org.metaqtl.bio.entity
Class GeneticMap

java.lang.Object
  extended by org.metaqtl.bio.entity.BioEntity
      extended by org.metaqtl.bio.entity.BioEntityContainer
          extended by org.metaqtl.bio.entity.GroupContainer
              extended by org.metaqtl.bio.entity.GeneticMap
All Implemented Interfaces:
IBioAdaptable, IBioEntity, IBioGenome

public class GeneticMap
extends GroupContainer

Class Description Here

Author:
Jean-Baptiste Veyrieras

Field Summary
 
Fields inherited from class org.metaqtl.bio.entity.BioEntityContainer
entities
 
Fields inherited from class org.metaqtl.bio.entity.BioEntity
name, parent, properties
 
Constructor Summary
GeneticMap()
           
GeneticMap(java.lang.String name)
           
GeneticMap(java.lang.String name, IBioEntity parent)
           
 
Method Summary
 IBioAdapter getBioAdapter()
           
 int getType()
          There are 2 main class of entities.
 GeneticMap merge(GeneticMap map)
          Deprecated.  
 
Methods inherited from class org.metaqtl.bio.entity.GroupContainer
addGroup, getGroup, groupNumber, groups, removeGroup
 
Methods inherited from class org.metaqtl.bio.entity.BioEntityContainer
addEntity, entities, entityNumber, getEntity, removeEntity
 
Methods inherited from class org.metaqtl.bio.entity.BioEntity
getName, getParent, getProperties, newBioEntity, setName, setProperties
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface org.metaqtl.bio.IBioEntity
getName, getParent, getProperties, setName, setProperties
 

Constructor Detail

GeneticMap

public GeneticMap()

GeneticMap

public GeneticMap(java.lang.String name,
                  IBioEntity parent)
Parameters:
name -
parent -

GeneticMap

public GeneticMap(java.lang.String name)
Parameters:
name -
Method Detail

merge

public GeneticMap merge(GeneticMap map)
Deprecated. 

Parameters:
map -
Returns:

getType

public int getType()
Description copied from interface: IBioEntity
There are 2 main class of entities. The first one deals with population biological entity, i.e population itself and individuals. The second class is a representation of microscopic biological entity from genome container to alleles.

Specified by:
getType in interface IBioEntity
Specified by:
getType in class GroupContainer

getBioAdapter

public IBioAdapter getBioAdapter()