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Packages that use Chromosome | |
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org.metaqtl | |
org.metaqtl.adapter | |
org.metaqtl.algo | |
org.metaqtl.graph | |
org.metaqtl.main |
Uses of Chromosome in org.metaqtl |
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Fields in org.metaqtl declared as Chromosome | |
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Chromosome |
ChromCluster.ClusterEdge.chrom
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Methods in org.metaqtl that return Chromosome | |
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Chromosome[] |
ChromCluster.getClusterMembers()
This method returns the members of the cluster as an array of Chromosomes . |
Chromosome |
Chromosome.getSubChromosome(java.lang.String[] markerNames)
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Methods in org.metaqtl with parameters of type Chromosome | |
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void |
ChromCluster.ClusterGraph.addEdge(Chromosome cur1,
Chromosome cur2,
CMarkerSequence cms)
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static double[] |
Chromosome.getDistHeterogeneity(int ncm,
int[][] mrkIdx,
Chromosome chrom,
Chromosome ref)
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static int |
Chromosome.getFirstCommonMrkIdx(Chromosome chrom,
Chromosome chrom2)
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static double[] |
Chromosome.getRecHeterogeneity(int ncm,
int[][] mrkIdx,
Chromosome chrom,
Chromosome ref)
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Constructors in org.metaqtl with parameters of type Chromosome | |
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ChromCluster.ClusterEdge(CMarkerSequence cms,
Chromosome chrom)
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Uses of Chromosome in org.metaqtl.adapter |
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Methods in org.metaqtl.adapter that return Chromosome | |
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static Chromosome |
ChromosomeAdapter.toChromosome(IBioLGroup group,
IBioCross crossDesign,
int mappingFunction,
int mappingUnit)
This method converts a linkage group into a chromosome of type Chromosome with the given cross design
and the given mapping context. |
static Chromosome[] |
ChromosomeAdapter.toChromosomes(IBioGenome map)
This methods converts the given map into an array of Chromosome which represents
the chromosomes of the input mpe. |
Methods in org.metaqtl.adapter with parameters of type Chromosome | |
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static MetaQtlAnalysis |
MetaQtlAnalysisAdapter.adapt(Chromosome[] chromosomes)
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static IBioGenome |
ChromosomeAdapter.toIBioGenome(Chromosome[] chromosomes,
int gout)
This routine converts an array of chromosomes into a genetic map with as many chromosomes as the length of the array. |
Uses of Chromosome in org.metaqtl.algo |
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Fields in org.metaqtl.algo declared as Chromosome | |
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protected Chromosome[] |
ClustAlgorithm.chromosomes
The chromosome on which the clustering is performed. |
Methods in org.metaqtl.algo that return Chromosome | |
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Chromosome[] |
QtlProjAlgorithm.getResult()
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Methods in org.metaqtl.algo with parameters of type Chromosome | |
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static CMarkerSequence |
CMSAlgorithm.run(Chromosome chrom1,
Chromosome chrom2)
This methods find the common marker sequences between the two given chromosomes. |
Uses of Chromosome in org.metaqtl.graph |
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Fields in org.metaqtl.graph declared as Chromosome | |
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Chromosome |
ChromGraph.chromosome
The chromosome to draw |
Uses of Chromosome in org.metaqtl.main |
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Methods in org.metaqtl.main that return Chromosome | |
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static Chromosome[] |
MetaMain.getChromByNames(Chromosome[] chroms,
java.lang.String[] chromNames)
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Methods in org.metaqtl.main with parameters of type Chromosome | |
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static Chromosome[] |
MetaMain.getChromByNames(Chromosome[] chroms,
java.lang.String[] chromNames)
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static ChromGraph[] |
MetaMain.getChromGraph(Chromosome[] chroms,
boolean withQtl,
int modeQtl,
IBioOntology ontology,
MetaQtlAnalysis treeAnalysis)
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static QtlPartition |
MetaMain.getQtlPartition(Chromosome chromosome,
IBioOntology ontology)
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static QtlPartition |
MetaMain.getQtlPartition(Chromosome chrom,
MetaQtlAnalysis analysis,
java.lang.String trait,
int k,
char tclust)
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