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2.1.3 Genetic Map Table

The genetic linkage map database is simply organized as a set of plain text files each representing a single genetic linkage map. The link between the experiment table and the genetic map files is done by using the same stem file name than the name of the mapping experiment declared in the column map of experiment table. For example the genetic linkage map related to the mapping experiments exp1 will be stored in a file named exp1.map. Here a genetic linkage map is represented by a table with the following required fields:

For example, the genetic linkage map file for the mapping experiments exp1 would be

     group	type	locus	position
     1	M	lgm0392	0
     1	M	bnlg1178	47.7
     1	M	ts2	102.7
     1	M	bnlg1884	137.5
     1	M	lgm1234	179.3
     1	M	lgm1465	293.2
     2	M	bnlg1092	0
     2	M	bnlg1017	26.8
     2	M	lgm0701	37.4
     2	M	lgm0653	165
     2	M	bnlg1520	190.8
     2	M	dupssr32	218.1
     3	M	bnlg1904	0
     3	M	bnlg1035	36.6
     3	M	bnlg1063	63.1
     3	M	bnlg1182	140.2
     3	M	dupssr8b	161.2