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E
E
- Variable in class org.metaqtl.util.
OffspringManager.HaldaneWaddingtonProportion
E_coeff
- Static variable in class org.metaqtl.util.
OffspringManager.HaldaneWaddingtonProportion
edist
- Variable in class org.metaqtl.
EMResult
The euclidean distance between the current and the previous vector of parameters (mu + pi)
EM_CONTINUE
- Static variable in class org.metaqtl.algo.
EMAlgorithm
The EM convergence status : continue
EM_ERR
- Static variable in class org.metaqtl.algo.
EMAlgorithm
The EM convergence tolerance.
EM_FAILURE
- Static variable in class org.metaqtl.algo.
EMAlgorithm
The EM convergence status : failure
EM_ITER_MAX
- Static variable in class org.metaqtl.algo.
EMAlgorithm
The EM maximum number of iterations.
EM_MIN_DISTANCE
- Static variable in class org.metaqtl.algo.
EMAlgorithm
The minimal mahalanobis distance between components.
EM_OK
- Static variable in class org.metaqtl.algo.
EMAlgorithm
The EM convergence status : success
EM_START
- Static variable in class org.metaqtl.algo.
EMAlgorithm
The number of replicates for a run of the EM-algorithm.
EMAlgorithm
- Class in
org.metaqtl.algo
This class defines methods to perform the EM-algorithm for univariate mixture of gaussians with known variances.
EMAlgorithm()
- Constructor for class org.metaqtl.algo.
EMAlgorithm
EMCriteria
- Class in
org.metaqtl
EMCriteria()
- Constructor for class org.metaqtl.
EMCriteria
EMPTY_BIOALLELE_ARRAY
- Static variable in interface org.thalia.bio.entity.
IBioConstants
EMPTY_BIOENTITY_ARRAY
- Static variable in interface org.thalia.bio.entity.
IBioConstants
EMPTY_BIOLGROUP_ARRAY
- Static variable in interface org.thalia.bio.entity.
IBioConstants
EMPTY_BIOLOCUS_ARRAY
- Static variable in interface org.thalia.bio.entity.
IBioConstants
emRate(EMResult, double[], double[])
- Static method in class org.metaqtl.algo.
EMAlgorithm
Compute the euclidean distance between the new parameters and the old ones to obtain a simple approximation of the EM convergence rate.
EMResult
- Class in
org.metaqtl
EMResult()
- Constructor for class org.metaqtl.
EMResult
EMResult(int, int)
- Constructor for class org.metaqtl.
EMResult
EMResultFactory
- Class in
org.metaqtl.factory
EMResultFactory()
- Constructor for class org.metaqtl.factory.
EMResultFactory
entities
- Variable in class org.thalia.bio.entity.bean.
BioEntityCollectionBean
eStep(double[], double[], EMResult)
- Static method in class org.metaqtl.algo.
EMAlgorithm
The Expectation step : it just consists in updating the Z matrix, i.e the cluster membership probabilities.
ESTIMATED
- Static variable in interface org.thalia.bio.util.
ILGroupPosition
EstimatedLocusPosition
- Class in
org.thalia.bio.util
Class Description Here
EstimatedLocusPosition(double, double)
- Constructor for class org.thalia.bio.util.
EstimatedLocusPosition
extractLocus(IBioLocus[], int)
- Static method in class org.thalia.bio.util.
BioLocusTypes
This returns extracts in the given array of loci the locus which type matches the given one.
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