org.metaqtl
Interface IMetaQtlConstants


public interface IMetaQtlConstants

This interface defines some global constants which are used by several classes of the package.


Field Summary
static int CI_MISS_IGNORE
          MSD Mode : ignore QTL with missing standard deviation.
static int CI_MISS_IMPUTATION
          MSD Mode : replace missing standard deviation by the mean of the observed ones.
static int CI_MODE_AVAILABLE
          SD Mode : use the available information to compute the standard deviation.
static int CI_MODE_LOD
          SD Mode : use only the confidence interval information if defined to compute the standard deviation.
static int CI_MODE_MAXIMAL
          SD Mode : compute the standard deviation using both lod support and rsquare information (if available) and then choose the maximal standard-deviation.
static int CI_MODE_RSQUARE
          SD Mode : use only the rsquare information if defined to compute the standard deviation.
static int MAPPING_FUNCTION_HALDANE
          Integer code for haldane mapping function
static int MAPPING_FUNCTION_KOSAMBI
          Integer code for kosambi mapping function
static int MAPPING_FUNCTION_UNKNOWN
          Integer code for not defined mapping function
static int MAPPING_UNIT_CM
          Integer code for centi morgan mapping unit
static int MAPPING_UNIT_M
          Integer code for morgan mapping unit
static int MAPPING_UNIT_UNKNOWN
          Integer code for unknown mapping unit
static double TINY_MAPPING_DISTANCE
          The minimal distance in morgan
static double TINY_MAPPING_VARIANCE
          the minimal variance in morgan
static java.lang.String VERSION
          The version of the package.
 

Field Detail

VERSION

static final java.lang.String VERSION
The version of the package.

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Constant Field Values

MAPPING_FUNCTION_UNKNOWN

static final int MAPPING_FUNCTION_UNKNOWN
Integer code for not defined mapping function

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MAPPING_FUNCTION_HALDANE

static final int MAPPING_FUNCTION_HALDANE
Integer code for haldane mapping function

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MAPPING_FUNCTION_KOSAMBI

static final int MAPPING_FUNCTION_KOSAMBI
Integer code for kosambi mapping function

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MAPPING_UNIT_UNKNOWN

static final int MAPPING_UNIT_UNKNOWN
Integer code for unknown mapping unit

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MAPPING_UNIT_M

static final int MAPPING_UNIT_M
Integer code for morgan mapping unit

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MAPPING_UNIT_CM

static final int MAPPING_UNIT_CM
Integer code for centi morgan mapping unit

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TINY_MAPPING_DISTANCE

static final double TINY_MAPPING_DISTANCE
The minimal distance in morgan

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TINY_MAPPING_VARIANCE

static final double TINY_MAPPING_VARIANCE
the minimal variance in morgan

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CI_MODE_AVAILABLE

static final int CI_MODE_AVAILABLE
SD Mode : use the available information to compute the standard deviation.

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Constant Field Values

CI_MODE_LOD

static final int CI_MODE_LOD
SD Mode : use only the confidence interval information if defined to compute the standard deviation.

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CI_MODE_RSQUARE

static final int CI_MODE_RSQUARE
SD Mode : use only the rsquare information if defined to compute the standard deviation.

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CI_MODE_MAXIMAL

static final int CI_MODE_MAXIMAL
SD Mode : compute the standard deviation using both lod support and rsquare information (if available) and then choose the maximal standard-deviation.

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CI_MISS_IMPUTATION

static final int CI_MISS_IMPUTATION
MSD Mode : replace missing standard deviation by the mean of the observed ones.

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CI_MISS_IGNORE

static final int CI_MISS_IGNORE
MSD Mode : ignore QTL with missing standard deviation.

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Constant Field Values