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java.lang.Objectorg.metaqtl.util.OffspringManager
public final class OffspringManager
Class Description Here
Nested Class Summary | |
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class |
OffspringManager.HaldaneWaddingtonProportion
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Constructor Summary | |
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OffspringManager()
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Method Summary | |
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static double |
fisherVariance(double r,
int size,
int type,
int gen)
Returns the inverse of the Fisher Information depending on the type of cross for a given recombination rate and a given population size. |
static double |
r2R(double r,
int type,
int gen)
This routine returns the recombination rate r for a given value of the propertion of recombibant genotypes R according to the cross design. |
static double |
R2r(double R,
int type,
int gen)
This routine returns the recombination rate r for a given value of the propertion of recombibant genotypes R according to the cross design. |
static double |
selfingIndividualInformation(OffspringManager.HaldaneWaddingtonProportion p)
This routine returns the individual means amount of information for the given generation propertions for a self-fertilization design. |
static void |
selfingRecurrence(OffspringManager.HaldaneWaddingtonProportion p,
double r)
Given the current proportion C,D,E,F and G and the recombination rate r this routine computes the next generation proportions following the recurrence formula of Haldane and Waddington, 1931, Inbreeding and linkage, Genetics 16:357-374 (see section self-fertilization p358). |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public OffspringManager()
Method Detail |
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public static double fisherVariance(double r, int size, int type, int gen)
r
- the recombination rate estimate.size
- type
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public static void selfingRecurrence(OffspringManager.HaldaneWaddingtonProportion p, double r)
proportion
- public static double selfingIndividualInformation(OffspringManager.HaldaneWaddingtonProportion p)
p
- public static double R2r(double R, int type, int gen)
R
- the proportion of recombinant genotypes.size
- the population size.type
- the type of pedigree.gen
- the number of random mating generations (only for IRISi and IRISe).
public static double r2R(double r, int type, int gen)
R
- the proportion of recombinant genotypes.size
- the population size.type
- the type of pedigree.gen
- the number of random mating generations (only for IRISi and IRISe).
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