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Q

Qtl - Class in org.metaqtl
A QTL (Quantitative Trait Loci)
Qtl() - Constructor for class org.metaqtl.Qtl
 
QTL - Class in org.thalia.bio.entity
Class Description Here
QTL() - Constructor for class org.thalia.bio.entity.QTL
 
QTL(String, IBioEntity) - Constructor for class org.thalia.bio.entity.QTL
 
QTL - Static variable in interface org.thalia.bio.IBioLocus
 
Qtl.QTLCross - Class in org.metaqtl
This class stores the informations on the cross design used to detect the QTL.
Qtl.QTLCross() - Constructor for class org.metaqtl.Qtl.QTLCross
 
Qtl.QTLProj - Class in org.metaqtl
This class stores the QTL projection properties.
Qtl.QTLProj() - Constructor for class org.metaqtl.Qtl.QTLProj
 
Qtl.QTLStats - Class in org.metaqtl
This class stores the usual statistics for the QTL.
Qtl.QTLStats() - Constructor for class org.metaqtl.Qtl.QTLStats
 
Qtl.QTLSupport - Class in org.metaqtl
This class stores information on the QTL Confidence Interval
Qtl.QTLSupport() - Constructor for class org.metaqtl.Qtl.QTLSupport
 
Qtl.QTLTrait - Class in org.metaqtl
This class stores the trait description of a QTL
Qtl.QTLTrait() - Constructor for class org.metaqtl.Qtl.QTLTrait
 
QTL_CI_FROM - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the QTL confidence interval lower boundary.
QTL_CI_LOD_DECREASE - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the QTL confidence interval LOD decrease.
QTL_CI_TO - Static variable in interface org.metaqtl.IBioLocusProperties
THe key for the QTL confidence interval upper boundary.
QTL_CI_WIDTH - Static variable in class org.metaqtl.graph.MetaGraphPar
 
QTL_CI_WIDTH_CEX - Static variable in class org.metaqtl.graph.MetaGraphPar
 
QTL_CROSS_NAME - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the QTL cross name.
QTL_CROSS_SIZE - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the QTL cross size.
QTL_CROSS_TYPE - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the QTL cross type.
QTL_HSPACE - Static variable in class org.metaqtl.graph.MetaGraphPar
The horizontal space between Qtl shapes.
QTL_NAME_COLOR - Static variable in class org.metaqtl.graph.MetaGraphPar
The color of the QTL names.
QTL_NAME_FONT - Static variable in class org.metaqtl.graph.MetaGraphPar
The font used for the Qtl names.
QTL_NAME_SPACE - Static variable in class org.metaqtl.graph.MetaGraphPar
 
QTL_NAME_VSPACE_CEX - Static variable in class org.metaqtl.graph.MetaGraphPar
The space magnification between the Qtl name and the Qtl confidence interval.
QTL_PALETTE - Static variable in class org.metaqtl.graph.MetaGraphPar
The color palete for the QTL partition.
QTL_PCH_SIZE - Static variable in class org.metaqtl.graph.MetaGraphPar
 
QTL_POS_HEIGHT_CEX - Static variable in class org.metaqtl.graph.MetaGraphPar
 
QTL_POS_WIDTH_CEX - Static variable in class org.metaqtl.graph.MetaGraphPar
 
QTL_PROB_WIDTH - Static variable in class org.metaqtl.graph.MetaGraphPar
 
QTL_PROJ_INTSCALE - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the QTL flanking marker interval projection rate.
QTL_PROJ_MAPSCALE - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the QTL confidence interval projection rate.
QTL_PROJ_ORIGIN - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the map of origin of the QTL.
QTL_PROJ_SHAREFLANKING - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the QTL flanking marker interval order preservation.
QTL_PROJ_SWAPFLANKING - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the QTL flanking marker interval reverse order.
QTL_STATS_ADDITIVE - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the QTL additive effect.
QTL_STATS_DOMINANCE - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the QTL dominance effect.
QTL_STATS_RSQUARE - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the QTL rsquare.
QTL_TICK_WIDTH_CEX - Static variable in class org.metaqtl.graph.MetaGraphPar
The magnification for the tick of the QTL.
QTL_TRAIT_GROUP - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the QTL trait group.
QTL_TRAIT_NAME - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the QTL trait name.
QTL_TRAIT_UNIT - Static variable in interface org.metaqtl.IBioLocusProperties
The key for the QTL trait unit.
QTL_TREE_SCALE - Static variable in class org.metaqtl.graph.MetaGraphPar
 
QTL_TREE_SPACE - Static variable in class org.metaqtl.graph.MetaGraphPar
 
QTL_VSPACE - Static variable in class org.metaqtl.graph.MetaGraphPar
The vertical space between Qtl shapes.
QtlAdapter - Class in org.metaqtl.adapter
This class defines some usefull methods to adapt Qtl object into other kinds of objects or the inverse.
QtlAdapter() - Constructor for class org.metaqtl.adapter.QtlAdapter
 
qtlByChrom - Variable in class org.metaqtl.MetaQtlAnalysis
The matrix of qtl by chromosome
qtlCI - Variable in class org.metaqtl.QtlPartition
The Qtl confidence intervals.
QTLClust - Class in org.metaqtl.main
 
QTLClust() - Constructor for class org.metaqtl.main.QTLClust
 
QtlClustAlgorithm - Class in org.metaqtl.algo
This class defines methods to perform a QTL meta-analysis on a genetic map by applying a clustering of QTL based on a gaussian mixture model and the EM-algorihtm.
QtlClustAlgorithm(IBioGenome, IBioOntology) - Constructor for class org.metaqtl.algo.QtlClustAlgorithm
 
QtlClustAlgorithm(IBioGenome, String, IBioOntology) - Constructor for class org.metaqtl.algo.QtlClustAlgorithm
 
QTLClustInfo - Class in org.metaqtl.main
 
QTLClustInfo() - Constructor for class org.metaqtl.main.QTLClustInfo
 
qtlIdx - Variable in class org.metaqtl.MetaQtlResult
The indices of QTL which are implied in the analysis.
QtlLayer - Class in org.metaqtl.graph
 
QtlLayer(double, double) - Constructor for class org.metaqtl.graph.QtlLayer
 
QtlLayerBuffer - Class in org.metaqtl.graph
 
QtlLayerBuffer() - Constructor for class org.metaqtl.graph.QtlLayerBuffer
 
QTLLOCUS - Static variable in interface org.thalia.bio.IBioEntityTypes
 
QTLModel - Class in org.metaqtl.main
 
QTLModel() - Constructor for class org.metaqtl.main.QTLModel
 
qtlNames - Variable in class org.metaqtl.QtlPartition
The qtl names
qtlPart - Variable in class org.metaqtl.graph.ChromGraph
The Qtl partition
QtlPartition - Class in org.metaqtl
 
QtlPartition() - Constructor for class org.metaqtl.QtlPartition
 
QtlPartitionAdapter - Class in org.metaqtl.adapter
This class defines some methods to adapt complient objects into a QtlPartition object.
QtlPartitionAdapter() - Constructor for class org.metaqtl.adapter.QtlPartitionAdapter
 
QtlPartitionLayer - Class in org.metaqtl.graph
 
QtlPartitionLayer(double, double) - Constructor for class org.metaqtl.graph.QtlPartitionLayer
 
qtlPos - Variable in class org.metaqtl.QtlPartition
The Qtl positions
QTLProj - Class in org.metaqtl.main
 
QTLProj() - Constructor for class org.metaqtl.main.QTLProj
 
QtlProjAlgorithm - Class in org.metaqtl.algo
This class defines some methods to project QTL positions from a genetic map to another.
QtlProjAlgorithm(IBioGenome[], IBioGenome, IBioLocus[]) - Constructor for class org.metaqtl.algo.QtlProjAlgorithm
Creates a new instance of QtlProjAlgorithm for the given configuration of projection.
qtls - Variable in class org.metaqtl.Chromosome
The QTLs located on this chromosome.
QtlShape - Class in org.metaqtl.graph
 
QtlShape() - Constructor for class org.metaqtl.graph.QtlShape
 
qtlShapes - Variable in class org.metaqtl.graph.QtlLayer
The Qtl shapes.
QTLTree - Class in org.metaqtl.main
 
QTLTree() - Constructor for class org.metaqtl.main.QTLTree
 
QtlTreeAlgorithm - Class in org.metaqtl.algo
This class defines methods to perform agglomerative hierarchical QTL clustering.
QtlTreeAlgorithm(IBioGenome, IBioOntology) - Constructor for class org.metaqtl.algo.QtlTreeAlgorithm
 
QtlTreeLayer - Class in org.metaqtl.graph
 
QtlTreeLayer(double, double) - Constructor for class org.metaqtl.graph.QtlTreeLayer
 
QtlUnit - Class in org.metaqtl.graph
 
QtlUnit() - Constructor for class org.metaqtl.graph.QtlUnit
 

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