org.metaqtl
Class MetaChrom

java.lang.Object
  extended by org.metaqtl.MetaChrom

public class MetaChrom
extends java.lang.Object

A MetaChrom is the result of the merge of the members of a ChromCluster.


Field Summary
 double chi2
          The chi-square value of this chromosome.
 double[] d
          The absolute positions of markers in Morgan.
 int dof
          The number of degrees of freedom.
 java.lang.String[] mapNames
          The names of the genetic maps.
 java.lang.String[] mrkNames
          The ordered marker names.
 int[] mrkOc
          The number of occurence per marker oved chromosomes.
 java.lang.String name
          The name of the meta chrom.
 int nc
          The number of chromosomes implied.
 int ni
          The number of marker intervals implied in this consensus.
 int nm
          The number of markers.
 int[] nmc
          The number of marker per implied chromosome
 double pvalue
          The p-value of this chromosome.
 double[] rsd
          The standardized residual between original marker intervals and those of the meta chromosome.
 double[] sdd
          The standard deviation of the position in Morgan.
 
Constructor Summary
MetaChrom(MultiFitResult result, ChromCluster chromCluster)
          Get a new instance of MetaChrom which is initialized by using the result of the merge of the members of a ChromCluster.
 
Method Summary
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

nc

public int nc
The number of chromosomes implied.


nm

public int nm
The number of markers.


ni

public int ni
The number of marker intervals implied in this consensus.


dof

public int dof
The number of degrees of freedom.


nmc

public int[] nmc
The number of marker per implied chromosome


mrkOc

public int[] mrkOc
The number of occurence per marker oved chromosomes.


chi2

public double chi2
The chi-square value of this chromosome.


pvalue

public double pvalue
The p-value of this chromosome.


rsd

public double[] rsd
The standardized residual between original marker intervals and those of the meta chromosome.


d

public double[] d
The absolute positions of markers in Morgan.


sdd

public double[] sdd
The standard deviation of the position in Morgan.


name

public java.lang.String name
The name of the meta chrom.


mapNames

public java.lang.String[] mapNames
The names of the genetic maps.


mrkNames

public java.lang.String[] mrkNames
The ordered marker names.

Constructor Detail

MetaChrom

public MetaChrom(MultiFitResult result,
                 ChromCluster chromCluster)
Get a new instance of MetaChrom which is initialized by using the result of the merge of the members of a ChromCluster.

Parameters:
result - the result of the merge of the members of the cluster.
cluster - the chromosome cluster.