A B C D E F G H I K L M N O P Q R S T U V W X Y Z

T

TEXT_WIDTH - Static variable in class org.metaqtl.graph.QtlLayer
The default width of the Text attribute of the Qtl
theta - Variable in class org.metaqtl.MultiFitResult
The parameter estimates.
TICK_CEX_HEIGHT - Static variable in class org.metaqtl.graph.QtlLayer
The default cex parameter for the tick height of the Qtl
TICK_CEX_WIDTH - Static variable in class org.metaqtl.graph.QtlLayer
The default cex parameter for the tick width of the Qtl
TINY_MAPPING_DISTANCE - Static variable in interface org.metaqtl.IMetaQtlConstants
The minimal distance in morgan
TINY_MAPPING_VARIANCE - Static variable in interface org.metaqtl.IMetaQtlConstants
the minimal variance in morgan
TINY_Z_PROBA - Static variable in class org.metaqtl.algo.EMAlgorithm
The minimal value for Z proba in EM-clustering
to - Variable in class org.metaqtl.Qtl.QTLSupport
The position from the first marker to the right border of the IC.
toChromosome(IBioLGroup, IBioCross, int, int) - Static method in class org.metaqtl.adapter.ChromosomeAdapter
This method converts a linkage group into a chromosome of type Chromosome with the given cross design and the given mapping context.
toChromosomes(IBioGenome) - Static method in class org.metaqtl.adapter.ChromosomeAdapter
This methods converts the given map into an array of Chromosome which represents the chromosomes of the input mpe.
toEntity(BioEntityBean, IBioEntity) - Static method in class org.thalia.bio.entity.adapter.BioEntityAdapter
 
toEntity(Object) - Method in class org.thalia.bio.entity.adapter.BioEntityCollectionAdapter
 
toEntity(Object) - Method in class org.thalia.bio.entity.adapter.GeneticMapBeanAdapter
 
toEntity(Object) - Method in class org.thalia.bio.entity.adapter.LGroupBeanAdapter
 
toEntity(Object) - Method in class org.thalia.bio.entity.adapter.LocusBeanAdapter
 
toEntity(Object) - Method in class org.thalia.bio.entity.adapter.OntologyBeanAdapter
 
toEntity(Object) - Method in class org.thalia.bio.entity.adapter.OntologyTermBeanAdapter
 
toEntity(Object) - Method in interface org.thalia.bio.IBioAdapter
Convert the given bio entity object into another compliant object.
toIBioGenome(Chromosome[], int) - Static method in class org.metaqtl.adapter.ChromosomeAdapter
This routine converts an array of chromosomes into a genetic map with as many chromosomes as the length of the array.
toIBioGenome(MetaMap) - Static method in class org.metaqtl.adapter.MetaMapAdapter
This methos convert a MetaMap object into an object which is consistent with the IBioGenome interface.
toQTL(IBioLocus) - Static method in class org.metaqtl.adapter.QtlAdapter
This method converts an object which class implements the IBioLocus interface into a Qtl.
toString() - Method in class org.metaqtl.Chromosome
 
toString() - Method in class org.metaqtl.MultiFitResult
 
toString() - Method in class org.thalia.bio.entity.LGroup
 
totd - Variable in class org.metaqtl.Chromosome
The total distance of the chromosome.
trait - Variable in class org.metaqtl.MetaQtlResult
The name of the trait.
trait - Variable in class org.metaqtl.Qtl
The QTL trait data.
traitNames - Variable in class org.metaqtl.MetaQtlModel
The trait names per chromosome.
transformY(double) - Method in class org.metaqtl.graph.ChromAxe
Do a affine transformation of the given position d which is assumed to be in [0,dmax] in order to have its representation in the chromosome axe.
tree - Variable in class org.metaqtl.MetaQtlResult
The qtl tree
tree - Variable in class org.metaqtl.QtlPartition
The Qtl tree.
Tree - Class in org.metaqtl
This class defines a tree.
Tree() - Constructor for class org.metaqtl.Tree
 
Tree(TreeNode) - Constructor for class org.metaqtl.Tree
 
tree_method - Variable in class org.metaqtl.algo.QtlTreeAlgorithm
This global variable defines the method used by the aglomerative hierarchical clustering.
TREE_NODE_WIDTH - Static variable in class org.metaqtl.graph.MetaGraphPar
 
TreeFactory - Class in org.metaqtl.factory
A factory to deal with distance trees.
TreeFactory() - Constructor for class org.metaqtl.factory.TreeFactory
 
TreeNode - Class in org.metaqtl
This class represents a node in a binary Tree obtained when applying usual hirarchical clustering methods.
TreeNode(int) - Constructor for class org.metaqtl.TreeNode
Creates a new instance of TreeNode with the given indice idx.
TreeNode(int, TreeNode[]) - Constructor for class org.metaqtl.TreeNode
Creates a new instance of TreeNode with the given indice idx and the children of the node.
TreeNode() - Constructor for class org.metaqtl.TreeNode
Creates a new instance of TreeNode with default attribute values.
type - Variable in class org.metaqtl.Qtl.QTLCross
The type of the cross.
type - Variable in class org.thalia.bio.entity.bean.LocusBean
 
type - Static variable in class org.thalia.bio.util.BioCrossTypes
 
TypesString - Static variable in interface org.thalia.bio.IBioLocus
 
typeToString(int) - Static method in class org.thalia.bio.util.BioLocusTypes
 

A B C D E F G H I K L M N O P Q R S T U V W X Y Z