Uses of Interface
org.metaqtl.bio.IBioOntology

Packages that use IBioOntology
org.metaqtl   
org.metaqtl.algo   
org.metaqtl.bio.entity   
org.metaqtl.main   
 

Uses of IBioOntology in org.metaqtl
 

Methods in org.metaqtl with parameters of type IBioOntology
 void MetaQtlData.doTraitOntologyClustering(IBioOntology ontology)
          According to the given trait ontology this methods clusterize the QTL in group in such a way that each group represents a trait term in the ontology.
 

Uses of IBioOntology in org.metaqtl.algo
 

Fields in org.metaqtl.algo declared as IBioOntology
protected  IBioOntology ClustAlgorithm.ontology
          The optional trait ontology to use to group Qtl.
 

Constructors in org.metaqtl.algo with parameters of type IBioOntology
ClustAlgorithm(IBioGenome map, IBioOntology ontology)
           
ClustAlgorithm(IBioGenome map, java.lang.String name, IBioOntology ontology)
           
QtlClustAlgorithm(IBioGenome map, IBioOntology ontology)
           
QtlClustAlgorithm(IBioGenome map, java.lang.String chrom, IBioOntology ontology)
           
QtlTreeAlgorithm(IBioGenome map, IBioOntology ontology)
           
 

Uses of IBioOntology in org.metaqtl.bio.entity
 

Classes in org.metaqtl.bio.entity that implement IBioOntology
 class Ontology
           
 

Uses of IBioOntology in org.metaqtl.main
 

Methods in org.metaqtl.main that return IBioOntology
protected static IBioOntology MetaMain.getOntology(java.lang.String ontoF, char format)
           
 

Methods in org.metaqtl.main with parameters of type IBioOntology
static ChromGraph[] MetaMain.getChromGraph(Chromosome[] chroms, boolean withQtl, int modeQtl, IBioOntology ontology, MetaQtlAnalysis treeAnalysis)
           
static QtlPartition MetaMain.getQtlPartition(Chromosome chromosome, IBioOntology ontology)