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Packages that use Tree | |
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org.metaqtl | |
org.metaqtl.algo | |
org.metaqtl.factory |
Uses of Tree in org.metaqtl |
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Fields in org.metaqtl declared as Tree | |
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Tree |
MetaQtlResult.tree
The qtl tree |
Tree |
QtlPartition.tree
The Qtl tree. |
Methods in org.metaqtl that return Tree | |
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Tree |
MetaQtlResult.getQtlTree()
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Methods in org.metaqtl with parameters of type Tree | |
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void |
MetaQtlResult.setTree(Tree tree)
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void |
QtlPartition.setTree(Tree tree)
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Uses of Tree in org.metaqtl.algo |
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Methods in org.metaqtl.algo that return Tree | |
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static Tree |
HClustAlgorithm.CentroidMethod(double[] x,
double[] sd)
This method performs a hierarchical clustering of the given data points using a centroid method based on the mahalanobis distance. |
static Tree |
HClustAlgorithm.run(double[] x,
double[] sd)
This method performs a agglomerative clustering of the given data points where x is the
vector of observed values and sd the
vector of their standard deviations. |
static Tree |
HClustAlgorithm.WardMethod(double[] x,
double[] sd)
This method performs a hierarchical clustering of the given data points using the Ward's method. |
Uses of Tree in org.metaqtl.factory |
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Methods in org.metaqtl.factory that return Tree | |
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static Tree |
TreeFactory.read_newick(java.io.Reader reader)
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static Tree |
TreeFactory.read_newick(java.lang.String treeStr)
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static Tree |
TreeFactory.read(java.io.Reader reader)
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static Tree |
TreeFactory.read(java.lang.String str)
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Methods in org.metaqtl.factory with parameters of type Tree | |
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static void |
TreeFactory.write(Tree tree,
java.io.OutputStream stream)
This method writes out the given tree nodes as an array of
TreeNode on the given output stream stream. |
static void |
TreeFactory.write(Tree tree,
java.io.PrintWriter writer)
This method writes out the given tree nodes as an array of
TreeNode using the given writer writer. |
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