6f 75 74 20 70 72 6f 6d |ded with|out prom|
|000024c0| 70 74 69 6e 67 20 69 66 | 20 74 68 65 20 53 68 69 |pting if| the Shi|
|000024d0| 66 74 20 6b 65 79 20 69 | 73 20 68 65 6c 64 20 64 |ft key i|s held d|
|000024e0| 6f 77 6e 20 77 68 65 6e | 20 51 75 69 74 20 69 73 |own when| Quit is|
|000024f0| 20 63 68 6f 73 65 6e 2e | 00 00 07 6d 4e 6f 74 65 | chosen.|...mNote|
|00002500| 3a 20 43 6f 6d 6d 61 6e | 64 2d 6b 65 79 20 65 71 |: Comman|d-key eq|
|00002510| 75 69 76 61 6c 65 6e 74 | 73 20 6f 66 20 74 68 65 |uivalent|s of the|
|00002520| 20 43 75 74 2c 20 43 6f | 70 79 2c 20 50 61 73 74 | Cut, Co|py, Past|
|00002530| 65 20 61 6e 64 20 43 6c | 65 61 72 20 63 6f 6d 6d |e and Cl|ear comm|
|00002540| 61 6e 64 73 20 61 72 65 | 20 61 76 61 69 6c 61 62 |ands are| availab|
|00002550| 6c 65 20 69 6e 20 64 69 | 61 6c 6f 67 20 62 6f 78 |le in di|alog box|
|00002560| 65 73 20 61 6e 64 20 63 | 61 6e 20 62 65 20 75 73 |es and c|an be us|
|00002570| 65 64 20 74 6f 20 69 6e | 73 65 72 74 20 74 65 78 |ed to in|sert tex|
|00002580| 74 20 69 6e 74 6f 20 6f | 72 20 6d 6f 76 65 20 74 |t into o|r move t|
|00002590| 65 78 74 20 61 72 6f 75 | 6e 64 20 74 65 78 74 20 |ext arou|nd text |
|000025a0| 65 64 69 74 20 66 69 65 | 6c 64 73 20 69 6e 20 64 |edit fie|lds in d|
|000025b0| 69 61 6c 6f 67 20 62 6f | 78 65 73 2e 0d 0d a5 20 |ialog bo|xes.... |
|000025c0| 55 6e 64 6f 20 28 6f 72 | 20 11 2d 5a 29 0d 0d 54 |Undo (or| .-Z)..T|
|000025d0| 68 69 73 20 63 6f 6d 6d | 61 6e 64 20 69 73 20 6e |his comm|and is n|
|000025e0| 6f 74 20 69 6d 70 6c 65 | 6d 65 6e 74 65 64 20 69 |ot imple|mented i|
|000025f0| 6e 20 74 68 65 20 63 75 | 72 72 65 6e 74 20 76 65 |n the cu|rrent ve|
|00002600| 72 73 69 6f 6e 20 6f 66 | 20 4d 61 63 50 61 74 74 |rsion of| MacPatt|
|00002610| 65 72 6e 20 61 6e 64 20 | 74 68 65 72 65 66 6f 72 |ern and |therefor|
|00002620| 65 20 64 69 6d 6d 65 64 | 2e 0d 0d a5 20 43 75 74 |e dimmed|.... Cut|
|00002630| 20 28 6f 72 20 11 2d 58 | 29 0d 0d 54 68 69 73 20 | (or .-X|)..This |
|00002640| 63 6f 6d 6d 61 6e 64 20 | 69 73 20 6f 6e 6c 79 20 |command |is only |
|00002650| 61 76 61 69 6c 61 62 6c | 65 20 69 6e 20 64 69 61 |availabl|e in dia|
|00002660| 6c 6f 67 20 62 6f 78 65 | 73 2e 0d 0d a5 20 43 6f |log boxe|s.... Co|
|00002670| 70 79 20 28 6f 72 20 11 | 2d 43 29 0d 0d 54 68 69 |py (or .|-C)..Thi|
|00002680| 73 20 63 6f 6d 6d 61 6e | 64 20 63 6f 70 69 65 73 |s comman|d copies|
|00002690| 20 73 65 6c 65 63 74 65 | 64 20 74 65 78 74 20 66 | selecte|d text f|
|000026a0| 72 6f 6d 20 61 20 72 65 | 73 75 6c 74 73 20 6f 72 |rom a re|sults or|
|000026b0| 20 64 61 74 61 62 61 73 | 65 20 65 6e 74 72 79 20 | databas|e entry |
|000026c0| 77 69 6e 64 6f 77 20 61 | 6e 64 20 70 6c 61 63 65 |window a|nd place|
|000026d0| 73 20 69 74 20 69 6e 20 | 74 68 65 20 43 6c 69 70 |s it in |the Clip|
|000026e0| 62 6f 61 72 64 2e 20 49 | 74 20 72 65 70 6c 61 63 |board. I|t replac|
|000026f0| 65 73 20 74 68 65 20 63 | 75 72 72 65 6e 74 20 63 |es the c|urrent c|
|00002700| 6f 6e 74 65 6e 74 73 20 | 6f 66 20 74 68 65 20 43 |ontents |of the C|
|00002710| 6c 69 70 62 6f 61 72 64 | 20 28 69 66 20 74 68 65 |lipboard| (if the|
|00002720| 72 65 20 61 72 65 20 61 | 6e 79 29 2e 54 68 69 73 |re are a|ny).This|
|00002730| 20 63 6f 6d 6d 61 6e 64 | 20 63 61 6e 20 62 65 20 | command| can be |
|00002740| 75 73 65 64 20 74 6f 20 | 74 72 61 6e 73 66 65 72 |used to |transfer|
|00002750| 20 74 65 78 74 20 66 72 | 6f 6d 20 4d 61 63 50 61 | text fr|om MacPa|
|00002760| 74 74 65 72 6e 20 74 6f | 20 6f 74 68 65 72 20 70 |ttern to| other p|
|00002770| 72 6f 67 72 61 6d 73 2e | 0d 0d a5 20 50 61 73 74 |rograms.|... Past|
|00002780| 65 20 28 6f 72 20 11 2d | 56 29 0d 0d 54 68 69 73 |e (or .-|V)..This|
|00002790| 20 63 6f 6d 6d 61 6e 64 | 20 69 73 20 6f 6e 6c 79 | command| is only|
|000027a0| 20 61 76 61 69 6c 61 62 | 6c 65 20 69 6e 20 64 69 | availab|le in di|
|000027b0| 61 6c 6f 67 20 62 6f 78 | 65 73 2e 20 49 74 20 63 |alog box|es. It c|
|000027c0| 61 6e 20 62 65 20 75 73 | 65 64 20 74 6f 20 69 6e |an be us|ed to in|
|000027d0| 73 65 72 74 20 74 65 78 | 74 2c 20 65 2e 67 2e 20 |sert tex|t, e.g. |
|000027e0| 70 61 74 74 65 72 6e 20 | 64 65 73 63 72 69 70 74 |pattern |descript|
|000027f0| 69 6f 6e 73 2c 20 66 72 | 6f 6d 20 6f 74 68 65 72 |ions, fr|om other|
|00002800| 20 70 72 6f 67 72 61 6d | 73 20 69 6e 74 6f 20 4d | program|s into M|
|00002810| 61 63 50 61 74 74 65 72 | 6e d5 73 20 64 69 61 6c |acPatter|n.s dial|
|00002820| 6f 67 73 2e 0d 0d a5 20 | 43 6c 65 61 72 0d 0d 54 |ogs.... |Clear..T|
|00002830| 68 69 73 20 63 6f 6d 6d | 61 6e 64 20 69 73 20 6f |his comm|and is o|
|00002840| 6e 6c 79 20 61 76 61 69 | 6c 61 62 6c 65 20 69 6e |nly avai|lable in|
|00002850| 20 64 69 61 6c 6f 67 20 | 62 6f 78 65 73 2e 0d 0d | dialog |boxes...|
|00002860| a5 20 53 65 6c 65 63 74 | 20 41 6c 6c 20 28 6f 72 |. Select| All (or|
|00002870| 20 11 2d 41 29 0d 0d 54 | 68 69 73 20 63 6f 6d 6d | .-A)..T|his comm|
|00002880| 61 6e 64 20 73 65 6c 65 | 63 74 73 20 61 6c 6c 20 |and sele|cts all |
|00002890| 74 65 78 74 20 6f 72 20 | 61 6c 6c 20 65 6e 74 72 |text or |all entr|
|000028a0| 69 65 73 20 69 6e 20 74 | 68 65 20 63 75 72 72 65 |ies in t|he curre|
|000028b0| 6e 74 6c 79 20 61 63 74 | 69 76 65 20 77 69 6e 64 |ntly act|ive wind|
|000028c0| 6f 77 2e 0d 0d 00 a5 20 | 53 65 6c 65 63 74 20 4e |ow..... |Select N|
|000028d0| 6f 6e 65 0d 0d 54 68 69 | 73 20 63 6f 6d 6d 61 6e |one..Thi|s comman|
|000028e0| 64 20 64 65 73 65 6c 65 | 63 74 73 20 61 6c 6c 20 |d desele|cts all |
|000028f0| 74 65 78 74 20 6f 72 20 | 61 6c 6c 20 65 6e 74 72 |text or |all entr|
|00002900| 69 65 73 20 69 6e 20 74 | 68 65 20 63 75 72 72 65 |ies in t|he curre|
|00002910| 6e 74 6c 79 20 61 63 74 | 69 76 65 20 77 69 6e 64 |ntly act|ive wind|
|00002920| 6f 77 2e 0d 0d a5 20 52 | 65 6e 61 6d 65 20 53 65 |ow.... R|ename Se|
|00002930| 74 c9 0d 0d 54 68 69 73 | 20 63 6f 6d 6d 61 6e 64 |t...This| command|
|00002940| 20 61 6c 6c 6f 77 73 20 | 79 6f 75 20 74 6f 20 72 | allows |you to r|
|00002950| 65 6e 61 6d 65 20 74 68 | 65 20 63 75 72 72 65 6e |ename th|e curren|
|00002960| 74 6c 79 20 61 63 74 69 | 76 65 20 65 6e 74 72 79 |tly acti|ve entry|
|00002970| 20 73 65 74 20 6f 66 20 | 61 20 64 61 74 61 62 61 | set of |a databa|
|00002980| 73 65 20 66 69 6c 65 2e | 20 54 6f 20 6c 65 61 72 |se file.| To lear|
|00002990| 6e 20 6d 6f 72 65 20 61 | 62 6f 75 74 20 65 6e 74 |n more a|bout ent|
|000029a0| 72 79 20 73 65 74 73 2c | 20 73 65 65 20 74 68 65 |ry sets,| see the|
|000029b0| 20 68 65 6c 70 20 74 6f | 70 69 63 20 d4 45 6e 74 | help to|pic .Ent|
|000029c0| 72 79 20 53 65 74 73 d5 | 2e 0d 0d 45 6e 74 65 72 |ry Sets.|...Enter|
|000029d0| 20 74 68 65 20 6e 65 77 | 20 6e 61 6d 65 20 66 6f | the new| name fo|
|000029e0| 72 20 74 68 65 20 63 75 | 72 72 65 6e 74 20 73 65 |r the cu|rrent se|
|000029f0| 74 20 28 6d 61 78 69 6d | 75 6d 20 6f 66 20 31 35 |t (maxim|um of 15|
|00002a00| 20 63 68 61 72 61 63 74 | 65 72 73 29 20 61 6e 64 | charact|ers) and|
|00002a10| 20 63 6c 69 63 6b 20 4f | 4b 2e 20 43 6c 69 63 6b | click O|K. Click|
|00002a20| 69 6e 67 20 74 68 65 20 | 43 61 6e 63 65 6c 20 62 |ing the |Cancel b|
|00002a30| 75 74 74 6f 6e 20 6c 65 | 61 76 65 73 20 74 68 65 |utton le|aves the|
|00002a40| 20 63 75 72 72 65 6e 74 | 20 73 65 74 20 75 6e 63 | current| set unc|
|00002a50| 68 61 6e 67 65 64 2e 0d | 0d a5 20 53 65 6c 65 63 |hanged..|.. Selec|
|00002a60| 74 20 53 65 74 c9 0d 0d | 55 73 65 20 74 68 69 73 |t Set...|Use this|
|00002a70| 20 6d 65 6e 75 20 63 6f | 6d 6d 61 6e 64 20 74 6f | menu co|mmand to|
|00002a80| 20 73 65 6c 65 63 74 20 | 61 6e 79 20 6f 66 20 74 | select |any of t|
|00002a90| 68 65 20 65 69 67 68 74 | 20 61 76 61 69 6c 61 62 |he eight| availab|
|00002aa0| 6c 65 20 65 6e 74 72 79 | 20 73 65 74 73 20 28 73 |le entry| sets (s|
|00002ab0| 65 65 20 68 65 6c 70 20 | 74 6f 70 69 63 20 d4 45 |ee help |topic .E|
|00002ac0| 6e 74 72 79 20 53 65 74 | 73 d5 29 2e 0d 0d 54 6f |ntry Set|s.)...To|
|00002ad0| 20 73 65 6c 65 63 74 20 | 61 20 64 69 66 66 65 72 | select |a differ|
|00002ae0| 65 6e 74 20 6f 6e 65 2c | 20 6a 75 73 74 20 63 6c |ent one,| just cl|
|00002af0| 69 63 6b 20 6f 6e 20 74 | 68 65 20 62 6f 78 20 74 |ick on t|he box t|
|00002b00| 68 61 74 20 63 6f 6e 74 | 61 69 6e 73 20 74 68 65 |hat cont|ains the|
|00002b10| 20 6e 61 6d 65 20 6f 66 | 20 74 68 65 20 63 75 72 | name of| the cur|
|00002b20| 72 65 6e 74 20 73 65 74 | 20 61 6e 64 20 68 6f 6c |rent set| and hol|
|00002b30| 64 20 64 6f 77 6e 20 74 | 68 65 20 6d 6f 75 73 65 |d down t|he mouse|
|00002b40| 20 62 75 74 74 6f 6e 2e | 20 41 20 70 6f 70 2d 75 | button.| A pop-u|
|00002b50| 70 20 6d 65 6e 75 20 61 | 70 70 65 61 72 73 20 77 |p menu a|ppears w|
|00002b60| 68 69 63 68 20 6c 69 73 | 74 73 20 61 6c 6c 20 61 |hich lis|ts all a|
|00002b70| 76 61 69 6c 61 62 6c 65 | 20 65 6e 74 72 79 20 73 |vailable| entry s|
|00002b80| 65 74 73 0d 0d 00 53 65 | 6c 65 63 74 20 61 20 73 |ets...Se|lect a s|
|00002b90| 65 74 20 66 72 6f 6d 20 | 74 68 69 73 20 6c 69 73 |et from |this lis|
|00002ba0| 74 20 61 6e 64 20 63 6c | 69 63 6b 20 74 68 65 20 |t and cl|ick the |
|00002bb0| 4f 4b 20 62 75 74 74 6f | 6e 2c 20 6f 72 20 63 6c |OK butto|n, or cl|
|00002bc0| 69 63 6b 20 43 61 6e 63 | 65 6c 20 74 6f 20 6c 65 |ick Canc|el to le|
|00002bd0| 61 76 65 20 74 68 65 20 | 64 69 61 6c 6f 67 20 77 |ave the |dialog w|
|00002be0| 69 74 68 6f 75 74 20 63 | 68 61 6e 67 69 6e 67 20 |ithout c|hanging |
|00002bf0| 74 68 65 20 63 75 72 72 | 65 6e 74 20 73 65 74 2e |the curr|ent set.|
|00002c00| 0d 0d 41 20 71 75 69 63 | 6b 65 72 20 77 61 79 20 |..A quic|ker way |
|00002c10| 6f 66 20 63 68 61 6e 67 | 69 6e 67 20 73 65 74 73 |of chang|ing sets|
|00002c20| 20 69 73 20 74 6f 20 75 | 73 65 20 74 68 65 20 70 | is to u|se the p|
|00002c30| 6f 70 2d 75 70 20 6d 65 | 6e 75 20 69 6e 20 61 20 |op-up me|nu in a |
|00002c40| 64 61 74 61 62 61 73 65 | 20 62 72 6f 77 73 65 72 |database| browser|
|00002c50| 20 77 69 6e 64 6f 77 20 | 28 73 65 65 20 d4 57 69 | window |(see .Wi|
|00002c60| 6e 64 6f 77 73 d5 29 2e | 20 00 00 02 1e 54 68 69 |ndows.).| ....Thi|
|00002c70| 73 20 6d 65 6e 75 20 63 | 61 6e 20 62 65 20 75 73 |s menu c|an be us|
|00002c80| 65 64 20 74 6f 20 73 77 | 69 74 63 68 20 62 65 74 |ed to sw|itch bet|
|00002c90| 77 65 65 6e 20 77 69 6e | 64 6f 77 73 20 71 75 69 |ween win|dows qui|
|00002ca0| 63 6b 6c 79 2e 20 4f 70 | 65 6e 69 6e 67 20 61 20 |ckly. Op|ening a |
|00002cb0| 6e 65 77 20 77 69 6e 64 | 6f 77 20 61 64 64 73 20 |new wind|ow adds |
|00002cc0| 69 74 73 20 6e 61 6d 65 | 20 74 6f 20 74 68 65 20 |its name| to the |
|00002cd0| 62 6f 74 74 6f 6d 20 6f | 66 20 74 68 65 20 57 69 |bottom o|f the Wi|
|00002ce0| 6e 64 6f 77 73 20 6d 65 | 6e 75 2c 20 63 6c 6f 73 |ndows me|nu, clos|
|00002cf0| 69 6e 67 20 61 20 77 69 | 6e 64 6f 77 20 72 65 6d |ing a wi|ndow rem|
|00002d00| 6f 76 65 73 20 69 74 73 | 20 6e 61 6d 65 20 66 72 |oves its| name fr|
|00002d10| 6f 6d 20 74 68 65 20 6c | 69 73 74 2e 20 54 68 65 |om the l|ist. The|
|00002d20| 20 63 75 72 72 65 6e 74 | 6c 79 20 61 63 74 69 76 | current|ly activ|
|00002d30| 65 20 77 69 6e 64 6f 77 | 20 69 73 20 69 6e 64 69 |e window| is indi|
|00002d40| 63 61 74 65 64 20 62 79 | 20 61 20 63 68 65 63 6b |cated by| a check|
|00002d50| 6d 61 72 6b 20 74 6f 20 | 74 68 65 20 6c 65 66 74 |mark to |the left|
|00002d60| 20 6f 66 20 69 74 73 20 | 6e 61 6d 65 2e 20 54 68 | of its |name. Th|
|00002d70| 65 20 57 69 6e 64 6f 77 | 73 20 6d 65 6e 75 20 69 |e Window|s menu i|
|00002d80| 73 20 70 61 72 74 69 63 | 75 6c 61 72 6c 79 20 75 |s partic|ularly u|
|00002d90| 73 65 66 75 6c 20 69 66 | 20 6d 61 6e 79 20 77 69 |seful if| many wi|
|00002da0| 6e 64 6f 77 73 20 61 72 | 65 20 6f 70 65 6e 20 61 |ndows ar|e open a|
|00002db0| 6e 64 20 73 6f 6d 65 20 | 61 72 65 20 63 6f 76 65 |nd some |are cove|
|00002dc0| 72 65 64 20 63 6f 6d 70 | 6c 65 74 65 6c 79 20 62 |red comp|letely b|
|00002dd0| 79 20 6f 74 68 65 72 73 | 2e 0d 0d a5 20 52 6f 74 |y others|.... Rot|
|00002de0| 61 74 65 20 28 6f 72 20 | 11 2d 52 29 0d 0d 54 68 |ate (or |.-R)..Th|
|00002df0| 69 73 20 63 6f 6d 6d 61 | 6e 64 20 6d 6f 76 65 73 |is comma|nd moves|
|00002e00| 20 74 68 65 20 66 72 6f | 6e 74 20 77 69 6e 64 6f | the fro|nt windo|
|00002e10| 77 20 74 6f 20 74 68 65 | 20 62 61 63 6b 20 61 6e |w to the| back an|
|00002e20| 64 20 61 63 74 69 76 61 | 74 65 73 20 74 68 65 20 |d activa|tes the |
|00002e30| 6e 65 78 74 20 77 69 6e | 64 6f 77 2e 20 52 65 70 |next win|dow. Rep|
|00002e40| 65 61 74 65 64 20 75 73 | 65 20 6f 66 20 74 68 65 |eated us|e of the|
|00002e50| 20 52 6f 74 61 74 65 20 | 63 6f 6d 6d 61 6e 64 20 | Rotate |command |
|00002e60| 63 69 72 63 6c 65 73 20 | 74 68 72 6f 75 67 68 20 |circles |through |
|00002e70| 61 6c 6c 20 77 69 6e 64 | 6f 77 73 20 63 75 72 72 |all wind|ows curr|
|00002e80| 65 6e 74 6c 79 20 6f 70 | 65 6e 2e 00 00 02 07 44 |ently op|en.....D|
|00002e90| 6f 75 62 6c 65 2d 63 6c | 69 63 6b 69 6e 67 20 61 |ouble-cl|icking a|
|00002ea0| 20 64 61 74 61 62 61 73 | 65 20 65 6e 74 72 79 20 | databas|e entry |
|00002eb0| 69 6e 20 74 68 65 20 62 | 72 6f 77 73 65 72 20 77 |in the b|rowser w|
|00002ec0| 69 6e 64 6f 77 20 6f 70 | 65 6e 73 20 61 20 6e 65 |indow op|ens a ne|
|00002ed0| 77 20 77 69 6e 64 6f 77 | 20 74 68 61 74 20 64 69 |w window| that di|
|00002ee0| 73 70 6c 61 79 73 20 61 | 6c 6c 20 69 6e 66 6f 72 |splays a|ll infor|
|00002ef0| 6d 61 74 69 6f 6e 20 6f | 6e 20 74 68 69 73 20 70 |mation o|n this p|
|00002f00| 61 72 74 69 63 75 6c 61 | 72 20 70 61 74 74 65 72 |articula|r patter|
|00002f10| 6e 20 6f 72 20 62 6c 6f | 63 6b 2e 20 4d 61 63 50 |n or blo|ck. MacP|
|00002f20| 61 74 74 65 72 6e 20 77 | 69 6c 6c 20 72 65 61 64 |attern w|ill read|
|00002f30| 20 74 68 69 73 20 69 6e | 66 6f 72 6d 61 74 69 6f | this in|formatio|
|00002f40| 6e 20 66 72 6f 6d 20 74 | 68 65 20 64 61 74 61 62 |n from t|he datab|
|00002f50| 61 73 65 20 2e 64 61 74 | 20 61 6e 64 20 2e 64 6f |ase .dat| and .do|
|00002f60| 63 20 66 69 6c 65 73 2c | 20 69 66 20 61 76 61 69 |c files,| if avai|
|00002f70| 6c 61 62 6c 65 2e 0d 0d | 54 68 69 73 20 69 73 20 |lable...|This is |
|00002f80| 61 20 73 74 61 6e 64 61 | 72 64 20 4d 61 63 69 6e |a standa|rd Macin|
|00002f90| 74 6f 73 68 20 77 69 6e | 64 6f 77 2c 20 69 6e 63 |tosh win|dow, inc|
|00002fa0| 6c 75 64 69 6e 67 20 73 | 63 72 6f 6c 6c 20 62 61 |luding s|croll ba|
|00002fb0| 72 73 2c 20 63 6c 6f 73 | 65 2c 20 67 72 6f 77 20 |rs, clos|e, grow |
|00002fc0| 61 6e 64 20 7a 6f 6f 6d | 20 62 6f 78 2e 20 59 6f |and zoom| box. Yo|
|00002fd0| 75 20 63 61 6e 20 73 65 | 6c 65 63 74 20 61 6e 79 |u can se|lect any|
|00002fe0| 20 74 65 78 74 20 66 6f | 72 20 63 6f 70 79 69 6e | text fo|r copyin|
|00002ff0| 67 20 74 6f 20 74 68 65 | 20 43 6c 69 70 62 6f 61 |g to the| Clipboa|
|00003000| 72 64 2c 20 62 75 74 20 | 74 68 65 20 63 6f 6e 74 |rd, but |the cont|
|00003010| 65 6e 74 20 6f 66 20 74 | 68 65 20 77 69 6e 64 6f |ent of t|he windo|
|00003020| 77 20 63 61 6e 6e 6f 74 | 20 62 65 20 6d 6f 64 69 |w cannot| be modi|
|00003030| 66 69 65 64 2e 0d 0d 59 | 6f 75 20 6d 61 79 20 73 |fied...Y|ou may s|
|00003040| 61 76 65 20 74 68 65 20 | 64 6f 63 75 6d 65 6e 74 |ave the |document|
|00003050| 61 74 69 6f 6e 20 74 6f | 20 64 69 73 6b 20 6f 72 |ation to| disk or|
|00003060| 20 70 72 69 6e 74 20 69 | 74 2c 20 62 79 20 73 65 | print i|t, by se|
|00003070| 6c 65 63 74 69 6e 67 20 | 74 68 65 20 61 70 70 72 |lecting |the appr|
|00003080| 6f 70 72 69 61 74 65 20 | 6d 65 6e 75 20 6f 70 74 |opriate |menu opt|
|00003090| 69 6f 6e 73 2e 0d 00 00 | 02 a1 54 68 69 73 20 77 |ions....|..This w|
|000030a0| 69 6e 64 6f 77 20 69 73 | 20 6f 70 65 6e 65 64 20 |indow is| opened |
|000030b0| 61 74 20 74 68 65 20 65 | 6e 64 20 6f 66 20 61 20 |at the e|nd of a |
|000030c0| 70 61 74 74 65 72 6e 20 | 6f 72 20 62 6c 6f 63 6b |pattern |or block|
|000030d0| 20 73 65 61 72 63 68 20 | 61 6e 64 20 64 69 73 70 | search |and disp|
|000030e0| 6c 61 79 73 20 74 68 65 | 20 72 65 73 75 6c 74 73 |lays the| results|
|000030f0| 20 6f 66 20 74 68 69 73 | 20 73 65 61 72 63 68 2e | of this| search.|
|00003100| 0d 0d 4c 69 6b 65 20 74 | 68 65 20 64 61 74 61 62 |..Like t|he datab|
|00003110| 61 73 65 20 65 6e 74 72 | 79 2c 20 74 68 65 20 72 |ase entr|y, the r|
|00003120| 65 73 75 6c 74 73 20 77 | 69 6e 64 6f 77 20 69 73 |esults w|indow is|
|00003130| 20 61 20 73 74 61 6e 64 | 61 72 64 20 4d 61 63 69 | a stand|ard Maci|
|00003140| 6e 74 6f 73 68 20 77 69 | 6e 64 6f 77 2c 20 69 6e |ntosh wi|ndow, in|
|00003150| 63 6c 75 64 69 6e 67 20 | 73 63 72 6f 6c 6c 20 62 |cluding |scroll b|
|00003160| 61 72 73 2c 20 63 6c 6f | 73 65 2c 20 67 72 6f 77 |ars, clo|se, grow|
|00003170| 20 61 6e 64 20 7a 6f 6f | 6d 20 62 6f 78 2e 20 59 | and zoo|m box. Y|
|00003180| 6f 75 20 63 61 6e 20 73 | 65 6c 65 63 74 20 61 6e |ou can s|elect an|
|00003190| 79 20 74 65 78 74 20 66 | 6f 72 20 63 6f 70 79 69 |y text f|or copyi|
|000031a0| 6e 67 20 74 6f 20 74 68 | 65 20 43 6c 69 70 62 6f |ng to th|e Clipbo|
|000031b0| 61 72 64 2c 20 62 75 74 | 20 74 68 65 20 63 6f 6e |ard, but| the con|
|000031c0| 74 65 6e 74 20 6f 66 20 | 74 68 65 20 77 69 6e 64 |tent of |the wind|
|000031d0| 6f 77 20 63 61 6e 6e 6f | 74 20 62 65 20 6d 6f 64 |ow canno|t be mod|
|000031e0| 69 66 69 65 64 2e 0d 0d | 59 6f 75 20 6d 61 79 20 |ified...|You may |
|000031f0| 61 6c 73 6f 20 73 61 76 | 65 20 74 68 65 20 72 65 |also sav|e the re|
|00003200| 73 75 6c 74 73 20 74 6f | 20 64 69 73 6b 20 6f 72 |sults to| disk or|
|00003210| 20 70 72 69 6e 74 20 74 | 68 65 6d 2c 20 62 79 20 | print t|hem, by |
|00003220| 73 65 6c 65 63 74 69 6e | 67 20 74 68 65 20 61 70 |selectin|g the ap|
|00003230| 70 72 6f 70 72 69 61 74 | 65 20 6d 65 6e 75 20 6f |propriat|e menu o|
|00003240| 70 74 69 6f 6e 73 2e 0d | 0d 4e 6f 74 65 3a 20 4d |ptions..|.Note: M|
|00003250| 61 63 50 61 74 74 65 72 | 6e 20 75 73 65 73 20 74 |acPatter|n uses t|
|00003260| 68 65 20 54 65 78 74 45 | 64 69 74 20 72 6f 75 74 |he TextE|dit rout|
|00003270| 69 6e 65 73 20 6f 66 20 | 74 68 65 20 4d 61 63 69 |ines of |the Maci|
|00003280| 6e 74 6f 73 68 20 54 6f | 6f 6c 62 6f 78 20 74 6f |ntosh To|olbox to|
|00003290| 20 64 69 73 70 6c 61 79 | 20 74 68 65 20 72 65 73 | display| the res|
|000032a0| 75 6c 74 73 2e 20 54 68 | 69 73 20 72 6f 75 74 69 |ults. Th|is routi|
|000032b0| 6e 65 73 20 63 61 6e 20 | 68 61 6e 64 6c 65 20 61 |nes can |handle a|
|000032c0| 20 6d 61 78 69 6d 75 6d | 20 6f 66 20 33 32 4b 20 | maximum| of 32K |
|000032d0| 62 79 74 65 73 2e 20 54 | 68 65 72 65 66 6f 72 65 |bytes. T|herefore|
|000032e0| 2c 20 61 6e 79 20 72 65 | 73 75 6c 74 73 20 77 68 |, any re|sults wh|
|000032f0| 69 63 68 20 61 72 65 20 | 62 69 67 67 65 72 20 74 |ich are |bigger t|
|00003300| 68 61 6e 20 33 32 4b 20 | 63 61 6e 6e 6f 74 20 62 |han 32K |cannot b|
|00003310| 65 20 64 69 73 70 6c 61 | 79 65 64 20 61 6e 64 20 |e displa|yed and |
|00003320| 61 72 65 20 73 61 76 65 | 64 20 74 6f 20 64 69 73 |are save|d to dis|
|00003330| 6b 20 69 6e 73 74 65 61 | 64 2e 0d 00 00 00 c3 54 |k instea|d......T|
|00003340| 68 69 73 20 77 69 6e 64 | 6f 77 20 69 73 20 6f 70 |his wind|ow is op|
|00003350| 65 6e 65 64 20 61 66 74 | 65 72 20 73 65 6c 65 63 |ened aft|er selec|
|00003360| 74 69 6e 67 20 74 68 65 | 20 22 4c 6f 61 64 20 73 |ting the| "Load s|
|00003370| 65 71 75 65 6e 63 65 20 | 66 69 6c 65 c9 22 20 6d |equence |file." m|
|00003380| 65 6e 75 20 69 74 65 6d | 2e 0d 0d 49 74 20 63 61 |enu item|...It ca|
|00003390| 6e 20 62 65 20 6d 6f 76 | 65 64 20 62 75 74 20 6e |n be mov|ed but n|
|000033a0| 6f 74 20 73 69 7a 65 64 | 2e 20 49 74 20 73 69 6d |ot sized|. It sim|
|000033b0| 70 6c 79 20 64 69 73 70 | 6c 61 79 73 20 74 68 65 |ply disp|lays the|
|000033c0| 20 73 65 71 75 65 6e 63 | 65 20 66 69 6c 65 20 6e | sequenc|e file n|
|000033d0| 61 6d 65 20 28 61 73 20 | 74 68 65 20 77 69 6e 64 |ame (as |the wind|
|000033e0| 6f 77 20 74 69 74 6c 65 | 29 20 61 6e 64 20 74 68 |ow title|) and th|
|000033f0| 65 20 73 65 71 75 65 6e | 63 65 20 66 6f 72 6d 61 |e sequen|ce forma|
|00003400| 74 2e 00 00 08 44 54 68 | 65 20 66 6f 6c 6c 6f 77 |t....DTh|e follow|
|00003410| 69 6e 67 20 69 73 20 65 | 78 74 72 61 63 74 65 64 |ing is e|xtracted|
|00003420| 20 66 72 6f 6d 20 74 68 | 65 20 50 72 6f 73 69 74 | from th|e Prosit|
|00003430| 65 20 55 73 65 72 20 4d | 61 6e 75 61 6c 20 52 65 |e User M|anual Re|
|00003440| 6c 2e 20 35 3a 0d 0d 7b | 71 75 6f 74 65 20 73 74 |l. 5:..{|quote st|
|00003450| 61 72 74 7d 0d 2d 20 20 | 54 68 65 20 73 74 61 6e |art}.- |The stan|
|00003460| 64 61 72 64 20 49 55 50 | 41 43 20 6f 6e 65 2d 6c |dard IUP|AC one-l|
|00003470| 65 74 74 65 72 20 63 6f | 64 65 73 20 66 6f 72 20 |etter co|des for |
|00003480| 74 68 65 0d 20 20 20 20 | 61 6d 69 6e 6f 20 61 63 |the. |amino ac|
|00003490| 69 64 73 20 61 72 65 20 | 75 73 65 64 2e 0d 0d 2d |ids are |used...-|
|000034a0| 20 20 54 68 65 20 73 79 | 6d 62 6f 6c 20 27 78 27 | The sy|mbol 'x'|
|000034b0| 20 69 73 20 75 73 65 64 | 20 66 6f 72 20 61 20 70 | is used| for a p|
|000034c0| 6f 73 69 74 69 6f 6e 20 | 77 68 65 72 65 20 61 6e |osition |where an|
|000034d0| 79 0d 20 20 20 20 61 6d | 69 6e 6f 20 61 63 69 64 |y. am|ino acid|
|000034e0| 20 69 73 20 61 63 63 65 | 70 74 65 64 2e 0d 0d 2d | is acce|pted...-|
|000034f0| 20 20 41 6d 62 69 67 75 | 69 74 69 65 73 20 61 72 | Ambigu|ities ar|
|00003500| 65 20 20 69 6e 64 69 63 | 61 74 65 64 20 62 79 20 |e indic|ated by |
|00003510| 20 6c 69 73 74 69 6e 67 | 20 74 68 65 0d 20 20 20 | listing| the. |
|00003520| 20 61 63 63 65 70 74 61 | 62 6c 65 20 61 6d 69 6e | accepta|ble amin|
|00003530| 6f 20 61 63 69 64 73 20 | 66 6f 72 20 61 20 67 69 |o acids |for a gi|
|00003540| 76 65 6e 20 70 6f 73 69 | 74 69 6f 6e 2c 0d 20 20 |ven posi|tion,. |
|00003550| 20 20 62 65 74 77 65 65 | 6e 20 73 71 75 61 72 65 | betwee|n square|
|00003560| 20 20 70 61 72 65 6e 74 | 68 65 73 65 73 20 27 5b | parent|heses '[|
|00003570| 20 20 5d 27 2e 20 46 6f | 72 20 65 78 61 6d 70 6c | ]'. Fo|r exampl|
|00003580| 65 3a 0d 20 20 20 20 5b | 41 4c 54 5d 20 73 74 61 |e:. [|ALT] sta|
|00003590| 6e 64 73 20 66 6f 72 20 | 41 6c 61 20 6f 72 20 4c |nds for |Ala or L|
|000035a0| 65 75 20 6f 72 20 54 68 | 72 2e 0d 0d 2d 20 20 41 |eu or Th|r...- A|
|000035b0| 6d 62 69 67 75 69 74 69 | 65 73 20 61 72 65 20 20 |mbiguiti|es are |
|000035c0| 61 6c 73 6f 20 69 6e 64 | 69 63 61 74 65 64 20 20 |also ind|icated |
|000035d0| 62 79 20 6c 69 73 74 69 | 6e 67 0d 20 20 20 20 62 |by listi|ng. b|
|000035e0| 65 74 77 65 65 6e 20 61 | 20 20 70 61 69 72 20 20 |etween a| pair |
|000035f0| 6f 66 20 20 63 75 72 6c | 79 20 62 72 61 63 6b 65 |of curl|y bracke|
|00003600| 74 73 20 27 7b 20 20 7d | 27 20 74 68 65 0d 20 20 |ts '{ }|' the. |
|00003610| 20 20 61 6d 69 6e 6f 20 | 61 63 69 64 73 20 20 74 | amino |acids t|
|00003620| 68 61 74 20 61 72 65 20 | 20 6e 6f 74 20 20 61 63 |hat are | not ac|
|00003630| 63 65 70 74 65 64 20 20 | 61 74 20 20 61 20 0d 20 |cepted |at a . |
|00003640| 20 20 20 67 69 76 65 6e | 20 70 6f 73 69 74 69 6f | given| positio|
|00003650| 6e 2e 20 46 6f 72 20 20 | 65 78 61 6d 70 6c 65 3a |n. For |example:|
|00003660| 20 7b 41 4d 7d 20 20 73 | 74 61 6e 64 73 20 66 6f | {AM} s|tands fo|
|00003670| 72 0d 20 20 20 20 61 6e | 79 20 61 6d 69 6e 6f 20 |r. an|y amino |
|00003680| 61 63 69 64 20 65 78 63 | 65 70 74 20 41 6c 61 20 |acid exc|ept Ala |
|00003690| 61 6e 64 20 4d 65 74 2e | 0d 0d 2d 20 20 45 61 63 |and Met.|..- Eac|
|000036a0| 68 20 65 6c 65 6d 65 6e | 74 20 69 6e 20 61 20 70 |h elemen|t in a p|
|000036b0| 61 74 74 65 72 6e 20 69 | 73 20 73 65 70 61 72 61 |attern i|s separa|
|000036c0| 74 65 64 20 66 72 6f 6d | 0d 20 20 20 20 69 74 73 |ted from|. its|
|000036d0| 20 6e 65 69 67 68 62 6f | 72 20 62 79 20 61 20 27 | neighbo|r by a '|
|000036e0| 2d 27 2e 0d 0d 2d 20 20 | 52 65 70 65 74 69 74 69 |-'...- |Repetiti|
|000036f0| 6f 6e 20 6f 66 20 20 61 | 6e 20 65 6c 65 6d 65 6e |on of a|n elemen|
|00003700| 74 20 20 6f 66 20 74 68 | 65 20 70 61 74 74 65 72 |t of th|e patter|
|00003710| 6e 20 63 61 6e 0d 20 20 | 20 20 62 65 20 69 6e 64 |n can. | be ind|
|00003720| 69 63 61 74 65 64 20 62 | 79 20 66 6f 6c 6c 6f 77 |icated b|y follow|
|00003730| 69 6e 67 20 74 68 61 74 | 20 65 6c 65 6d 65 6e 74 |ing that| element|
|00003740| 20 20 77 69 74 68 20 61 | 0d 20 20 20 20 6e 75 6d | with a|. num|
|00003750| 65 72 69 63 61 6c 20 76 | 61 6c 75 65 20 20 6f 72 |erical v|alue or|
|00003760| 20 20 61 20 20 6e 75 6d | 65 72 69 63 61 6c 20 20 | a num|erical |
|00003770| 72 61 6e 67 65 0d 20 20 | 20 20 62 65 74 77 65 65 |range. | betwee|
|00003780| 6e 20 70 61 72 65 6e 74 | 68 65 73 69 73 2e 0d 20 |n parent|hesis.. |
|00003790| 20 20 20 45 78 61 6d 70 | 6c 65 73 3a 20 20 20 78 | Examp|les: x|
|000037a0| 28 33 29 20 20 63 6f 72 | 72 65 73 70 6f 6e 64 73 |(3) cor|responds|
|000037b0| 20 20 20 74 6f 20 20 78 | 2d 78 2d 78 20 20 61 6e | to x|-x-x an|
|000037c0| 64 0d 20 20 20 20 5b 46 | 59 5d 28 31 2c 32 29 20 |d. [F|Y](1,2) |
|000037d0| 63 6f 72 72 65 73 70 6f | 6e 64 73 20 74 6f 20 5b |correspo|nds to [|
|000037e0| 46 59 5d 20 6f 72 20 5b | 46 59 5d 2d 5b 46 59 5d |FY] or [|FY]-[FY]|
|000037f0| 2e 0d 0d 2d 20 20 57 68 | 65 6e 20 61 20 20 70 61 |...- Wh|en a pa|
|00003800| 74 74 65 72 6e 20 69 73 | 20 20 72 65 73 74 72 69 |ttern is| restri|
|00003810| 63 74 65 64 20 74 6f 20 | 20 65 69 74 68 65 72 20 |cted to | either |
|00003820| 74 68 65 20 20 4e 2d 0d | 20 20 20 20 6f 72 20 20 |the N-.| or |
|00003830| 43 2d 74 65 72 6d 69 6e | 61 6c 20 20 6f 66 20 20 |C-termin|al of |
|00003840| 61 20 73 65 71 75 65 6e | 63 65 2c 20 74 68 61 74 |a sequen|ce, that|
|00003850| 20 20 70 61 74 74 65 72 | 6e 0d 20 20 20 20 65 69 | patter|n. ei|
|00003860| 74 68 65 72 20 20 73 74 | 61 72 74 73 20 77 69 74 |ther st|arts wit|
|00003870| 68 20 61 20 27 3c 27 20 | 73 79 6d 62 6f 6c 20 6f |h a '<' |symbol o|
|00003880| 72 20 65 6e 64 73 20 77 | 69 74 68 20 61 0d 20 20 |r ends w|ith a. |
|00003890| 20 20 27 3e 27 20 73 79 | 6d 62 6f 6c 2e 0d 0d 2d | '>' sy|mbol...-|
|000038a0| 20 20 41 20 70 65 72 69 | 6f 64 20 65 6e 64 73 20 | A peri|od ends |
|000038b0| 74 68 65 20 70 61 74 74 | 65 72 6e 2e 0d 0d 45 78 |the patt|ern...Ex|
|000038c0| 61 6d 70 6c 65 73 3a 0d | 0d 50 41 20 20 20 5b 41 |amples:.|.PA [A|
|000038d0| 43 5d 2d 78 2d 56 2d 78 | 28 34 29 2d 7b 45 44 7d |C]-x-V-x|(4)-{ED}|
|000038e0| 2e 0d 0d 54 68 69 73 20 | 70 61 74 74 65 72 6e 20 |...This |pattern |
|000038f0| 20 63 61 6e 20 62 65 20 | 20 74 72 61 6e 73 6c 61 | can be | transla|
|00003900| 74 65 64 20 61 73 3a 0d | 5b 41 6c 61 20 6f 72 20 |ted as:.|[Ala or |
|00003910| 43 79 73 5d 2d 61 6e 79 | 2d 56 61 6c 2d 61 6e 79 |Cys]-any|-Val-any|
|00003920| 2d 61 6e 79 2d 61 6e 79 | 2d 61 6e 79 2d 0d 7b 61 |-any-any|-any-.{a|
|00003930| 6e 79 20 62 75 74 20 47 | 6c 75 20 6f 72 20 41 73 |ny but G|lu or As|
|00003940| 70 7d 0d 0d 00 50 41 20 | 20 20 3c 41 2d 78 2d 5b |p}...PA | <A-x-[|
|00003950| 53 54 5d 28 32 29 2d 78 | 28 30 2c 31 29 2d 56 2e |ST](2)-x|(0,1)-V.|
|00003960| 0d 0d 54 68 69 73 20 70 | 61 74 74 65 72 6e 2c 20 |..This p|attern, |
|00003970| 20 77 68 69 63 68 20 6d | 75 73 74 20 20 62 65 20 | which m|ust be |
|00003980| 69 6e 20 74 68 65 20 4e | 2d 74 65 72 6d 69 6e 61 |in the N|-termina|
|00003990| 6c 0d 6f 66 20 74 68 65 | 20 73 65 71 75 65 6e 63 |l.of the| sequenc|
|000039a0| 65 20 28 60 3c 27 29 2c | 20 63 61 6e 20 62 65 20 |e (`<'),| can be |
|000039b0| 74 72 61 6e 73 6c 61 74 | 65 64 20 61 73 3a 0d 41 |translat|ed as:.A|
|000039c0| 6c 61 2d 61 6e 79 2d 5b | 53 65 72 20 6f 72 20 54 |la-any-[|Ser or T|
|000039d0| 68 72 5d 2d 5b 53 65 72 | 20 6f 72 20 54 68 72 5d |hr]-[Ser| or Thr]|
|000039e0| 2d 28 61 6e 79 20 6f 72 | 20 6e 6f 6e 65 29 2d 56 |-(any or| none)-V|
|000039f0| 61 6c 0d 7b 71 75 6f 74 | 65 20 65 6e 64 7d 0d 0d |al.{quot|e end}..|
|00003a00| 54 68 65 20 69 6e 64 65 | 78 20 67 65 6e 65 72 61 |The inde|x genera|
|00003a10| 74 69 6e 67 20 73 6f 66 | 74 77 61 72 65 20 69 6e |ting sof|tware in|
|00003a20| 20 74 68 65 20 4d 61 63 | 50 61 74 74 65 72 6e 0d | the Mac|Pattern.|
|00003a30| 70 61 63 6b 61 67 65 20 | 63 68 65 63 6b 73 20 74 |package |checks t|
|00003a40| 68 65 20 69 6e 70 75 74 | 20 70 61 74 74 65 72 6e |he input| pattern|
|00003a50| 20 64 61 74 61 62 61 73 | 65 20 66 6f 72 0d 61 6e | databas|e for.an|
|00003a60| 79 20 73 79 6e 74 61 78 | 20 65 72 72 6f 72 73 2e |y syntax| errors.|
|00003a70| 0d 0d 4e 6f 74 65 3a 20 | 69 66 20 79 6f 75 20 65 |..Note: |if you e|
|00003a80| 6e 74 65 72 20 61 20 70 | 61 74 74 65 72 6e 20 62 |nter a p|attern b|
|00003a90| 79 20 6b 65 79 62 6f 61 | 72 64 2c 20 74 68 65 0d |y keyboa|rd, the.|
|00003aa0| 66 6f 6c 6c 6f 77 69 6e | 67 20 72 75 6c 65 73 20 |followin|g rules |
|00003ab0| 61 70 70 6c 79 20 69 6e | 20 61 64 64 69 74 69 6f |apply in| additio|
|00003ac0| 6e 20 74 6f 20 74 68 65 | 20 6f 6e 65 73 0d 61 62 |n to the| ones.ab|
|00003ad0| 6f 76 65 3a 0d 0d 2d 20 | 59 6f 75 20 6d 61 79 20 |ove:..- |You may |
|00003ae0| 6f 6d 69 74 20 74 68 65 | 20 74 72 61 69 6c 69 6e |omit the| trailin|
|00003af0| 67 20 70 65 72 69 6f 64 | 2e 0d 0d 2d 20 59 6f 75 |g period|...- You|
|00003b00| 20 6d 61 79 20 6f 6d 69 | 74 20 74 68 65 20 64 61 | may omi|t the da|
|00003b10| 73 68 65 73 2e 0d 0d 2d | 20 43 68 61 72 61 63 74 |shes...-| Charact|
|00003b20| 65 72 73 20 63 61 6e 20 | 62 65 20 75 70 70 65 72 |ers can |be upper|
|00003b30| 20 6f 72 20 6c 6f 77 65 | 72 20 63 61 73 65 2e 0d | or lowe|r case..|
|00003b40| 0d 2d 20 54 68 65 20 6d | 61 78 69 6d 75 6d 20 70 |.- The m|aximum p|
|00003b50| 61 74 74 65 72 6e 20 73 | 69 7a 65 20 69 73 20 35 |attern s|ize is 5|
|00003b60| 30 20 70 6f 73 69 74 69 | 6f 6e 73 2e 0d 20 20 20 |0 positi|ons.. |
|00003b70| 41 20 70 6f 73 69 74 69 | 6f 6e 20 69 73 20 64 65 |A positi|on is de|
|00003b80| 66 69 6e 65 64 20 62 79 | 20 73 75 72 72 6f 75 6e |fined by| surroun|
|00003b90| 64 69 6e 67 20 64 61 73 | 68 65 73 2c 20 0d 20 20 |ding das|hes, . |
|00003ba0| 20 6d 61 79 20 74 68 65 | 79 20 62 65 20 75 73 65 | may the|y be use|
|00003bb0| 64 20 6f 72 20 6e 6f 74 | 2e 20 54 68 65 72 65 66 |d or not|. Theref|
|00003bc0| 6f 72 65 2c 20 61 20 70 | 61 74 74 65 72 6e 0d 20 |ore, a p|attern. |
|00003bd0| 20 20 6c 69 6b 65 0d 20 | 20 20 4d 28 31 2c 33 30 | like. | M(1,30|
|00003be0| 29 2d 78 2d 4b 28 33 38 | 2c 33 39 29 20 5b 6f 72 |)-x-K(38|,39) [or|
|00003bf0| 0d 20 20 20 4d 28 31 2c | 33 30 29 58 4b 28 33 38 |. M(1,|30)XK(38|
|00003c00| 2c 33 39 29 5d 0d 20 20 | 20 69 73 20 70 65 72 66 |,39)]. | is perf|
|00003c10| 65 63 74 6c 79 20 66 69 | 6e 65 2c 20 73 69 6e 63 |ectly fi|ne, sinc|
|00003c20| 65 20 69 74 20 63 6f 6e | 73 69 73 74 73 20 6f 66 |e it con|sists of|
|00003c30| 20 6f 6e 6c 79 0d 20 20 | 20 74 68 72 65 65 20 70 | only. | three p|
|00003c40| 6f 73 69 74 69 6f 6e 73 | 2e 00 00 00 01 d7 54 68 |ositions|......Th|
|00003c50| 65 20 64 69 73 74 72 69 | 62 75 74 69 6f 6e 20 70 |e distri|bution p|
|00003c60| 61 63 6b 61 67 65 20 63 | 6f 6e 73 69 73 74 73 20 |ackage c|onsists |
|00003c70| 6f 66 20 74 68 65 20 66 | 6f 6c 6c 6f 77 69 6e 67 |of the f|ollowing|
|00003c80| 20 66 6f 75 72 20 66 69 | 6c 65 73 3a 0d 0d 4d 61 | four fi|les:..Ma|
|00003c90| 63 50 61 74 74 65 72 6e | 20 2d 20 54 68 65 20 4d |cPattern| - The M|
|00003ca0| 61 63 50 61 74 74 65 72 | 6e 20 61 70 70 6c 69 63 |acPatter|n applic|
|00003cb0| 61 74 69 6f 6e 0d 48 65 | 6c 70 20 44 61 74 61 20 |ation.He|lp Data |
|00003cc0| 20 2d 20 54 68 65 20 6f | 6e 2d 6c 69 6e 65 20 68 | - The o|n-line h|
|00003cd0| 65 6c 70 20 66 69 6c 65 | 0d 4d 61 63 50 61 74 74 |elp file|.MacPatt|
|00003ce0| 65 72 6e 20 4d 61 6e 75 | 61 6c 20 2d 20 54 68 69 |ern Manu|al - Thi|
|00003cf0| 73 20 64 6f 63 75 6d 65 | 6e 74 61 74 69 6f 6e 0d |s docume|ntation.|
|00003d00| 52 65 61 64 4d 65 20 46 | 69 72 73 74 20 2d 20 49 |ReadMe F|irst - I|
|00003d10| 6e 66 6f 72 6d 61 74 69 | 6f 6e 20 61 62 6f 75 74 |nformati|on about|
|00003d20| 20 6c 61 74 65 73 74 20 | 76 65 72 73 69 6f 6e 0d | latest |version.|
|00003d30| 0d 0d 00 41 64 64 69 74 | 69 6f 6e 61 6c 6c 79 2c |...Addit|ionally,|
|00003d40| 20 74 68 65 20 66 6f 6c | 6c 6f 77 69 6e 67 20 66 | the fol|lowing f|
|00003d50| 69 6c 65 73 20 74 79 70 | 65 73 20 77 69 6c 6c 20 |iles typ|es will |
|00003d60| 62 65 20 63 72 65 61 74 | 65 64 20 77 68 65 6e 20 |be creat|ed when |
|00003d70| 4d 61 63 50 61 74 74 65 | 72 6e 20 69 73 20 75 73 |MacPatte|rn is us|
|00003d80| 65 64 2e 20 48 6f 77 65 | 76 65 72 2c 20 74 68 65 |ed. Howe|ver, the|
|00003d90| 79 20 61 72 65 20 6e 6f | 74 20 70 61 72 74 20 69 |y are no|t part i|
|00003da0| 66 20 74 68 69 73 20 70 | 61 63 6b 61 67 65 20 61 |f this p|ackage a|
|00003db0| 6e 64 20 64 6f 6e 27 74 | 20 6e 65 65 64 20 74 6f |nd don't| need to|
|00003dc0| 20 62 65 20 70 61 73 73 | 65 64 20 6f 6e 20 62 65 | be pass|ed on be|
|00003dd0| 63 61 75 73 65 20 74 68 | 65 79 20 63 61 6e 20 62 |cause th|ey can b|
|00003de0| 65 20 65 61 73 69 6c 79 | 20 72 65 63 72 65 61 74 |e easily| recreat|
|00003df0| 65 64 3a 0d 0d 44 61 74 | 61 62 61 73 65 20 69 6e |ed:..Dat|abase in|
|00003e00| 64 65 78 20 66 69 6c 65 | 73 0d 4d 61 63 50 61 74 |dex file|s.MacPat|
|00003e10| 74 65 72 6e 20 50 72 65 | 66 65 72 65 6e 63 65 73 |tern Pre|ferences|
|00003e20| 20 66 69 6c 65 00 00 00 | bd 54 68 65 20 66 6f 6c | file...|.The fol|
|00003e30| 6c 6f 77 69 6e 67 20 6d | 65 6e 75 73 20 61 72 65 |lowing m|enus are|
|00003e40| 20 61 76 61 69 6c 61 62 | 6c 65 20 66 72 6f 6d 20 | availab|le from |
|00003e50| 4d 61 63 50 61 74 74 65 | 72 6e 3a 0d 0d 2d 20 41 |MacPatte|rn:..- A|
|00003e60| 70 70 6c 65 20 4d 65 6e | 75 0d 2d 20 46 69 6c 65 |pple Men|u.- File|
|00003e70| 20 4d 65 6e 75 0d 2d 20 | 45 64 69 74 20 4d 65 6e | Menu.- |Edit Men|
|00003e80| 75 0d 2d 20 50 72 6f 73 | 69 74 65 20 4d 65 6e 75 |u.- Pros|ite Menu|
|00003e90| 0d 2d 20 42 6c 6f 63 6b | 73 20 4d 65 6e 75 0d 2d |.- Block|s Menu.-|
|00003ea0| 20 53 74 61 74 73 20 4d | 65 6e 75 0d 2d 20 4f 70 | Stats M|enu.- Op|
|00003eb0| 74 69 6f 6e 73 20 4d 65 | 6e 75 0d 2d 20 57 69 6e |tions Me|nu.- Win|
|00003ec0| 64 6f 77 73 20 4d 65 6e | 75 0d 2d 20 48 65 6c 70 |dows Men|u.- Help|
|00003ed0| 20 4d 65 6e 75 20 28 75 | 6e 64 65 72 20 53 79 73 | Menu (u|nder Sys|
|00003ee0| 74 65 6d 20 37 29 00 00 | 00 8f 54 68 65 20 66 6f |tem 7)..|..The fo|
|00003ef0| 6c 6c 6f 77 69 6e 67 20 | 77 69 6e 64 6f 77 20 74 |llowing |window t|
|00003f00| 79 70 65 73 20 61 72 65 | 20 61 76 61 69 6c 61 62 |ypes are| availab|
|00003f10| 6c 65 20 66 72 6f 6d 20 | 4d 61 63 50 61 74 74 65 |le from |MacPatte|
|00003f20| 72 6e 3a 0d 0d 2d 20 44 | 61 74 61 62 61 73 65 20 |rn:..- D|atabase |
|00003f30| 42 72 6f 77 73 65 72 20 | 57 69 6e 64 6f 77 0d 2d |Browser |Window.-|
|00003f40| 20 44 61 74 61 62 61 73 | 65 20 45 6e 74 72 79 20 | Databas|e Entry |
|00003f50| 57 69 6e 64 6f 77 0d 2d | 20 52 65 73 75 6c 74 73 |Window.-| Results|
|00003f60| 20 57 69 6e 64 6f 77 0d | 2d 20 53 65 71 75 65 6e | Window.|- Sequen|
|00003f70| 63 65 20 57 69 6e 64 6f | 77 00 00 12 9c 4d 61 63 |ce Windo|w....Mac|
|00003f80| 50 61 74 74 65 72 6e 20 | 63 61 6e 20 62 65 20 75 |Pattern |can be u|
|00003f90| 73 65 64 20 77 69 74 68 | 20 41 2e 20 42 61 69 72 |sed with| A. Bair|
|00003fa0| 6f 63 68 d5 73 20 50 52 | 4f 53 49 54 45 20 70 61 |och.s PR|OSITE pa|
|00003fb0| 74 74 65 72 6e 20 64 61 | 74 61 62 61 73 65 2c 20 |ttern da|tabase, |
|00003fc0| 53 2e 20 48 65 6e 69 6b | 6f 66 66 d5 73 20 42 4c |S. Henik|off.s BL|
|00003fd0| 4f 43 4b 53 20 64 61 74 | 61 62 61 73 65 2c 20 6f |OCKS dat|abase, o|
|00003fe0| 72 20 77 69 74 68 20 79 | 6f 75 72 20 6f 77 6e 2c |r with y|our own,|
|00003ff0| 20 70 72 69 76 61 74 65 | 20 70 61 74 74 65 72 6e | private| pattern|
|00004000| 20 6f 72 20 62 6c 6f 63 | 6b 20 64 61 74 61 62 61 | or bloc|k databa|
|00004010| 73 65 2e 20 54 6f 20 75 | 73 65 20 4d 61 63 50 61 |se. To u|se MacPa|
|00004020| 74 74 65 72 6e 20 77 69 | 74 68 20 50 52 4f 53 49 |ttern wi|th PROSI|
|00004030| 54 45 20 61 6e 64 2f 6f | 72 20 42 4c 4f 43 4b 53 |TE and/o|r BLOCKS|
|00004040| 20 66 6f 6c 6c 6f 77 20 | 74 68 65 20 69 6e 73 74 | follow |the inst|
|00004050| 72 75 63 74 69 6f 6e 73 | 20 67 69 76 65 6e 20 69 |ructions| given i|
|00004060| 6e 20 74 68 69 73 20 63 | 68 61 70 74 65 72 2e 20 |n this c|hapter. |
|00004070| 53 65 65 20 d4 50 61 74 | 74 65 72 6e 20 44 61 74 |See .Pat|tern Dat|
|00004080| 61 62 61 73 65 73 d5 20 | 61 6e 64 20 d4 42 6c 6f |abases. |and .Blo|
|00004090| 63 6b 20 44 61 74 61 62 | 61 73 65 73 d5 20 66 6f |ck Datab|ases. fo|
|000040a0| 72 20 6d 6f 72 65 20 69 | 6e 66 6f 72 6d 61 74 69 |r more i|nformati|
|000040b0| 6f 6e 20 69 66 20 79 6f | 75 20 77 61 6e 74 20 74 |on if yo|u want t|
|000040c0| 6f 20 75 73 65 20 61 20 | 70 72 69 76 61 74 65 20 |o use a |private |
|000040d0| 64 61 74 61 62 61 73 65 | 20 69 6e 73 74 65 61 64 |database| instead|
|000040e0| 2e 0d 0d 53 74 65 70 20 | 31 3a 0d 4d 61 6b 65 20 |...Step |1:.Make |
|000040f0| 73 75 72 65 20 74 68 61 | 74 20 79 6f 75 20 68 61 |sure tha|t you ha|
|00004100| 76 65 20 67 6f 74 20 61 | 6c 6c 20 70 61 72 74 73 |ve got a|ll parts|
|00004110| 20 6f 66 20 74 68 65 20 | 4d 61 63 50 61 74 74 65 | of the |MacPatte|
|00004120| 72 6e 20 70 61 63 6b 61 | 67 65 20 28 73 65 65 20 |rn packa|ge (see |
|00004130| 41 70 70 65 6e 64 69 78 | 20 41 29 2e 0d 0d 53 74 |Appendix| A)...St|
|00004140| 65 70 20 32 3a 0d 54 6f | 20 75 73 65 20 50 52 4f |ep 2:.To| use PRO|
|00004150| 53 49 54 45 20 67 65 74 | 20 61 20 63 6f 70 79 20 |SITE get| a copy |
|00004160| 6f 66 20 74 68 65 20 50 | 52 4f 53 49 54 45 20 64 |of the P|ROSITE d|
|00004170| 61 74 61 62 61 73 65 2c | 20 65 2e 67 2e 2c 20 66 |atabase,| e.g., f|
|00004180| 72 6f 6d 20 74 68 65 20 | 45 4d 42 4c 20 46 69 6c |rom the |EMBL Fil|
|00004190| 65 20 53 65 72 76 65 72 | 20 6f 72 20 74 68 65 20 |e Server| or the |
|000041a0| 45 4d 42 4c 20 43 44 2d | 52 4f 4d 2e 20 59 6f 75 |EMBL CD-|ROM. You|
|000041b0| 20 77 69 6c 6c 20 6e 65 | 65 64 20 61 74 20 6c 65 | will ne|ed at le|
|000041c0| 61 73 74 20 74 68 65 20 | 70 72 6f 73 69 74 65 2e |ast the |prosite.|
|000041d0| 64 61 74 20 66 69 6c 65 | 2c 20 62 75 74 20 79 6f |dat file|, but yo|
|000041e0| 75 20 73 68 6f 75 6c 64 | 20 75 73 65 20 74 68 65 |u should| use the|
|000041f0| 20 70 72 6f 73 69 74 65 | 2e 64 6f 63 20 66 69 6c | prosite|.doc fil|
|00004200| 65 2c 20 74 6f 6f 2e 20 | 54 68 65 20 73 70 65 65 |e, too. |The spee|
|00004210| 64 20 6f 66 20 61 6e 61 | 6c 79 73 69 73 20 69 73 |d of ana|lysis is|
|00004220| 20 6e 6f 74 20 61 66 66 | 65 63 74 65 64 2e 20 54 | not aff|ected. T|
|00004230| 68 65 20 42 4c 4f 43 4b | 53 20 64 61 74 61 62 61 |he BLOCK|S databa|
|00004240| 73 65 20 63 61 6e 20 62 | 65 20 6f 62 74 61 69 6e |se can b|e obtain|
|00004250| 65 64 20 66 72 6f 6d 20 | 74 68 65 20 73 61 6d 65 |ed from |the same|
|00004260| 20 73 6f 75 72 63 65 73 | 2e 20 59 6f 75 20 77 69 | sources|. You wi|
|00004270| 6c 6c 20 6f 6e 6c 79 20 | 6e 65 65 64 20 74 68 65 |ll only |need the|
|00004280| 20 62 6c 6f 63 6b 73 2e | 64 61 74 20 66 69 6c 65 | blocks.|dat file|
|00004290| 2e 20 0d 0d 53 74 65 70 | 20 33 3a 0d 43 68 65 63 |. ..Step| 3:.Chec|
|000042a0| 6b 20 77 68 65 74 68 65 | 72 20 79 6f 75 72 20 63 |k whethe|r your c|
|000042b0| 6f 70 69 65 73 20 6f 66 | 20 50 52 4f 53 49 54 45 |opies of| PROSITE|
|000042c0| 20 61 6e 64 20 42 4c 4f | 43 4b 53 20 61 72 65 20 | and BLO|CKS are |
|000042d0| 61 6c 72 65 61 64 79 20 | 69 6e 20 4d 61 63 69 6e |already |in Macin|
|000042e0| 74 6f 73 68 20 66 6f 72 | 6d 61 74 2e 20 49 66 20 |tosh for|mat. If |
|000042f0| 6e 6f 74 2c 20 74 68 65 | 79 20 68 61 76 65 20 74 |not, the|y have t|
|00004300| 6f 20 62 65 20 63 6f 6e | 76 65 72 74 65 64 20 74 |o be con|verted t|
|00004310| 6f 20 4d 61 63 69 6e 74 | 6f 73 68 20 66 6f 72 6d |o Macint|osh form|
|00004320| 61 74 20 66 69 72 73 74 | 2e 20 49 66 20 79 6f 75 |at first|. If you|
|00004330| 20 72 65 63 65 69 76 65 | 64 20 74 68 65 20 64 61 | receive|d the da|
|00004340| 74 61 62 61 73 65 20 66 | 69 6c 65 73 20 62 79 20 |tabase f|iles by |
|00004350| 65 6c 65 63 74 72 6f 6e | 69 63 20 6d 61 69 6c 2c |electron|ic mail,|
|00004360| 20 66 74 70 20 6f 72 20 | 6f 74 68 65 72 20 6d 65 | ftp or |other me|
|00004370| 61 6e 73 20 6f 66 20 6e | 65 74 77 6f 72 6b 20 66 |ans of n|etwork f|
|00004380| 69 6c 65 20 74 72 61 6e | 73 66 65 72 2c 20 63 6f |ile tran|sfer, co|
|00004390| 6e 76 65 72 73 69 6f 6e | 20 77 6f 75 6c 64 20 6e |nversion| would n|
|000043a0| 6f 72 6d 61 6c 6c 79 20 | 6e 6f 74 20 62 65 20 6e |ormally |not be n|
|000043b0| 65 63 65 73 73 61 72 79 | 2e 20 49 66 20 79 6f 75 |ecessary|. If you|
|000043c0| 20 63 6f 70 69 65 64 20 | 74 68 65 20 66 69 6c 65 | copied |the file|
|000043d0| 73 20 66 72 6f 6d 20 74 | 68 65 20 45 4d 42 4c 20 |s from t|he EMBL |
|000043e0| 43 44 2d 52 4f 4d 2c 20 | 68 6f 77 65 76 65 72 2c |CD-ROM, |however,|
|000043f0| 20 63 6f 6e 76 65 72 73 | 69 6f 6e 20 69 73 20 72 | convers|ion is r|
|00004400| 65 71 75 69 72 65 64 2e | 0d 0d 4f 6e 20 74 68 65 |equired.|..On the|
|00004410| 20 4d 61 63 69 6e 74 6f | 73 68 2c 20 74 68 65 20 | Macinto|sh, the |
|00004420| 65 6e 64 20 6f 66 20 61 | 20 6c 69 6e 65 20 6f 66 |end of a| line of|
|00004430| 20 74 65 78 74 20 69 73 | 20 6d 61 72 6b 65 64 20 | text is| marked |
|00004440| 62 79 20 61 20 73 6f 2d | 63 61 6c 6c 65 64 20 63 |by a so-|called c|
|00004450| 61 72 72 69 61 67 65 20 | 72 65 74 75 72 6e 20 63 |arriage |return c|
|00004460| 68 61 72 61 63 74 65 72 | 2c 20 77 68 65 72 65 61 |haracter|, wherea|
|00004470| 73 20 4d 53 2d 44 4f 53 | 20 73 79 73 74 65 6d 73 |s MS-DOS| systems|
|00004480| 20 61 6e 64 20 74 68 65 | 20 45 4d 42 4c 20 43 44 | and the| EMBL CD|
|00004490| 2d 52 4f 4d 20 75 73 65 | 20 74 68 65 20 63 6f 6d |-ROM use| the com|
|000044a0| 62 69 6e 61 74 69 6f 6e | 20 6f 66 20 61 20 63 61 |bination| of a ca|
|000044b0| 72 72 69 61 67 65 20 72 | 65 74 75 72 6e 20 61 6e |rriage r|eturn an|
|000044c0| 64 20 61 20 6c 69 6e 65 | 66 65 65 64 20 63 68 61 |d a line|feed cha|
|000044d0| 72 61 63 74 65 72 20 74 | 6f 20 64 65 6c 69 6d 69 |racter t|o delimi|
|000044e0| 74 20 6c 69 6e 65 73 2e | 20 4f 70 65 6e 20 79 6f |t lines.| Open yo|
|000044f0| 75 72 20 64 61 74 61 62 | 61 73 65 20 66 69 6c 65 |ur datab|ase file|
|00004500| 73 20 77 69 74 68 20 61 | 20 77 6f 72 64 20 70 72 |s with a| word pr|
|00004510| 6f 63 65 73 73 6f 72 20 | 73 75 63 68 20 61 73 20 |ocessor |such as |
|00004520| 4d 53 20 57 6f 72 64 20 | 6f 72 20 4d 61 63 57 72 |MS Word |or MacWr|
|00004530| 69 74 65 2e 20 49 66 20 | 79 6f 75 20 73 65 65 20 |ite. If |you see |
|00004540| 61 20 73 6d 61 6c 6c 20 | 73 71 75 61 72 65 20 62 |a small |square b|
|00004550| 6f 78 20 28 77 68 69 63 | 68 20 69 73 20 68 6f 77 |ox (whic|h is how|
|00004560| 20 6c 69 6e 65 66 65 65 | 64 73 20 61 70 70 65 61 | linefee|ds appea|
|00004570| 72 20 6f 6e 20 74 68 65 | 20 73 63 72 65 65 6e 29 |r on the| screen)|
|00004580| 20 61 74 20 74 68 65 20 | 62 65 67 69 6e 6e 69 6e | at the |beginnin|
|00004590| 67 20 6f 66 20 65 76 65 | 72 79 20 6c 69 6e 65 20 |g of eve|ry line |
|000045a0| 65 78 63 65 70 74 20 66 | 6f 72 20 74 68 65 20 66 |except f|or the f|
|000045b0| 69 72 73 74 20 6f 6e 65 | 2c 20 74 68 65 6e 20 79 |irst one|, then y|
|000045c0| 6f 75 72 20 66 69 6c 65 | 73 20 6e 65 65 64 20 63 |our file|s need c|
|000045d0| 6f 6e 76 65 72 73 69 6f | 6e 2c 20 69 2e 65 2e 20 |onversio|n, i.e. |
|000045e0| 79 6f 75 20 68 61 76 65 | 20 74 6f 20 73 74 72 69 |you have| to stri|
|000045f0| 70 20 6f 66 66 20 74 68 | 65 20 61 64 64 69 74 69 |p off th|e additi|
|00004600| 6f 6e 61 6c 20 6c 69 6e | 65 66 65 65 64 20 63 68 |onal lin|efeed ch|
|00004610| 61 72 61 63 74 65 72 73 | 20 66 69 72 73 74 2e 20 |aracters| first. |
|00004620| 49 66 20 74 68 65 20 66 | 69 6c 65 73 20 6c 6f 6f |If the f|iles loo|
|00004630| 6b 20 6e 6f 72 6d 61 6c | 20 74 6f 20 79 6f 75 2c |k normal| to you,|
|00004640| 20 74 68 65 6e 20 79 6f | 75 20 63 61 6e 20 73 6b | then yo|u can sk|
|00004650| 69 70 20 64 69 72 65 63 | 74 6c 79 20 74 6f 20 73 |ip direc|tly to s|
|00004660| 74 65 70 20 34 20 6e 6f | 77 2e 0d 0d 00 46 69 6c |tep 4 no|w....Fil|
|00004670| 65 20 63 6f 6e 76 65 72 | 73 69 6f 6e 73 20 63 61 |e conver|sions ca|
|00004680| 6e 20 62 65 20 70 65 72 | 66 6f 72 6d 65 64 20 69 |n be per|formed i|
|00004690| 6e 20 73 65 76 65 72 61 | 6c 20 77 61 79 73 3a 0d |n severa|l ways:.|
|000046a0| 0d 2d 20 4e 75 6d 65 72 | 6f 75 73 20 70 75 62 6c |.- Numer|ous publ|
|000046b0| 69 63 20 64 6f 6d 61 69 | 6e 20 75 74 69 6c 69 74 |ic domai|n utilit|
|000046c0| 69 65 73 20 61 72 65 20 | 61 76 61 69 6c 61 62 6c |ies are |availabl|
|000046d0| 65 0d 20 20 20 66 6f 72 | 20 74 68 69 73 20 70 75 |e. for| this pu|
|000046e0| 72 70 6f 73 65 2c 20 65 | 2e 67 2e 2c 20 4d 61 63 |rpose, e|.g., Mac|
|000046f0| 53 69 6e 6b 2c 20 44 65 | 73 6b 5a 61 70 2c 20 65 |Sink, De|skZap, e|
|00004700| 74 63 2e 0d 20 20 20 53 | 65 65 20 74 68 65 20 64 |tc.. S|ee the d|
|00004710| 6f 63 75 6d 65 6e 74 61 | 74 69 6f 6e 20 61 63 63 |ocumenta|tion acc|
|00004720| 6f 6d 70 61 6e 79 69 6e | 67 20 74 68 65 73 65 0d |ompanyin|g these.|
|00004730| 20 20 20 74 6f 6f 6c 73 | 20 66 6f 72 20 64 65 74 | tools| for det|
|00004740| 61 69 6c 73 2e 0d 0d 2d | 20 59 6f 75 20 6d 61 79 |ails...-| You may|
|00004750| 20 75 73 65 20 74 68 65 | 20 41 70 70 6c 65 20 46 | use the| Apple F|
|00004760| 69 6c 65 20 45 78 63 68 | 61 6e 67 65 20 28 41 46 |ile Exch|ange (AF|
|00004770| 45 29 0d 20 20 20 70 72 | 6f 67 72 61 6d 20 70 72 |E). pr|ogram pr|
|00004780| 6f 76 69 64 65 64 20 6f | 6e 20 6f 6e 65 20 6f 66 |ovided o|n one of|
|00004790| 20 79 6f 75 72 20 73 79 | 73 74 65 6d 20 64 69 73 | your sy|stem dis|
|000047a0| 6b 73 2e 0d 20 20 20 50 | 6c 65 61 73 65 20 72 65 |ks.. P|lease re|
|000047b0| 66 65 72 20 74 6f 20 74 | 68 65 20 61 63 63 6f 6d |fer to t|he accom|
|000047c0| 70 61 6e 79 69 6e 67 20 | 64 6f 63 75 6d 65 6e 74 |panying |document|
|000047d0| 61 74 69 6f 6e 20 74 6f | 0d 20 20 20 6c 65 61 72 |ation to|. lear|
|000047e0| 6e 20 68 6f 77 20 74 6f | 20 63 6f 6e 76 65 72 74 |n how to| convert|
|000047f0| 20 4d 53 2d 44 4f 53 20 | 74 65 78 74 20 66 69 6c | MS-DOS |text fil|
|00004800| 65 73 20 74 6f 0d 20 20 | 20 4d 61 63 69 6e 74 6f |es to. | Macinto|
|00004810| 73 68 20 74 65 78 74 20 | 66 69 6c 65 73 2e 0d 0d |sh text |files...|
|00004820| 2d 20 59 6f 75 20 6d 61 | 79 20 61 6c 73 6f 20 75 |- You ma|y also u|
|00004830| 73 65 20 74 68 65 20 46 | 69 6e 64 2f 52 65 70 6c |se the F|ind/Repl|
|00004840| 61 63 65 20 66 75 6e 63 | 74 69 6f 6e 20 6f 66 0d |ace func|tion of.|
|00004850| 20 20 20 79 6f 75 72 20 | 77 6f 72 64 20 70 72 6f | your |word pro|
|00004860| 63 65 73 73 6f 72 20 69 | 66 20 69 74 20 61 6c 6c |cessor i|f it all|
|00004870| 6f 77 73 20 79 6f 75 20 | 74 6f 20 73 65 61 72 63 |ows you |to searc|
|00004880| 68 0d 20 20 20 66 6f 72 | 20 6e 6f 6e 2d 70 72 69 |h. for| non-pri|
|00004890| 6e 74 69 6e 67 20 63 68 | 61 72 61 63 74 65 72 73 |nting ch|aracters|
|000048a0| 2e 20 53 65 61 72 63 68 | 20 66 6f 72 20 61 6c 6c |. Search| for all|
|000048b0| 0d 20 20 20 6f 63 63 75 | 72 72 65 6e 63 65 73 20 |. occu|rrences |
|000048c0| 6f 66 20 74 68 65 20 6c | 69 6e 65 66 65 65 64 20 |of the l|inefeed |
|000048d0| 63 68 61 72 61 63 74 65 | 72 20 61 6e 64 20 0d 20 |characte|r and . |
|000048e0| 20 20 73 69 6d 70 6c 79 | 20 65 6e 74 65 72 20 61 | simply| enter a|
|000048f0| 6e 20 65 6d 70 74 79 20 | 72 65 70 6c 61 63 65 6d |n empty |replacem|
|00004900| 65 6e 74 20 73 74 72 69 | 6e 67 2e 0d 20 20 20 4d |ent stri|ng.. M|
|00004910| 61 6b 65 20 73 75 72 65 | 20 79 6f 75 20 73 61 76 |ake sure| you sav|
|00004920| 65 20 79 6f 75 72 20 6d | 6f 64 69 66 69 65 64 20 |e your m|odified |
|00004930| 64 6f 63 75 6d 65 6e 74 | 20 61 73 20 0d 20 20 20 |document| as . |
|00004940| 70 75 72 65 20 74 65 78 | 74 20 28 63 68 6f 6f 73 |pure tex|t (choos|
|00004950| 65 20 74 68 65 20 d2 74 | 65 78 74 20 6f 6e 6c 79 |e the .t|ext only|
|00004960| d3 20 6f 72 20 d2 41 53 | 43 49 49 0d 20 20 20 6f |. or .AS|CII. o|
|00004970| 6e 6c 79 d3 20 6f 70 74 | 69 6f 6e 20 6f 66 20 79 |nly. opt|ion of y|
|00004980| 6f 75 72 20 77 6f 72 64 | 20 70 72 6f 63 65 73 73 |our word| process|
|00004990| 6f 72 29 21 21 21 0d 0d | 53 74 65 70 20 34 3a 0d |or)!!!..|Step 4:.|
|000049a0| 4e 6f 77 20 79 6f 75 20 | 61 72 65 20 72 65 61 64 |Now you |are read|
|000049b0| 79 20 74 6f 20 63 72 65 | 61 74 65 20 74 68 65 20 |y to cre|ate the |
|000049c0| 64 61 74 61 62 61 73 65 | 20 69 6e 64 65 78 20 66 |database| index f|
|000049d0| 69 6c 65 28 73 29 2e 20 | 53 74 61 72 74 20 4d 61 |ile(s). |Start Ma|
|000049e0| 63 50 61 74 74 65 72 6e | 20 62 79 20 64 6f 75 62 |cPattern| by doub|
|000049f0| 6c 65 2d 63 6c 69 63 6b | 69 6e 67 20 69 74 73 20 |le-click|ing its |
|00004a00| 46 69 6e 64 65 72 20 69 | 63 6f 6e 20 61 6e 64 20 |Finder i|con and |
|00004a10| 73 65 6c 65 63 74 20 74 | 68 65 20 6d 65 6e 75 20 |select t|he menu |
|00004a20| 63 6f 6d 6d 61 6e 64 20 | 4e 65 77 20 49 6e 64 65 |command |New Inde|
|00004a30| 78 20 66 72 6f 6d 20 74 | 68 65 20 46 69 6c 65 20 |x from t|he File |
|00004a40| 6d 65 6e 75 2e 20 41 20 | 73 75 62 6d 65 6e 75 20 |menu. A |submenu |
|00004a50| 67 69 76 65 73 20 79 6f | 75 20 74 68 65 20 63 68 |gives yo|u the ch|
|00004a60| 6f 69 63 65 20 6f 66 20 | 63 72 65 61 74 69 6e 67 |oice of |creating|
|00004a70| 20 61 6e 20 69 6e 64 65 | 78 20 66 6f 72 20 50 52 | an inde|x for PR|
|00004a80| 4f 53 49 54 45 20 6f 72 | 20 42 4c 4f 43 4b 53 2e |OSITE or| BLOCKS.|
|00004a90| 20 41 20 73 74 61 6e 64 | 61 72 64 20 64 69 72 65 | A stand|ard dire|
|00004aa0| 63 74 6f 72 79 20 64 69 | 61 6c 6f 67 20 62 6f 78 |ctory di|alog box|
|00004ab0| 20 20 61 70 70 65 61 72 | 73 20 61 6e 64 20 79 6f | appear|s and yo|
|00004ac0| 75 20 61 72 65 20 70 72 | 6f 6d 70 74 65 64 20 66 |u are pr|ompted f|
|00004ad0| 6f 72 20 74 68 65 20 6e | 61 6d 65 20 6f 66 20 74 |or the n|ame of t|
|00004ae0| 68 65 20 64 61 74 61 62 | 61 73 65 20 66 69 6c 65 |he datab|ase file|
|00004af0| 2e 20 4c 6f 63 61 74 65 | 20 70 72 6f 73 69 74 65 |. Locate| prosite|
|00004b00| 2e 64 61 74 20 6f 72 20 | 62 6c 6f 63 6b 73 2e 64 |.dat or |blocks.d|
|00004b10| 61 74 2c 20 64 65 70 65 | 6e 64 69 6e 67 20 6f 6e |at, depe|nding on|
|00004b20| 20 77 68 69 63 68 20 69 | 6e 64 65 78 20 79 6f 75 | which i|ndex you|
|00004b30| 20 77 61 6e 74 20 74 6f | 20 63 72 65 61 74 65 2c | want to| create,|
|00004b40| 20 61 6e 64 20 6f 70 65 | 6e 20 69 74 2e 20 44 6f | and ope|n it. Do|
|00004b50| 20 6e 6f 74 20 73 65 6c | 65 63 74 20 70 72 6f 73 | not sel|ect pros|
|00004b60| 69 74 65 2e 64 6f 63 21 | 20 49 66 20 79 6f 75 20 |ite.doc!| If you |
|00004b70| 77 61 6e 74 20 74 6f 20 | 69 6e 64 65 78 20 50 52 |want to |index PR|
|00004b80| 4f 53 49 54 45 20 61 6e | 64 2c 20 66 6f 72 20 73 |OSITE an|d, for s|
|00004b90| 6f 6d 65 20 72 65 61 73 | 6f 6e 2c 20 4d 61 63 50 |ome reas|on, MacP|
|00004ba0| 61 74 74 65 72 6e 20 63 | 61 6e 6e 6f 74 20 66 69 |attern c|annot fi|
|00004bb0| 6e 64 20 70 72 6f 73 69 | 74 65 2e 64 6f 63 20 69 |nd prosi|te.doc i|
|00004bc0| 6e 20 74 68 65 20 73 61 | 6d 65 20 64 69 72 65 63 |n the sa|me direc|
|00004bd0| 74 6f 72 79 20 61 73 20 | 70 72 6f 73 69 74 65 2e |tory as |prosite.|
|00004be0| 64 61 74 2c 20 79 6f 75 | 20 77 69 6c 6c 20 62 65 |dat, you| will be|
|00004bf0| 20 6e 6f 74 69 66 69 65 | 64 20 61 6e 64 20 4d 61 | notifie|d and Ma|
|00004c00| 63 50 61 74 74 65 72 6e | 20 77 69 6c 6c 20 6f 6e |cPattern| will on|
|00004c10| 6c 79 20 75 73 65 20 74 | 68 65 20 70 72 6f 73 69 |ly use t|he prosi|
|00004c20| 74 65 2e 64 61 74 20 66 | 69 6c 65 20 66 6f 72 20 |te.dat f|ile for |
|00004c30| 62 75 69 6c 64 69 6e 67 | 20 74 68 65 20 69 6e 64 |building| the ind|
|00004c40| 65 78 2e 20 4d 61 63 50 | 61 74 74 65 72 6e 20 74 |ex. MacP|attern t|
|00004c50| 68 65 6e 20 63 72 65 61 | 74 65 73 20 61 6e 20 69 |hen crea|tes an i|
|00004c60| 6e 64 65 78 20 66 69 6c | 65 20 63 61 6c 6c 65 64 |ndex fil|e called|
|00004c70| 20 70 72 6f 73 69 74 65 | 2e 69 6e 78 20 6f 72 20 | prosite|.inx or |
|00004c80| 62 6c 6f 63 6b 73 2e 69 | 6e 78 20 69 6e 20 74 68 |blocks.i|nx in th|
|00004c90| 65 20 73 61 6d 65 20 64 | 69 72 65 63 74 6f 72 79 |e same d|irectory|
|00004ca0| 20 69 6e 20 77 68 69 63 | 68 20 74 68 65 20 64 61 | in whic|h the da|
|00004cb0| 74 61 62 61 73 65 20 66 | 69 6c 65 73 20 61 72 65 |tabase f|iles are|
|00004cc0| 20 6c 6f 63 61 74 65 64 | 2e 20 49 74 20 77 69 6c | located|. It wil|
|00004cd0| 6c 20 61 6c 73 6f 20 61 | 73 6b 20 79 6f 75 20 77 |l also a|sk you w|
|00004ce0| 68 65 74 68 65 72 20 79 | 6f 75 20 77 61 6e 74 20 |hether y|ou want |
|00004cf0| 74 6f 20 73 6f 72 74 20 | 74 68 65 20 64 61 74 61 |to sort |the data|
|00004d00| 62 61 73 65 20 65 6e 74 | 72 69 65 73 20 61 6c 70 |base ent|ries alp|
|00004d10| 68 61 62 65 74 69 63 61 | 6c 6c 79 20 62 79 20 65 |habetica|lly by e|
|00004d20| 6e 74 72 79 20 6e 61 6d | 65 20 6f 72 20 6c 65 61 |ntry nam|e or lea|
|00004d30| 76 65 20 74 68 65 6d 20 | 69 6e 20 74 68 65 69 72 |ve them |in their|
|00004d40| 20 6f 72 69 67 69 6e 61 | 6c 20 6f 72 64 65 72 2e | origina|l order.|
|00004d50| 0d 0d 41 74 74 65 6e 74 | 69 6f 6e 3a 0d 49 66 20 |..Attent|ion:.If |
|00004d60| 79 6f 75 20 63 72 65 61 | 74 65 20 61 6e 20 69 6e |you crea|te an in|
|00004d70| 64 65 78 20 66 69 6c 65 | 20 66 6f 72 20 50 52 4f |dex file| for PRO|
|00004d80| 53 49 54 45 20 4d 61 63 | 50 61 74 74 65 72 6e 20 |SITE Mac|Pattern |
|00004d90| 77 69 6c 6c 20 63 6f 6d | 70 6c 61 69 6e 20 61 62 |will com|plain ab|
|00004da0| 6f 75 74 20 74 68 65 20 | 65 6e 74 72 69 65 73 20 |out the |entries |
|00004db0| 50 53 30 30 32 36 37 20 | 28 54 41 43 48 59 4b 49 |PS00267 |(TACHYKI|
|00004dc0| 4e 49 4e 29 20 61 6e 64 | 20 50 53 30 30 35 33 39 |NIN) and| PS00539|
|00004dd0| 20 28 50 59 52 4f 4b 49 | 4e 49 4e 29 2e 0d 0d 54 | (PYROKI|NIN)...T|
|00004de0| 68 65 20 72 65 61 73 6f | 6e 20 66 6f 72 20 74 68 |he reaso|n for th|
|00004df0| 69 73 20 62 65 68 61 76 | 69 6f 75 72 20 69 73 20 |is behav|iour is |
|00004e00| 74 68 65 20 70 61 74 74 | 65 72 6e 20 64 65 66 69 |the patt|ern defi|
|00004e10| 6e 69 74 69 6f 6e 20 6f | 66 20 74 61 63 68 79 6b |nition o|f tachyk|
|00004e20| 69 6e 69 6e 73 3a 0d 20 | 20 20 20 20 20 20 20 20 |inins:. | |
|00004e30| 20 20 20 20 20 20 20 20 | 20 20 46 2d 5b 49 56 46 | | F-[IVF|
|00004e40| 59 5d 2d 47 2d 5b 4c 4d | 5d 2d 4d 2d 5b 47 3e 5d |Y]-G-[LM|]-M-[G>]|
|00004e50| 0d 09 09 09 09 09 09 09 | 09 09 20 20 20 20 20 20 |........|.. |
|00004e60| 20 20 20 20 20 20 20 20 | 20 20 20 20 20 20 20 20 | | |
|00004e70| 20 20 20 20 20 20 5e 5e | 5e 5e 0d 61 6e 64 20 70 | ^^|^^.and p|
|00004e80| 79 72 6f 6b 69 6e 69 6e | 73 3a 0d 20 20 20 20 20 |yrokinin|s:. |
|00004e90| 20 20 20 20 20 20 20 20 | 20 20 20 20 20 20 46 2d | | F-|
|00004ea0| 5b 53 54 56 5d 2d 50 2d | 52 2d 4c 2d 5b 47 3e 5d |[STV]-P-|R-L-[G>]|
|00004eb0| 0d 09 09 09 09 09 20 20 | 20 20 20 20 20 20 20 20 |...... | |
|00004ec0| 20 20 20 20 20 20 20 20 | 20 20 20 20 20 20 20 20 | | |
|00004ed0| 20 20 5e 5e 5e 5e 0d 0d | 54 68 65 20 63 61 72 62 | ^^^^..|The carb|
|00004ee0| 6f 78 79 2d 74 65 72 6d | 69 6e 75 73 20 73 79 6d |oxy-term|inus sym|
|00004ef0| 62 6f 6c 20 27 3e 27 20 | 69 73 20 74 72 65 61 74 |bol '>' |is treat|
|00004f00| 65 64 20 6c 69 6b 65 20 | 61 6e 20 61 6d 69 6e 6f |ed like |an amino|
|00004f10| 20 61 63 69 64 2c 20 61 | 6e 64 20 49 20 66 65 65 | acid, a|nd I fee|
|00004f20| 6c 20 74 68 61 74 20 74 | 68 69 73 20 69 73 20 6e |l that t|his is n|
|00004f30| 6f 74 20 63 6f 76 65 72 | 65 64 20 62 79 20 74 68 |ot cover|ed by th|
|00004f40| 65 20 64 65 66 69 6e 69 | 74 69 6f 6e 20 6f 66 20 |e defini|tion of |
|00004f50| 74 68 65 20 50 52 4f 53 | 49 54 45 20 70 61 74 74 |the PROS|ITE patt|
|00004f60| 65 72 6e 20 73 79 6e 74 | 61 78 20 61 73 20 67 69 |ern synt|ax as gi|
|00004f70| 76 65 6e 20 69 6e 20 74 | 68 65 20 50 52 4f 53 49 |ven in t|he PROSI|
|00004f80| 54 45 20 6d 61 6e 75 61 | 6c 2e 0d 0d 50 65 72 73 |TE manua|l...Pers|
|00004f90| 6f 6e 61 6c 6c 79 2c 20 | 49 20 75 73 65 20 61 20 |onally, |I use a |
|00004fa0| 74 65 78 74 20 65 64 69 | 74 6f 72 20 74 6f 20 72 |text edi|tor to r|
|00004fb0| 65 70 6c 61 63 65 20 74 | 68 65 20 50 41 20 6c 69 |eplace t|he PA li|
|00004fc0| 6e 65 73 20 69 6e 20 74 | 68 65 73 65 20 65 6e 74 |nes in t|hese ent|
|00004fd0| 72 69 65 73 20 62 79 0d | 50 41 20 20 20 46 2d 5b |ries by.|PA F-[|
|00004fe0| 49 56 46 59 5d 2d 47 2d | 5b 4c 4d 5d 2d 4d 2d 47 |IVFY]-G-|[LM]-M-G|
|00004ff0| 28 30 2c 31 29 20 61 6e | 64 0d 50 41 20 20 20 46 |(0,1) an|d.PA F|
|00005000| 2d 5b 53 54 56 5d 2d 50 | 2d 52 2d 4c 2d 47 28 30 |-[STV]-P|-R-L-G(0|
|00005010| 2c 31 29 2c 20 72 65 73 | 70 65 63 74 69 76 65 6c |,1), res|pectivel|
|00005020| 79 2e 0d 0d 4e 6f 74 65 | 2c 20 74 68 61 74 20 74 |y...Note|, that t|
|00005030| 68 69 73 20 70 61 74 74 | 65 72 6e 20 64 65 66 69 |his patt|ern defi|
|00005040| 6e 69 74 69 6f 6e 20 69 | 73 20 6e 6f 74 20 65 78 |nition i|s not ex|
|00005050| 61 63 74 6c 79 20 65 71 | 75 69 76 61 6c 65 6e 74 |actly eq|uivalent|
|00005060| 20 74 6f 20 74 68 65 20 | 6f 72 69 67 69 6e 61 6c | to the |original|
|00005070| 20 6f 6e 65 2e 20 57 69 | 74 68 20 74 68 65 20 6e | one. Wi|th the n|
|00005080| 65 77 20 50 41 20 6c 69 | 6e 65 20 79 6f 75 20 6d |ew PA li|ne you m|
|00005090| 61 79 20 64 65 74 65 63 | 74 20 61 20 70 61 74 74 |ay detec|t a patt|
|000050a0| 65 72 6e 20 6c 69 6b 65 | 20 46 49 47 4d 4d 20 69 |ern like| FIGMM i|
|000050b0| 6e 20 74 68 65 20 6d 69 | 64 64 6c 65 20 6f 66 20 |n the mi|ddle of |
|000050c0| 61 20 70 72 6f 74 65 69 | 6e 2c 20 77 68 65 72 65 |a protei|n, where|
|000050d0| 61 73 20 69 74 20 69 73 | 20 6f 6e 6c 79 20 61 6c |as it is| only al|
|000050e0| 6c 6f 77 65 64 20 61 74 | 20 74 68 65 20 63 61 72 |lowed at| the car|
|000050f0| 62 6f 78 79 2d 74 65 72 | 6d 69 6e 75 73 2e 0d 0d |boxy-ter|minus...|
|00005100| 53 74 65 70 20 35 3a 0d | 44 6f 6e 65 21 20 59 6f |Step 5:.|Done! Yo|
|00005110| 75 20 63 61 6e 20 6e 6f | 77 20 75 73 65 20 4d 61 |u can no|w use Ma|
|00005120| 63 50 61 74 74 65 72 6e | 20 77 69 74 68 20 74 68 |cPattern| with th|
|00005130| 65 20 50 52 4f 53 49 54 | 45 20 6f 72 20 42 4c 4f |e PROSIT|E or BLO|
|00005140| 43 4b 53 20 64 61 74 61 | 62 61 73 65 2e 0d 0d 0d |CKS data|base....|
|00005150| 55 73 69 6e 67 20 4d 61 | 63 50 61 74 74 65 72 6e |Using Ma|cPattern|
|00005160| 20 69 73 20 61 6c 6d 6f | 73 74 20 73 65 6c 66 2d | is almo|st self-|
|00005170| 65 78 70 6c 61 6e 61 74 | 6f 72 79 2e 20 20 46 6f |explanat|ory. Fo|
|00005180| 72 20 64 65 74 61 69 6c | 65 64 20 69 6e 66 6f 72 |r detail|ed infor|
|00005190| 6d 61 74 69 6f 6e 20 79 | 6f 75 20 6d 61 79 20 77 |mation y|ou may w|
|000051a0| 61 6e 74 20 74 6f 20 72 | 65 66 65 72 20 74 6f 20 |ant to r|efer to |
|000051b0| 74 68 69 73 20 6d 61 6e | 75 61 6c 2c 20 74 68 65 |this man|ual, the|
|000051c0| 20 6f 6e 2d 6c 69 6e 65 | 20 68 65 6c 70 20 66 75 | on-line| help fu|
|000051d0| 6e 63 74 69 6f 6e 20 6f | 72 20 42 61 6c 6c 6f 6f |nction o|r Balloo|
|000051e0| 6e 20 48 65 6c 70 20 28 | 69 66 20 79 6f 75 20 61 |n Help (|if you a|
|000051f0| 72 65 20 72 75 6e 6e 69 | 6e 67 20 53 79 73 74 65 |re runni|ng Syste|
|00005200| 6d 20 37 29 2e 41 70 70 | 6c 65 20 61 6e 64 20 48 |m 7).App|le and H|
|00005210| 65 6c 70 20 4d 65 6e 75 | 0d 00 00 0f 9b a5 20 46 |elp Menu|...... F|
|00005220| 69 6e 64 20 28 6f 72 20 | 11 2d 46 29 0d 0d 54 68 |ind (or |.-F)..Th|
|00005230| 69 73 20 6d 65 6e 75 20 | 63 6f 6d 6d 61 6e 64 20 |is menu |command |
|00005240| 69 73 20 6f 6e 6c 79 20 | 61 76 61 69 6c 61 62 6c |is only |availabl|
|00005250| 65 20 69 66 0d 20 20 20 | 2d 20 20 61 20 73 65 71 |e if. |- a seq|
|00005260| 75 65 6e 63 65 20 66 69 | 6c 65 20 69 73 20 6f 70 |uence fi|le is op|
|00005270| 65 6e 2c 0d 20 20 20 2d | 20 20 61 20 70 61 74 74 |en,. -| a patt|
|00005280| 65 72 6e 20 64 61 74 61 | 62 61 73 65 20 66 69 6c |ern data|base fil|
|00005290| 65 20 69 73 20 6f 70 65 | 6e 20 61 6e 64 20 74 68 |e is ope|n and th|
|000052a0| 65 0d 20 20 20 20 20 20 | 20 63 6f 72 72 65 73 70 |e. | corresp|
|000052b0| 6f 6e 64 69 6e 67 20 77 | 69 6e 64 6f 77 20 69 73 |onding w|indow is|
|000052c0| 20 74 68 65 20 61 63 74 | 69 76 65 20 77 69 6e 64 | the act|ive wind|
|000052d0| 6f 77 2c 0d 20 20 20 20 | 20 20 20 61 6e 64 0d 20 |ow,. | and. |
|000052e0| 20 20 2d 20 20 61 74 20 | 6c 65 61 73 74 20 6f 6e | - at |least on|
|000052f0| 65 20 70 61 74 74 65 72 | 6e 20 69 73 20 73 65 6c |e patter|n is sel|
|00005300| 65 63 74 65 64 20 66 72 | 6f 6d 20 74 68 65 20 6c |ected fr|om the l|
|00005310| 69 73 74 20 6f 66 0d 20 | 20 20 20 20 20 20 70 61 |ist of. | pa|
|00005320| 74 74 65 72 6e 73 2e 0d | 0d 57 68 65 6e 20 74 68 |tterns..|.When th|
|00005330| 69 73 20 63 6f 6d 6d 61 | 6e 64 20 69 73 20 63 68 |is comma|nd is ch|
|00005340| 6f 73 65 6e 20 4d 61 63 | 50 61 74 74 65 72 6e 20 |osen Mac|Pattern |
|00005350| 62 65 67 69 6e 73 20 74 | 6f 20 73 63 61 6e 20 74 |begins t|o scan t|
|00005360| 68 65 20 73 65 71 75 65 | 6e 63 65 20 66 69 6c 65 |he seque|nce file|
|00005370| 20 66 6f 72 20 61 6e 79 | 20 6f 63 63 75 72 72 65 | for any| occurre|
|00005380| 6e 63 65 73 20 6f 66 20 | 74 68 65 20 73 65 6c 65 |nces of |the sele|
|00005390| 63 74 65 64 20 70 61 74 | 74 65 72 6e 73 2e 20 41 |cted pat|terns. A|
|000053a0| 20 72 6f 74 61 74 69 6e | 67 20 77 61 69 74 20 63 | rotatin|g wait c|
|000053b0| 75 72 73 6f 72 20 61 6e | 64 20 61 20 73 6d 61 6c |ursor an|d a smal|
|000053c0| 6c 20 77 69 6e 64 6f 77 | 20 77 69 74 68 20 61 20 |l window| with a |
|000053d0| 70 72 6f 67 72 65 73 73 | 20 62 61 72 20 69 6e 64 |progress| bar ind|
|000053e0| 69 63 61 74 65 20 74 68 | 65 20 70 72 6f 67 72 65 |icate th|e progre|
|000053f0| 73 73 20 6f 66 20 74 68 | 65 20 73 65 61 72 63 68 |ss of th|e search|
|00005400| 2e 20 0d 0d 54 68 69 73 | 20 77 69 6e 64 6f 77 20 |. ..This| window |
|00005410| 69 73 20 61 20 6d 6f 76 | 61 62 6c 65 20 6d 6f 64 |is a mov|able mod|
|00005420| 61 6c 20 64 69 61 6c 6f | 67 2e 20 54 68 61 74 20 |al dialo|g. That |
|00005430| 69 73 2c 20 79 6f 75 20 | 63 61 6e 20 6d 6f 76 65 |is, you |can move|
|00005440| 20 69 74 20 61 72 6f 75 | 6e 64 20 74 68 65 20 73 | it arou|nd the s|
|00005450| 63 72 65 65 6e 2c 20 62 | 75 74 20 79 6f 75 20 63 |creen, b|ut you c|
|00005460| 61 6e 6e 6f 74 20 75 73 | 65 20 61 6e 79 20 6f 74 |annot us|e any ot|
|00005470| 68 65 72 20 6f 70 74 69 | 6f 6e 20 6f 66 20 4d 61 |her opti|on of Ma|
|00005480| 63 50 61 74 74 65 72 6e | 20 64 75 72 69 6e 67 20 |cPattern| during |
|00005490| 61 20 73 65 61 72 63 68 | 2e 20 4d 6f 73 74 20 69 |a search|. Most i|
|000054a0| 6d 70 6f 72 74 61 6e 74 | 6c 79 2c 20 69 74 20 61 |mportant|ly, it a|
|000054b0| 6c 6c 6f 77 73 20 79 6f | 75 20 74 6f 20 73 77 69 |llows yo|u to swi|
|000054c0| 74 63 68 20 74 6f 20 61 | 6e 6f 74 68 65 72 20 61 |tch to a|nother a|
|000054d0| 70 70 6c 69 63 61 74 69 | 6f 6e 20 62 79 20 63 6c |pplicati|on by cl|
|000054e0| 69 63 6b 69 6e 67 20 6f | 6e 20 61 20 77 69 6e 64 |icking o|n a wind|
|000054f0| 6f 77 20 77 68 69 63 68 | 20 62 65 6c 6f 6e 67 73 |ow which| belongs|
|00005500| 20 74 6f 20 74 68 61 74 | 20 61 70 70 6c 69 63 61 | to that| applica|
|00005510| 74 69 6f 6e 2c 20 62 79 | 20 63 6c 69 63 6b 69 6e |tion, by| clickin|
|00005520| 67 20 6f 6e 20 74 68 65 | 20 73 6d 61 6c 6c 20 69 |g on the| small i|
|00005530| 63 6f 6e 20 69 6e 20 74 | 68 65 20 72 69 67 68 74 |con in t|he right|
|00005540| 20 75 70 70 65 72 20 63 | 6f 72 6e 65 72 20 77 68 | upper c|orner wh|
|00005550| 65 6e 20 79 6f 75 20 61 | 72 65 20 72 75 6e 6e 69 |en you a|re runni|
|00005560| 6e 67 20 53 79 73 74 65 | 6d 20 36 20 61 6e 64 20 |ng Syste|m 6 and |
|00005570| 4d 75 6c 74 69 46 69 6e | 64 65 72 20 6f 72 20 62 |MultiFin|der or b|
|00005580| 79 20 73 65 6c 65 63 74 | 69 6e 67 20 61 6e 20 61 |y select|ing an a|
|00005590| 70 70 6c 69 63 61 74 69 | 6f 6e 20 66 72 6f 6d 20 |pplicati|on from |
|000055a0| 74 68 65 20 41 70 70 6c | 69 63 61 74 69 6f 6e 20 |the Appl|ication |
|000055b0| 6d 65 6e 75 20 69 6e 20 | 53 79 73 74 65 6d 20 37 |menu in |System 7|
|000055c0| 2e 20 49 66 20 79 6f 75 | 20 73 77 69 74 63 68 20 |. If you| switch |
|000055d0| 74 6f 20 61 6e 6f 74 68 | 65 72 20 61 70 70 6c 69 |to anoth|er appli|
|000055e0| 63 61 74 69 6f 6e 2c 20 | 4d 61 63 50 61 74 74 65 |cation, |MacPatte|
|000055f0| 72 6e 20 77 69 6c 6c 20 | 63 6f 6e 74 69 6e 75 65 |rn will |continue|
|00005600| 20 69 74 73 20 73 65 61 | 72 63 68 20 69 6e 20 74 | its sea|rch in t|
|00005610| 68 65 20 62 61 63 6b 67 | 72 6f 75 6e 64 2c 20 62 |he backg|round, b|
|00005620| 75 74 20 77 69 6c 6c 20 | 67 69 76 65 20 70 6c 65 |ut will |give ple|
|00005630| 6e 74 79 20 6f 66 20 74 | 69 6d 65 20 74 6f 20 74 |nty of t|ime to t|
|00005640| 68 65 20 20 61 63 74 69 | 76 65 20 61 70 70 6c 69 |he acti|ve appli|
|00005650| 63 61 74 69 6f 6e 2e 20 | 57 68 65 6e 20 74 68 65 |cation. |When the|
|00005660| 20 73 65 61 72 63 68 20 | 69 73 20 66 69 6e 69 73 | search |is finis|
|00005670| 68 65 64 2c 20 4d 61 63 | 50 61 74 74 65 72 6e 20 |hed, Mac|Pattern |
|00005680| 77 69 6c 6c 20 6e 6f 74 | 69 66 79 20 79 6f 75 20 |will not|ify you |
|00005690| 62 79 20 61 20 62 65 65 | 70 20 61 6e 64 20 62 79 |by a bee|p and by|
|000056a0| 20 66 6c 61 73 68 69 6e | 67 20 69 74 73 20 69 63 | flashin|g its ic|
|000056b0| 6f 6e 20 69 6e 20 74 68 | 65 20 6c 65 66 74 20 6f |on in th|e left o|
|000056c0| 72 20 72 69 67 68 74 20 | 75 70 70 65 72 20 63 6f |r right |upper co|
|000056d0| 72 6e 65 72 20 28 64 65 | 70 65 6e 64 69 6e 67 20 |rner (de|pending |
|000056e0| 6f 6e 20 79 6f 75 72 20 | 53 79 73 74 65 6d 20 76 |on your |System v|
|000056f0| 65 72 73 69 6f 6e 29 2e | 0d 0d 52 65 73 75 6c 74 |ersion).|..Result|
|00005700| 73 20 61 72 65 20 64 69 | 73 70 6c 61 79 65 64 20 |s are di|splayed |
|00005710| 69 6e 20 61 20 72 65 73 | 75 6c 74 73 20 77 69 6e |in a res|ults win|
|00005720| 64 6f 77 20 69 66 20 74 | 68 65 72 65 20 69 73 20 |dow if t|here is |
|00005730| 6c 65 73 73 20 74 68 61 | 6e 20 33 32 20 6b 69 6c |less tha|n 32 kil|
|00005740| 6f 62 79 74 65 73 20 6f | 66 20 64 61 74 61 2e 20 |obytes o|f data. |
|00005750| 4f 74 68 65 72 77 69 73 | 65 2c 20 61 20 64 69 72 |Otherwis|e, a dir|
|00005760| 65 63 74 6f 72 79 20 64 | 69 61 6c 6f 67 20 62 6f |ectory d|ialog bo|
|00005770| 78 20 77 69 6c 6c 20 70 | 6f 70 20 75 70 20 61 6e |x will p|op up an|
|00005780| 64 20 79 6f 75 20 77 69 | 6c 6c 20 62 65 20 70 72 |d you wi|ll be pr|
|00005790| 6f 6d 70 74 65 64 20 66 | 6f 72 20 61 20 66 69 6c |ompted f|or a fil|
|000057a0| 65 6e 61 6d 65 20 74 6f | 20 73 61 76 65 20 74 68 |ename to| save th|
|000057b0| 65 20 72 65 73 75 6c 74 | 73 20 74 6f 20 64 69 73 |e result|s to dis|
|000057c0| 6b 2e 20 0d 0d 41 20 73 | 65 61 72 63 68 20 63 61 |k. ..A s|earch ca|
|000057d0| 6e 20 62 65 20 69 6e 74 | 65 72 72 75 70 74 65 64 |n be int|errupted|
|000057e0| 20 61 74 20 61 6e 79 20 | 74 69 6d 65 20 62 79 20 | at any |time by |
|000057f0| 70 72 65 73 73 69 6e 67 | 20 11 2d 50 65 72 69 6f |pressing| .-Perio|
|00005800| 64 20 6f 72 20 45 73 63 | 61 70 65 2c 20 6f 72 20 |d or Esc|ape, or |
|00005810| 62 79 20 63 6c 69 63 6b | 69 6e 67 20 74 68 65 20 |by click|ing the |
|00005820| 53 74 6f 70 20 62 75 74 | 74 6f 6e 2e 0d 0d 00 a5 |Stop but|ton.....|
|00005830| 20 45 6e 74 65 72 20 50 | 61 74 74 65 72 6e c9 20 | Enter P|attern. |
|00005840| 28 6f 72 20 11 2d 45 29 | 0d 0d 43 68 6f 6f 73 65 |(or .-E)|..Choose|
|00005850| 20 74 68 69 73 20 6d 65 | 6e 75 20 63 6f 6d 6d 61 | this me|nu comma|
|00005860| 6e 64 20 74 6f 20 65 6e | 74 65 72 20 61 20 70 61 |nd to en|ter a pa|
|00005870| 74 74 65 72 6e 20 6d 61 | 6e 75 61 6c 6c 79 20 69 |ttern ma|nually i|
|00005880| 6e 73 74 65 61 64 20 6f | 66 20 73 65 6c 65 63 74 |nstead o|f select|
|00005890| 69 6e 67 20 70 61 74 74 | 65 72 6e 73 20 66 72 6f |ing patt|erns fro|
|000058a0| 6d 20 61 20 64 61 74 61 | 62 61 73 65 2e 20 54 68 |m a data|base. Th|
|000058b0| 69 73 20 63 6f 6d 6d 61 | 6e 64 20 69 73 20 6f 6e |is comma|nd is on|
|000058c0| 6c 79 20 61 76 61 69 6c | 61 62 6c 65 20 69 66 20 |ly avail|able if |
|000058d0| 61 20 73 65 71 75 65 6e | 63 65 20 66 69 6c 65 20 |a sequen|ce file |
|000058e0| 69 73 20 6f 70 65 6e 2e | 0d 0d 59 6f 75 20 6d 61 |is open.|..You ma|
|000058f0| 79 20 65 6e 74 65 72 20 | 61 6e 79 20 76 61 6c 69 |y enter |any vali|
|00005900| 64 20 70 61 74 74 65 72 | 6e 20 69 6e 20 74 68 65 |d patter|n in the|
|00005910| 20 73 74 61 6e 64 61 72 | 64 20 50 52 4f 53 49 54 | standar|d PROSIT|
|00005920| 45 20 73 79 6e 74 61 78 | 20 28 73 65 65 20 41 70 |E syntax| (see Ap|
|00005930| 70 65 6e 64 69 78 20 42 | 29 2e 20 4d 61 63 50 61 |pendix B|). MacPa|
|00005940| 74 74 65 72 6e 20 63 68 | 65 63 6b 73 20 74 68 65 |ttern ch|ecks the|
|00005950| 20 63 6f 72 72 65 63 74 | 6e 65 73 73 20 6f 66 20 | correct|ness of |
|00005960| 74 68 65 20 70 61 74 74 | 65 72 6e 20 77 68 65 6e |the patt|ern when|
|00005970| 20 74 68 65 20 46 69 6e | 64 20 62 75 74 74 6f 6e | the Fin|d button|
|00005980| 20 69 73 20 63 6c 69 63 | 6b 65 64 20 61 6e 64 20 | is clic|ked and |
|00005990| 77 69 6c 6c 20 6e 6f 74 | 69 66 79 20 79 6f 75 20 |will not|ify you |
|000059a0| 69 66 20 69 74 20 64 65 | 74 65 63 74 73 20 73 79 |if it de|tects sy|
|000059b0| 6e 74 61 78 20 65 72 72 | 6f 72 73 2e 0d 0d 54 68 |ntax err|ors...Th|
|000059c0| 65 20 46 69 6e 64 20 62 | 75 74 74 6f 6e 20 73 74 |e Find b|utton st|
|000059d0| 61 72 74 73 20 74 68 65 | 20 73 65 61 72 63 68 20 |arts the| search |
|000059e0| 75 73 69 6e 67 20 74 68 | 65 20 63 75 72 72 65 6e |using th|e curren|
|000059f0| 74 6c 79 20 6f 70 65 6e | 20 73 65 71 75 65 6e 63 |tly open| sequenc|
|00005a00| 65 20 66 69 6c 65 2c 20 | 77 68 69 6c 65 20 43 61 |e file, |while Ca|
|00005a10| 6e 63 65 6c 20 77 69 6c | 6c 20 64 69 73 6d 69 73 |ncel wil|l dismis|
|00005a20| 73 20 74 68 69 73 20 64 | 69 61 6c 6f 67 20 77 69 |s this d|ialog wi|
|00005a30| 74 68 6f 75 74 20 69 6e | 69 74 69 61 74 69 6e 67 |thout in|itiating|
|00005a40| 20 61 20 73 65 61 72 63 | 68 2e 0d 0d 48 69 6e 74 | a searc|h...Hint|
|00005a50| 3a 20 49 66 20 79 6f 75 | 20 77 61 6e 74 20 74 6f |: If you| want to|
|00005a60| 20 73 65 61 72 63 68 20 | 61 20 63 6f 6d 70 6c 65 | search |a comple|
|00005a70| 74 65 20 70 72 6f 74 65 | 69 6e 20 64 61 74 61 62 |te prote|in datab|
|00005a80| 61 73 65 20 66 6f 72 20 | 6f 6e 65 20 67 69 76 65 |ase for |one give|
|00005a90| 6e 20 50 52 4f 53 49 54 | 45 20 70 61 74 74 65 72 |n PROSIT|E patter|
|00005aa0| 6e 2c 20 79 6f 75 20 73 | 68 6f 75 6c 64 20 70 72 |n, you s|hould pr|
|00005ab0| 6f 63 65 65 64 20 61 73 | 20 66 6f 6c 6c 6f 77 73 |oceed as| follows|
|00005ac0| 3a 0d 0d 2d 20 44 6f 75 | 62 6c 65 2d 63 6c 69 63 |:..- Dou|ble-clic|
|00005ad0| 6b 20 6f 6e 20 74 68 65 | 20 70 61 74 74 65 72 6e |k on the| pattern|
|00005ae0| 20 6e 61 6d 65 20 69 6e | 20 74 68 65 20 70 61 74 | name in| the pat|
|00005af0| 74 65 72 6e 0d 20 20 20 | 6c 69 73 74 20 74 6f 20 |tern. |list to |
|00005b00| 61 63 63 65 73 73 20 74 | 68 65 20 64 6f 63 75 6d |access t|he docum|
|00005b10| 65 6e 74 61 74 69 6f 6e | 2e 0d 2d 20 53 65 6c 65 |entation|..- Sele|
|00005b20| 63 74 20 74 68 65 20 70 | 61 74 74 65 72 6e 20 69 |ct the p|attern i|
|00005b30| 6e 20 74 68 65 20 50 41 | 20 6c 69 6e 65 20 6f 66 |n the PA| line of|
|00005b40| 20 74 68 69 73 20 65 6e | 74 72 79 0d 20 20 20 77 | this en|try. w|
|00005b50| 69 74 68 20 74 68 65 20 | 6d 6f 75 73 65 2e 0d 2d |ith the |mouse..-|
|00005b60| 20 55 73 65 20 74 68 65 | 20 43 6f 70 79 20 63 6f | Use the| Copy co|
|00005b70| 6d 6d 61 6e 64 20 74 6f | 20 63 6f 70 79 20 69 74 |mmand to| copy it|
|00005b80| 20 74 6f 20 74 68 65 20 | 63 6c 69 70 62 6f 61 72 | to the |clipboar|
|00005b90| 64 2e 0d 2d 20 53 65 6c | 65 63 74 20 45 6e 74 65 |d..- Sel|ect Ente|
|00005ba0| 72 20 50 61 74 74 65 72 | 6e 20 66 72 6f 6d 20 74 |r Patter|n from t|
|00005bb0| 68 65 20 50 72 6f 73 69 | 74 65 20 6d 65 6e 75 2e |he Prosi|te menu.|
|00005bc0| 0d 2d 20 55 73 65 20 50 | 61 73 74 65 20 74 6f 20 |.- Use P|aste to |
|00005bd0| 69 6e 73 65 72 74 20 74 | 68 65 20 70 61 74 74 65 |insert t|he patte|
|00005be0| 72 6e 20 69 6e 74 6f 20 | 74 68 65 20 65 64 69 74 |rn into |the edit|
|00005bf0| 20 66 69 65 6c 64 2e 0d | 2d 20 43 6c 69 63 6b 20 | field..|- Click |
|00005c00| 4f 4b 2e 0d 0d 54 68 65 | 20 73 65 61 72 63 68 20 |OK...The| search |
|00005c10| 77 69 6c 6c 20 62 65 20 | 6d 75 63 68 20 66 61 73 |will be |much fas|
|00005c20| 74 65 72 20 74 68 61 6e | 20 61 20 73 65 61 72 63 |ter than| a searc|
|00005c30| 68 20 69 6e 69 74 69 61 | 74 65 64 20 62 79 20 73 |h initia|ted by s|
|00005c40| 65 6c 65 63 74 69 6e 67 | 20 6f 6e 6c 79 20 6f 6e |electing| only on|
|00005c50| 65 20 65 6e 74 72 79 20 | 69 6e 20 74 68 65 20 70 |e entry |in the p|
|00005c60| 61 74 74 65 72 6e 20 6c | 69 73 74 2e 20 0d 0d a5 |attern l|ist. ...|
|00005c70| 20 53 6f 72 74 20 52 65 | 73 75 6c 74 73 20 62 79 | Sort Re|sults by|
|00005c80| 20 50 61 74 74 65 72 6e | 20 61 6e 64 20 53 6f 72 | Pattern| and Sor|
|00005c90| 74 20 52 65 73 75 6c 74 | 73 20 62 79 20 4c 6f 63 |t Result|s by Loc|
|00005ca0| 61 74 69 6f 6e 0d 0d 54 | 68 65 73 65 20 6d 65 6e |ation..T|hese men|
|00005cb0| 75 20 63 6f 6d 6d 61 6e | 64 73 20 61 72 65 20 75 |u comman|ds are u|
|00005cc0| 73 65 64 20 74 6f 20 73 | 65 6c 65 63 74 20 74 68 |sed to s|elect th|
|00005cd0| 65 20 66 6f 72 6d 61 74 | 20 69 6e 20 77 68 69 63 |e format| in whic|
|00005ce0| 68 20 74 68 65 20 73 65 | 61 72 63 68 20 72 65 73 |h the se|arch res|
|00005cf0| 75 6c 74 73 20 61 72 65 | 20 61 72 72 61 6e 67 65 |ults are| arrange|
|00005d00| 64 2e 20 54 68 65 20 63 | 75 72 72 65 6e 74 6c 79 |d. The c|urrently|
|00005d10| 20 73 65 6c 65 63 74 65 | 64 20 6f 70 74 69 6f 6e | selecte|d option|
|00005d20| 20 69 73 20 69 6e 64 69 | 63 61 74 65 64 20 62 79 | is indi|cated by|
|00005d30| 20 61 20 63 68 65 63 6b | 20 6d 61 72 6b 2e 0d 0d | a check| mark...|
|00005d40| 49 66 20 79 6f 75 20 63 | 68 6f 6f 73 65 20 53 6f |If you c|hoose So|
|00005d50| 72 74 20 52 65 73 75 6c | 74 73 20 62 79 20 50 61 |rt Resul|ts by Pa|
|00005d60| 74 74 65 72 6e 2c 20 74 | 68 65 6e 20 61 6e 79 20 |ttern, t|hen any |
|00005d70| 68 69 74 73 20 77 69 6c | 6c 20 62 65 20 67 72 6f |hits wil|l be gro|
|00005d80| 75 70 65 64 20 62 79 20 | 70 61 74 74 65 72 6e 73 |uped by |patterns|
|00005d90| 2c 20 69 6e 20 74 68 65 | 20 6f 72 64 65 72 20 69 |, in the| order i|
|00005da0| 6e 20 77 68 69 63 68 20 | 74 68 65 20 70 61 74 74 |n which |the patt|
|00005db0| 65 72 6e 73 20 6f 63 63 | 75 72 20 69 6e 20 74 68 |erns occ|ur in th|
|00005dc0| 65 20 70 61 74 74 65 72 | 6e 20 64 61 74 61 62 61 |e patter|n databa|
|00005dd0| 73 65 2e 0d 0d 49 66 20 | 53 6f 72 74 20 52 65 73 |se...If |Sort Res|
|00005de0| 75 6c 74 73 20 62 79 20 | 4c 6f 63 61 74 69 6f 6e |ults by |Location|
|00005df0| 20 69 73 20 73 65 6c 65 | 63 74 65 64 2c 20 6f 75 | is sele|cted, ou|
|00005e00| 74 70 75 74 20 77 69 6c | 6c 20 62 65 20 73 6f 72 |tput wil|l be sor|
|00005e10| 74 65 64 20 61 63 63 6f | 72 64 69 6e 67 20 74 6f |ted acco|rding to|
|00005e20| 20 74 68 65 20 6f 63 63 | 75 72 72 65 6e 63 65 73 | the occ|urrences|
|00005e30| 20 6f 66 20 70 61 74 74 | 65 72 6e 73 20 61 6c 6f | of patt|erns alo|
|00005e40| 6e 67 20 74 68 65 20 73 | 65 71 75 65 6e 63 65 2e |ng the s|equence.|
|00005e50| 0d 0d 52 65 67 61 72 64 | 6c 65 73 73 20 6f 66 20 |..Regard|less of |
|00005e60| 77 68 69 63 68 20 6d 65 | 74 68 6f 64 20 79 6f 75 |which me|thod you|
|00005e70| 20 63 68 6f 6f 73 65 2c | 20 73 6f 72 74 69 6e 67 | choose,| sorting|
|00005e80| 20 69 73 20 70 65 72 66 | 6f 72 6d 65 64 20 66 6f | is perf|ormed fo|
|00005e90| 72 20 65 61 63 68 20 69 | 6e 70 75 74 20 73 65 71 |r each i|nput seq|
|00005ea0| 75 65 6e 63 65 20 69 6e | 64 65 70 65 6e 64 65 6e |uence in|dependen|
|00005eb0| 74 6c 79 20 69 66 20 74 | 68 65 72 65 20 69 73 20 |tly if t|here is |
|00005ec0| 6d 6f 72 65 20 74 68 61 | 6e 20 6f 6e 65 20 73 65 |more tha|n one se|
|00005ed0| 71 75 65 6e 63 65 20 69 | 6e 20 74 68 65 20 73 65 |quence i|n the se|
|00005ee0| 71 75 65 6e 63 65 20 66 | 69 6c 65 2e 0d 0d 00 43 |quence f|ile....C|
|00005ef0| 68 61 6e 67 65 73 20 6f | 66 20 74 68 65 20 73 6f |hanges o|f the so|
|00005f00| 72 74 20 6d 65 74 68 6f | 64 20 63 6f 6d 65 20 69 |rt metho|d come i|
|00005f10| 6e 74 6f 20 65 66 66 65 | 63 74 20 66 6f 72 20 66 |nto effe|ct for f|
|00005f20| 6f 6c 6c 6f 77 69 6e 67 | 20 73 65 61 72 63 68 65 |ollowing| searche|
|00005f30| 73 20 6f 6e 6c 79 2e 20 | 53 65 61 72 63 68 20 72 |s only. |Search r|
|00005f40| 65 73 75 6c 74 73 20 61 | 6c 72 65 61 64 79 20 73 |esults a|lready s|
|00005f50| 68 6f 77 6e 20 6f 6e 20 | 74 68 65 20 73 63 72 65 |hown on |the scre|
|00005f60| 65 6e 20 61 72 65 20 6e | 6f 74 20 61 66 66 65 63 |en are n|ot affec|
|00005f70| 74 65 64 20 77 68 65 6e | 20 74 68 65 20 73 6f 72 |ted when| the sor|
|00005f80| 74 20 6d 65 74 68 6f 64 | 20 69 73 20 61 6c 74 65 |t method| is alte|
|00005f90| 72 65 64 2e 0d 0d a5 20 | 53 68 6f 77 20 45 6e 74 |red.... |Show Ent|
|00005fa0| 72 79 20 4e 61 6d 65 20 | 61 6e 64 20 53 68 6f 77 |ry Name |and Show|
|00005fb0| 20 41 63 63 65 73 73 69 | 6f 6e 20 4e 6f 0d 0d 54 | Accessi|on No..T|
|00005fc0| 68 65 73 65 20 63 6f 6d | 6d 61 6e 64 73 20 63 6f |hese com|mands co|
|00005fd0| 6e 74 72 6f 6c 20 74 68 | 65 20 77 61 79 20 61 20 |ntrol th|e way a |
|00005fe0| 70 61 74 74 65 72 6e 20 | 64 61 74 61 62 61 73 65 |pattern |database|
|00005ff0| 20 66 69 6c 65 20 69 73 | 20 64 69 73 70 6c 61 79 | file is| display|
|00006000| 65 64 20 69 6e 20 61 20 | 64 61 74 61 62 61 73 65 |ed in a |database|
|00006010| 20 62 72 6f 77 73 65 72 | 20 77 69 6e 64 6f 77 2e | browser| window.|
|00006020| 20 54 68 65 20 63 75 72 | 72 65 6e 74 6c 79 20 73 | The cur|rently s|
|00006030| 65 6c 65 63 74 65 64 20 | 6f 70 74 69 6f 6e 20 69 |elected |option i|
|00006040| 73 20 69 6e 64 69 63 61 | 74 65 64 20 62 79 20 61 |s indica|ted by a|
|00006050| 20 63 68 65 63 6b 20 6d | 61 72 6b 2e 0d 0d 49 66 | check m|ark...If|
|00006060| 20 53 68 6f 77 20 45 6e | 74 72 79 20 4e 61 6d 65 | Show En|try Name|
|00006070| 20 69 73 20 63 68 6f 73 | 65 6e 2c 20 74 68 65 20 | is chos|en, the |
|00006080| 65 6e 74 72 79 20 6e 61 | 6d 65 20 6f 66 20 65 61 |entry na|me of ea|
|00006090| 63 68 20 64 61 74 61 62 | 61 73 65 20 65 6e 74 72 |ch datab|ase entr|
|000060a0| 79 20 69 73 20 73 68 6f | 77 6e 20 69 6e 20 74 68 |y is sho|wn in th|
|000060b0| 65 20 62 72 6f 77 73 65 | 72 2e 20 49 66 20 53 68 |e browse|r. If Sh|
|000060c0| 6f 77 20 41 63 63 65 73 | 73 69 6f 6e 20 4e 6f 20 |ow Acces|sion No |
|000060d0| 69 73 20 73 65 6c 65 63 | 74 65 64 2c 20 74 68 65 |is selec|ted, the|
|000060e0| 20 63 6f 72 72 65 73 70 | 6f 6e 64 69 6e 67 20 61 | corresp|onding a|
|000060f0| 63 63 65 73 73 69 6f 6e | 20 6e 75 6d 62 65 72 20 |ccession| number |
|00006100| 69 73 20 73 68 6f 77 6e | 20 69 6e 73 74 65 61 64 |is shown| instead|
|00006110| 2e 20 43 68 61 6e 67 65 | 73 20 6f 66 20 74 68 69 |. Change|s of thi|
|00006120| 73 20 70 61 72 61 6d 65 | 74 65 72 20 63 6f 6d 65 |s parame|ter come|
|00006130| 20 69 6e 74 6f 20 65 66 | 66 65 63 74 20 69 6d 6d | into ef|fect imm|
|00006140| 65 64 69 61 74 65 6c 79 | 20 61 6e 64 20 61 66 66 |ediately| and aff|
|00006150| 65 63 74 20 61 6c 6c 20 | 70 61 74 74 65 72 6e 20 |ect all |pattern |
|00006160| 64 61 74 61 62 61 73 65 | 20 62 72 6f 77 73 65 72 |database| browser|
|00006170| 20 77 69 6e 64 6f 77 73 | 20 63 75 72 72 65 6e 74 | windows| current|
|00006180| 6c 79 20 6f 70 65 6e 20 | 61 73 20 77 65 6c 6c 20 |ly open |as well |
|00006190| 61 73 20 74 68 6f 73 65 | 20 74 68 61 74 20 77 69 |as those| that wi|
|000061a0| 6c 6c 20 62 65 20 6f 70 | 65 6e 65 64 20 61 66 74 |ll be op|ened aft|
|000061b0| 65 72 77 61 72 64 73 2e | 00 00 07 df 41 66 74 65 |erwards.|....Afte|
|000061c0| 72 20 61 20 64 61 74 61 | 62 61 73 65 20 69 6e 64 |r a data|base ind|
|000061d0| 65 78 20 66 69 6c 65 20 | 68 61 73 20 62 65 65 6e |ex file |has been|
|000061e0| 20 6c 6f 61 64 65 64 20 | 74 68 69 73 20 77 69 6e | loaded |this win|
|000061f0| 64 6f 77 20 64 69 73 70 | 6c 61 79 73 20 61 20 6c |dow disp|lays a l|
|00006200| 69 73 74 20 6f 66 20 61 | 6c 6c 20 74 68 65 20 65 |ist of a|ll the e|
|00006210| 6e 74 72 69 65 73 20 69 | 6e 20 74 68 65 20 64 61 |ntries i|n the da|
|00006220| 74 61 62 61 73 65 2e 20 | 0d 0d 54 68 69 73 20 77 |tabase. |..This w|
|00006230| 69 6e 64 6f 77 20 69 73 | 20 6f 6e 6c 79 20 76 65 |indow is| only ve|
|00006240| 72 74 69 63 61 6c 6c 79 | 20 73 69 7a 65 61 62 6c |rtically| sizeabl|
|00006250| 65 2e 20 59 6f 75 20 6d | 61 79 20 73 63 72 6f 6c |e. You m|ay scrol|
|00006260| 6c 20 74 68 72 6f 75 67 | 68 20 74 68 65 20 6c 69 |l throug|h the li|
|00006270| 73 74 20 75 73 69 6e 67 | 20 74 68 65 20 73 63 72 |st using| the scr|
|00006280| 6f 6c 6c 20 62 61 72 20 | 6f 72 20 74 68 65 20 73 |oll bar |or the s|
|00006290| 70 65 63 69 61 6c 20 6b | 65 79 73 20 6f 6e 20 61 |pecial k|eys on a|
|000062a0| 6e 20 65 78 74 65 6e 64 | 65 64 20 4d 61 63 69 6e |n extend|ed Macin|
|000062b0| 74 6f 73 68 20 6b 65 79 | 62 6f 61 72 64 2e 0d 0d |tosh key|board...|
|000062c0| 44 65 70 65 6e 64 69 6e | 67 20 6f 6e 20 77 68 65 |Dependin|g on whe|
|000062d0| 74 68 65 72 20 79 6f 75 | 20 68 61 76 65 20 63 68 |ther you| have ch|
|000062e0| 6f 73 65 6e 20 53 68 6f | 77 20 45 6e 74 72 79 20 |osen Sho|w Entry |
|000062f0| 4e 61 6d 65 20 6f 72 20 | 53 68 6f 77 20 41 63 63 |Name or |Show Acc|
|00006300| 65 73 73 69 6f 6e 20 4e | 6f 20 66 72 6f 6d 20 74 |ession N|o from t|
|00006310| 68 65 20 50 72 6f 73 69 | 74 65 20 6f 72 20 42 6c |he Prosi|te or Bl|
|00006320| 6f 63 6b 73 20 6d 65 6e | 75 2c 20 74 68 65 20 6c |ocks men|u, the l|
|00006330| 69 73 74 20 77 69 6c 6c | 20 64 69 73 70 6c 61 79 |ist will| display|
|00006340| 20 65 6e 74 72 79 20 6e | 61 6d 65 73 20 6f 72 20 | entry n|ames or |
|00006350| 61 63 63 65 73 73 69 6f | 6e 20 6e 75 6d 62 65 72 |accessio|n number|
|00006360| 73 20 6f 66 20 64 61 74 | 61 62 61 73 65 20 65 6e |s of dat|abase en|
|00006370| 74 72 69 65 73 2e 0d 0d | 54 68 65 20 73 65 6c 65 |tries...|The sele|
|00006380| 63 74 69 6f 6e 20 6f 66 | 20 64 61 74 61 62 61 73 |ction of| databas|
|00006390| 65 20 65 6e 74 72 69 65 | 73 20 69 73 20 73 6c 69 |e entrie|s is sli|
|000063a0| 67 68 74 6c 79 20 64 69 | 66 66 65 72 65 6e 74 20 |ghtly di|fferent |
|000063b0| 66 72 6f 6d 20 74 68 65 | 20 73 74 61 6e 64 61 72 |from the| standar|
|000063c0| 64 20 4d 61 63 69 6e 74 | 6f 73 68 20 73 65 6c 65 |d Macint|osh sele|
|000063d0| 63 74 69 6f 6e 20 74 65 | 63 68 6e 69 71 75 65 73 |ction te|chniques|
|000063e0| 2c 20 62 75 74 20 68 6f | 70 65 66 75 6c 6c 79 20 |, but ho|pefully |
|000063f0| 6d 6f 72 65 20 63 6f 6e | 76 65 6e 69 65 6e 74 20 |more con|venient |
+--------+-------------------------+-------------------------+--------+--------+
Only 25.0 KB of data is shown above.