org.sStu
Interface SingleAlingmentAligner
- All Superinterfaces:
- Aligner, ScoreOnlyAligner
- public interface SingleAlingmentAligner
- extends ScoreOnlyAligner
Defines an aligner that returns one (best) alignment and its score.
These aligners are used when only the best alignment is the point
of interest. They have the intermediate performace between ScoreOnly-
and AlinmentRand- aligners.
- Author:
- Audrius Meskauskas
- See Also:
http://www.gnu.org/licenses/gpl.txt
getBestAlignment
public Alignment getBestAlignment()
- Get the best alignment.
- Returns:
- The best alignment