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Qtl
- Class in
org.metaqtl
A QTL (Quantitative Trait Loci)
Qtl()
- Constructor for class org.metaqtl.
Qtl
QTL
- Class in
org.thalia.bio.entity
Class Description Here
QTL()
- Constructor for class org.thalia.bio.entity.
QTL
QTL(String, IBioEntity)
- Constructor for class org.thalia.bio.entity.
QTL
QTL
- Static variable in interface org.thalia.bio.
IBioLocus
Qtl.QTLCross
- Class in
org.metaqtl
This class stores the informations on the cross design used to detect the QTL.
Qtl.QTLCross()
- Constructor for class org.metaqtl.
Qtl.QTLCross
Qtl.QTLProj
- Class in
org.metaqtl
This class stores the QTL projection properties.
Qtl.QTLProj()
- Constructor for class org.metaqtl.
Qtl.QTLProj
Qtl.QTLStats
- Class in
org.metaqtl
This class stores the usual statistics for the QTL.
Qtl.QTLStats()
- Constructor for class org.metaqtl.
Qtl.QTLStats
Qtl.QTLSupport
- Class in
org.metaqtl
This class stores information on the QTL Confidence Interval
Qtl.QTLSupport()
- Constructor for class org.metaqtl.
Qtl.QTLSupport
Qtl.QTLTrait
- Class in
org.metaqtl
This class stores the trait description of a QTL
Qtl.QTLTrait()
- Constructor for class org.metaqtl.
Qtl.QTLTrait
QTL_CI_FROM
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the QTL confidence interval lower boundary.
QTL_CI_LOD_DECREASE
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the QTL confidence interval LOD decrease.
QTL_CI_TO
- Static variable in interface org.metaqtl.
IBioLocusProperties
THe key for the QTL confidence interval upper boundary.
QTL_CI_WIDTH
- Static variable in class org.metaqtl.graph.
MetaGraphPar
QTL_CI_WIDTH_CEX
- Static variable in class org.metaqtl.graph.
MetaGraphPar
QTL_CROSS_NAME
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the QTL cross name.
QTL_CROSS_SIZE
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the QTL cross size.
QTL_CROSS_TYPE
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the QTL cross type.
QTL_HSPACE
- Static variable in class org.metaqtl.graph.
MetaGraphPar
The horizontal space between Qtl shapes.
QTL_NAME_COLOR
- Static variable in class org.metaqtl.graph.
MetaGraphPar
The color of the QTL names.
QTL_NAME_FONT
- Static variable in class org.metaqtl.graph.
MetaGraphPar
The font used for the Qtl names.
QTL_NAME_SPACE
- Static variable in class org.metaqtl.graph.
MetaGraphPar
QTL_NAME_VSPACE_CEX
- Static variable in class org.metaqtl.graph.
MetaGraphPar
The space magnification between the Qtl name and the Qtl confidence interval.
QTL_PALETTE
- Static variable in class org.metaqtl.graph.
MetaGraphPar
The color palete for the QTL partition.
QTL_PCH_SIZE
- Static variable in class org.metaqtl.graph.
MetaGraphPar
QTL_POS_HEIGHT_CEX
- Static variable in class org.metaqtl.graph.
MetaGraphPar
QTL_POS_WIDTH_CEX
- Static variable in class org.metaqtl.graph.
MetaGraphPar
QTL_PROB_WIDTH
- Static variable in class org.metaqtl.graph.
MetaGraphPar
QTL_PROJ_INTSCALE
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the QTL flanking marker interval projection rate.
QTL_PROJ_MAPSCALE
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the QTL confidence interval projection rate.
QTL_PROJ_ORIGIN
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the map of origin of the QTL.
QTL_PROJ_SHAREFLANKING
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the QTL flanking marker interval order preservation.
QTL_PROJ_SWAPFLANKING
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the QTL flanking marker interval reverse order.
QTL_STATS_ADDITIVE
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the QTL additive effect.
QTL_STATS_DOMINANCE
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the QTL dominance effect.
QTL_STATS_RSQUARE
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the QTL rsquare.
QTL_TICK_WIDTH_CEX
- Static variable in class org.metaqtl.graph.
MetaGraphPar
The magnification for the tick of the QTL.
QTL_TRAIT_GROUP
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the QTL trait group.
QTL_TRAIT_NAME
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the QTL trait name.
QTL_TRAIT_UNIT
- Static variable in interface org.metaqtl.
IBioLocusProperties
The key for the QTL trait unit.
QTL_TREE_SCALE
- Static variable in class org.metaqtl.graph.
MetaGraphPar
QTL_TREE_SPACE
- Static variable in class org.metaqtl.graph.
MetaGraphPar
QTL_VSPACE
- Static variable in class org.metaqtl.graph.
MetaGraphPar
The vertical space between Qtl shapes.
QtlAdapter
- Class in
org.metaqtl.adapter
This class defines some usefull methods to adapt
Qtl
object into other kinds of objects or the inverse.
QtlAdapter()
- Constructor for class org.metaqtl.adapter.
QtlAdapter
qtlByChrom
- Variable in class org.metaqtl.
MetaQtlAnalysis
The matrix of qtl by chromosome
qtlCI
- Variable in class org.metaqtl.
QtlPartition
The Qtl confidence intervals.
QTLClust
- Class in
org.metaqtl.main
QTLClust()
- Constructor for class org.metaqtl.main.
QTLClust
QtlClustAlgorithm
- Class in
org.metaqtl.algo
This class defines methods to perform a QTL meta-analysis on a genetic map by applying a clustering of QTL based on a gaussian mixture model and the EM-algorihtm.
QtlClustAlgorithm(IBioGenome, IBioOntology)
- Constructor for class org.metaqtl.algo.
QtlClustAlgorithm
QtlClustAlgorithm(IBioGenome, String, IBioOntology)
- Constructor for class org.metaqtl.algo.
QtlClustAlgorithm
QTLClustInfo
- Class in
org.metaqtl.main
QTLClustInfo()
- Constructor for class org.metaqtl.main.
QTLClustInfo
qtlIdx
- Variable in class org.metaqtl.
MetaQtlResult
The indices of QTL which are implied in the analysis.
QtlLayer
- Class in
org.metaqtl.graph
QtlLayer(double, double)
- Constructor for class org.metaqtl.graph.
QtlLayer
QtlLayerBuffer
- Class in
org.metaqtl.graph
QtlLayerBuffer()
- Constructor for class org.metaqtl.graph.
QtlLayerBuffer
QTLLOCUS
- Static variable in interface org.thalia.bio.
IBioEntityTypes
QTLModel
- Class in
org.metaqtl.main
QTLModel()
- Constructor for class org.metaqtl.main.
QTLModel
qtlNames
- Variable in class org.metaqtl.
QtlPartition
The qtl names
qtlPart
- Variable in class org.metaqtl.graph.
ChromGraph
The Qtl partition
QtlPartition
- Class in
org.metaqtl
QtlPartition()
- Constructor for class org.metaqtl.
QtlPartition
QtlPartitionAdapter
- Class in
org.metaqtl.adapter
This class defines some methods to adapt complient objects into a
QtlPartition
object.
QtlPartitionAdapter()
- Constructor for class org.metaqtl.adapter.
QtlPartitionAdapter
QtlPartitionLayer
- Class in
org.metaqtl.graph
QtlPartitionLayer(double, double)
- Constructor for class org.metaqtl.graph.
QtlPartitionLayer
qtlPos
- Variable in class org.metaqtl.
QtlPartition
The Qtl positions
QTLProj
- Class in
org.metaqtl.main
QTLProj()
- Constructor for class org.metaqtl.main.
QTLProj
QtlProjAlgorithm
- Class in
org.metaqtl.algo
This class defines some methods to project QTL positions from a genetic map to another.
QtlProjAlgorithm(IBioGenome[], IBioGenome, IBioLocus[])
- Constructor for class org.metaqtl.algo.
QtlProjAlgorithm
Creates a new instance of
QtlProjAlgorithm
for the given configuration of projection.
qtls
- Variable in class org.metaqtl.
Chromosome
The QTLs located on this chromosome.
QtlShape
- Class in
org.metaqtl.graph
QtlShape()
- Constructor for class org.metaqtl.graph.
QtlShape
qtlShapes
- Variable in class org.metaqtl.graph.
QtlLayer
The Qtl shapes.
QTLTree
- Class in
org.metaqtl.main
QTLTree()
- Constructor for class org.metaqtl.main.
QTLTree
QtlTreeAlgorithm
- Class in
org.metaqtl.algo
This class defines methods to perform agglomerative hierarchical QTL clustering.
QtlTreeAlgorithm(IBioGenome, IBioOntology)
- Constructor for class org.metaqtl.algo.
QtlTreeAlgorithm
QtlTreeLayer
- Class in
org.metaqtl.graph
QtlTreeLayer(double, double)
- Constructor for class org.metaqtl.graph.
QtlTreeLayer
QtlUnit
- Class in
org.metaqtl.graph
QtlUnit()
- Constructor for class org.metaqtl.graph.
QtlUnit
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