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Packages that use org.metaqtl | |
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org.metaqtl | |
org.metaqtl.adapter | |
org.metaqtl.algo | |
org.metaqtl.factory | |
org.metaqtl.graph | |
org.metaqtl.main |
Classes in org.metaqtl used by org.metaqtl | |
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ChromCluster
A cluster of chromosomes which share the same name inside a MapCluster framwork. |
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ChromCluster.ClusterGraph
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Chromosome
On a Chromosome there are two types of locus : Marker QTL (Quantitative Trait Loci) inside a mapping context which is defined by both the mapping framework (function and unit) and the population cross design used to build this chromosome. |
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CMarkerSequence
A Common marker sequence between two ordered set of markers is a sub-set of at least two markers which order is the same between the two sets (may be reverse). |
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EMCriteria
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EMResult
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MetaChrom
A MetaChrom is the result of the merge of the members of a ChromCluster . |
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MetaDico
This class represents a dictionnary of synonyms. |
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MetaQtlModel
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MetaQtlResult
A MetaQtlResult is used to store the
results of a QTL meta analysis which has been performed
for a given trait group on a given chromosome. |
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MultiFitResult
This class represents a result of a multilinear regression analysis. |
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Qtl
A QTL (Quantitative Trait Loci) |
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Qtl.QTLCross
This class stores the informations on the cross design used to detect the QTL. |
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Qtl.QTLProj
This class stores the QTL projection properties. |
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Qtl.QTLStats
This class stores the usual statistics for the QTL. |
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Qtl.QTLSupport
This class stores information on the QTL Confidence Interval |
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Qtl.QTLTrait
This class stores the trait description of a QTL |
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Tree
This class defines a tree. |
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TreeNode
This class represents a node in a binary Tree obtained when applying usual hirarchical clustering methods. |
Classes in org.metaqtl used by org.metaqtl.adapter | |
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Chromosome
On a Chromosome there are two types of locus : Marker QTL (Quantitative Trait Loci) inside a mapping context which is defined by both the mapping framework (function and unit) and the population cross design used to build this chromosome. |
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EMResult
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MetaMap
A MetaMap is a bundle of MetaChrom objects. |
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MetaQtlAnalysis
A QTL meta analysis consists in a clustering of QTL positions over chromosomes for different group of traits. |
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MetaQtlData
QTL meta analysis first requires to gather the QTL according to the group trait they belong and then to format the QTL data into data points to perfom clustering. |
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MetaQtlResult
A MetaQtlResult is used to store the
results of a QTL meta analysis which has been performed
for a given trait group on a given chromosome. |
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Qtl
A QTL (Quantitative Trait Loci) |
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QtlPartition
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Classes in org.metaqtl used by org.metaqtl.algo | |
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ChromCluster
A cluster of chromosomes which share the same name inside a MapCluster framwork. |
|
Chromosome
On a Chromosome there are two types of locus : Marker QTL (Quantitative Trait Loci) inside a mapping context which is defined by both the mapping framework (function and unit) and the population cross design used to build this chromosome. |
|
CMarkerSequence
A Common marker sequence between two ordered set of markers is a sub-set of at least two markers which order is the same between the two sets (may be reverse). |
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EMResult
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IMetaAlgorithm
This interface defines some methods which are common to data analysis algorithms. |
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MetaChrom
A MetaChrom is the result of the merge of the members of a ChromCluster . |
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MetaDico
This class represents a dictionnary of synonyms. |
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MetaMap
A MetaMap is a bundle of MetaChrom objects. |
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MetaQtlAnalysis
A QTL meta analysis consists in a clustering of QTL positions over chromosomes for different group of traits. |
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MetaQtlData
QTL meta analysis first requires to gather the QTL according to the group trait they belong and then to format the QTL data into data points to perfom clustering. |
|
MetaQtlResult
A MetaQtlResult is used to store the
results of a QTL meta analysis which has been performed
for a given trait group on a given chromosome. |
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MultiFitResult
This class represents a result of a multilinear regression analysis. |
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Tree
This class defines a tree. |
Classes in org.metaqtl used by org.metaqtl.factory | |
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EMResult
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MetaDico
This class represents a dictionnary of synonyms. |
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MetaMap
A MetaMap is a bundle of MetaChrom objects. |
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MetaQtlAnalysis
A QTL meta analysis consists in a clustering of QTL positions over chromosomes for different group of traits. |
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MetaQtlModel
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Tree
This class defines a tree. |
Classes in org.metaqtl used by org.metaqtl.graph | |
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Chromosome
On a Chromosome there are two types of locus : Marker QTL (Quantitative Trait Loci) inside a mapping context which is defined by both the mapping framework (function and unit) and the population cross design used to build this chromosome. |
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QtlPartition
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Classes in org.metaqtl used by org.metaqtl.main | |
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ChromCluster
A cluster of chromosomes which share the same name inside a MapCluster framwork. |
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Chromosome
On a Chromosome there are two types of locus : Marker QTL (Quantitative Trait Loci) inside a mapping context which is defined by both the mapping framework (function and unit) and the population cross design used to build this chromosome. |
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MetaDico
This class represents a dictionnary of synonyms. |
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MetaQtlAnalysis
A QTL meta analysis consists in a clustering of QTL positions over chromosomes for different group of traits. |
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MetaQtlModel
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QtlPartition
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