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B

BACKGROUND_COLOR - Static variable in class org.metaqtl.graph.MetaGraphPar
The color of the backgroud.
base - Static variable in class org.metaqtl.graph.PaletteColor
 
BC - Static variable in interface org.thalia.bio.IBioCrossTypes
 
beta(double, double) - Static method in class org.metaqtl.numrec.NumericalUtilities
Returns the beta function I(a,b)
betacf(double, double, double) - Static method in class org.metaqtl.numrec.NumericalUtilities
Used by betai : Evaluates continued fraction for incomplete beta function by modified Lentz's method.
betai(double, double, double) - Static method in class org.metaqtl.numrec.NumericalUtilities
Returns the incomplete beta function Ix(a,b)
BIC - Static variable in class org.metaqtl.EMCriteria
 
bic - Variable in class org.metaqtl.EMCriteria
 
BIC_NAME - Static variable in class org.metaqtl.EMCriteria
 
BioCrossTypes - Class in org.thalia.bio.util
 
BioCrossTypes() - Constructor for class org.thalia.bio.util.BioCrossTypes
 
BioEntity - Class in org.thalia.bio.entity
Class Description Here
BioEntity() - Constructor for class org.thalia.bio.entity.BioEntity
 
BioEntity(String, IBioEntity) - Constructor for class org.thalia.bio.entity.BioEntity
 
BioEntityAdapter - Class in org.thalia.bio.entity.adapter
Class Description Here
BioEntityAdapter() - Constructor for class org.thalia.bio.entity.adapter.BioEntityAdapter
 
BioEntityBean - Class in org.thalia.bio.entity.bean
Class Description Here
BioEntityBean() - Constructor for class org.thalia.bio.entity.bean.BioEntityBean
 
BioEntityCollection - Class in org.thalia.bio.entity
Class Description Here
BioEntityCollection() - Constructor for class org.thalia.bio.entity.BioEntityCollection
 
BioEntityCollection(int) - Constructor for class org.thalia.bio.entity.BioEntityCollection
 
BioEntityCollectionAdapter - Class in org.thalia.bio.entity.adapter
Class Description Here
BioEntityCollectionAdapter() - Constructor for class org.thalia.bio.entity.adapter.BioEntityCollectionAdapter
 
BioEntityCollectionBean - Class in org.thalia.bio.entity.bean
Class Description Here
BioEntityCollectionBean() - Constructor for class org.thalia.bio.entity.bean.BioEntityCollectionBean
 
BioEntityContainer - Class in org.thalia.bio.entity
Class Description Here
BioEntityContainer() - Constructor for class org.thalia.bio.entity.BioEntityContainer
 
BioEntityContainer(String, IBioEntity) - Constructor for class org.thalia.bio.entity.BioEntityContainer
 
BioEntityFactory - Class in org.thalia.bio.entity.factory
Class Description Here
BioEntityFactory() - Constructor for class org.thalia.bio.entity.factory.BioEntityFactory
 
BioEntityNameComparator - Class in org.thalia.bio.util
Class Description Here
BioLocusTypes - Class in org.thalia.bio.util
 
BioLocusTypes() - Constructor for class org.thalia.bio.util.BioLocusTypes
 
BioUtilities - Class in org.thalia.bio.util
General comments must be added here.
BioUtilities() - Constructor for class org.thalia.bio.util.BioUtilities
 
BOX_HEIGHT - Static variable in class org.metaqtl.graph.GraphFactory
 
BOX_WIDTH - Static variable in class org.metaqtl.graph.GraphFactory
 
build(Graphics2D) - Method in class org.metaqtl.graph.ChromLayer
 
build(Graphics2D) - Method in class org.metaqtl.graph.Layer
Build the layer.
build(Graphics2D) - Method in class org.metaqtl.graph.QtlLayer
 
build(Graphics2D) - Method in class org.metaqtl.graph.QtlPartitionLayer
 
build(Graphics2D) - Method in class org.metaqtl.graph.QtlTreeLayer
 
buildQtlTree(MetaQtlData) - Method in class org.metaqtl.algo.QtlTreeAlgorithm
For the given data points this method build the tree which represents the hierarchical clustering.
buildShape(Graphics2D, Object) - Method in class org.metaqtl.graph.ChromShape
 
buildShape(Graphics2D, Object) - Method in class org.metaqtl.graph.GraphShape
 
buildShape(Graphics2D, Object) - Method in class org.metaqtl.graph.QtlShape
This methods create a new QtlShape from the given graphics context.

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