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Represents the alignment.
http://www.gnu.org/licenses/gpl.txt
Method Summary | |
int |
getAlignmentScore()
Return the score of the alignment. |
java.lang.CharSequence |
getMiddleString()
Get the "middle line" of the alignment, explaining the comparison process. |
java.lang.CharSequence |
getSequence(int number)
Get the given sequence, previously set with setSequence(..). |
java.lang.String |
toString()
Returns a string representation of the alignment. |
Method Detail |
public java.lang.CharSequence getSequence(int number) throws java.lang.ArrayIndexOutOfBoundsException
number
- The sequence number, counting from 0 (for two sequence alignment, only values 0 and 1 are valid.
java.lang.ArrayIndexOutOfBoundsException
- if the number
is negative of refers above the valid range.public java.lang.CharSequence getMiddleString()
public int getAlignmentScore()
public java.lang.String toString()
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