Package org.metaqtl

Interface Summary
IBioGenomeProperties This interface defines both the keys and the default values of properties which can be handled by a org.thalia.bio.entity.IBioGenome.
IBioLGroupProperties This interface defines the key of properties which can be handled by a org.thalia.bio.entity.IBioLGroup.
IBioLocusProperties This interface defines the key of the properties which can be handled by a org.thalia.bio.entity.IBioLocus.
IMetaAlgorithm This interface defines some methods which are common to data analysis algorithms.
IMetaQtlConstants This interface defines some global constants which are used by several classes of the package.
 

Class Summary
ChromCluster A cluster of chromosomes which share the same name inside a MapCluster framwork.
Chromosome On a Chromosome there are two types of locus : Marker QTL (Quantitative Trait Loci) inside a mapping context which is defined by both the mapping framework (function and unit) and the population cross design used to build this chromosome.
CMarkerSequence A Common marker sequence between two ordered set of markers is a sub-set of at least two markers which order is the same between the two sets (may be reverse).
EMCriteria  
EMResult  
MapCluster  
MetaChrom A MetaChrom is the result of the merge of the members of a ChromCluster.
MetaDico This class represents a dictionnary of synonyms.
MetaMap A MetaMap is a bundle of MetaChrom objects.
MetaQtlAnalysis A QTL meta analysis consists in a clustering of QTL positions over chromosomes for different group of traits.
MetaQtlData QTL meta analysis first requires to gather the QTL according to the group trait they belong and then to format the QTL data into data points to perfom clustering.
MetaQtlModel  
MetaQtlResult A MetaQtlResult is used to store the results of a QTL meta analysis which has been performed for a given trait group on a given chromosome.
MultiFitResult This class represents a result of a multilinear regression analysis.
Qtl A QTL (Quantitative Trait Loci)
QtlPartition  
Tree This class defines a tree.
TreeNode This class represents a node in a binary Tree obtained when applying usual hirarchical clustering methods.