org.sStu
Interface ScoreOnlyAligner
- All Superinterfaces:
- Aligner
- All Known Subinterfaces:
- AlignmentRangeAligner, SingleAlingmentAligner
- public interface ScoreOnlyAligner
- extends Aligner
Defines an aligner that returns the score
of the best alignment only. This allows to use faster algoritms,
increasing the performance up to four times. If the score
is above the level of interest, the alignment can be
re-computed using other aligners.
- Author:
- Audrius Meskauskas
- See Also:
http://www.gnu.org/licenses/gpl.txt
getAlignmentScore
public int getAlignmentScore()
- Get the score of this alignment
- Returns:
- The score of the alingment.