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Packages that use Qtl | |
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org.metaqtl | |
org.metaqtl.adapter |
Uses of Qtl in org.metaqtl |
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Fields in org.metaqtl declared as Qtl | |
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Qtl[] |
Chromosome.mqtls
The meta Qtls on this chromosome. |
Qtl[][] |
MetaQtlAnalysis.qtlByChrom
The matrix of qtl by chromosome |
Qtl[] |
Chromosome.qtls
The QTLs located on this chromosome. |
protected Qtl[] |
MetaQtlData.qtls
The QTL. |
Methods in org.metaqtl that return Qtl | |
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Qtl |
Qtl.getCopy()
Returns a copy of the QTL. |
Qtl[] |
MetaQtlResult.getMetaQtl(int k)
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Qtl[] |
MetaQtlAnalysis.getMetaQtl(java.lang.String chrom,
java.lang.String trait,
int k)
Returns the meta Qtl for the given chromosome indice cidx , the given trait name trait
and the given number of clusters k . |
Qtl[] |
Chromosome.getMetaQtls()
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Qtl |
MetaQtlData.getQtl(int i,
int j)
Returns the j^th QTL in the i^th cluster. |
Qtl[] |
Chromosome.getQtls()
This method returns a copy of the QTL located on thic chromosome. |
Methods in org.metaqtl with parameters of type Qtl | |
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void |
Chromosome.attachQtl(Qtl[] qtls)
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double |
Chromosome.getQTLInMrkIntProb(int mrkIdxL,
int mrkIdxR,
Qtl qtl)
This methods returns the probability that the QTL be inside the marker interval with the given right and left marker indices and the given QTL. |
void |
Chromosome.setMetaQtls(Qtl[] metaQtl)
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Constructors in org.metaqtl with parameters of type Qtl | |
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MetaQtlData(Qtl[] qtls)
Create a new instance of MetaQtlData which
will represent the given array of Qtl . |
Uses of Qtl in org.metaqtl.adapter |
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Methods in org.metaqtl.adapter that return Qtl | |
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static Qtl[] |
QtlAdapter.adapt(EMResult result)
From a result of a EM clustering returns the mixture components as an array of Qtl. |
static Qtl |
QtlAdapter.toQTL(IBioLocus locus)
This method converts an object which class implements the IBioLocus |
Methods in org.metaqtl.adapter with parameters of type Qtl | |
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static QtlPartition |
QtlPartitionAdapter.adapt(MetaQtlResult result,
Qtl[] qtls,
int k)
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static IBioLocus |
QtlAdapter.fromQTL(Qtl qtl)
This method converts a Qtl into an object which class
implements the IBioLocus |
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