Uses of Interface
org.metaqtl.bio.IBioEntity

Packages that use IBioEntity
org.metaqtl.bio   
org.metaqtl.bio.entity   
org.metaqtl.bio.entity.adapter   
org.metaqtl.bio.entity.factory   
 

Uses of IBioEntity in org.metaqtl.bio
 

Subinterfaces of IBioEntity in org.metaqtl.bio
 interface IBioAllele
          Class Description Here
 interface IBioCross
          Class Description Here
 interface IBioGenome
           
 interface IBioIndividual
          Class Description Here
 interface IBioLGroup
           
 interface IBioLocus
           
 interface IBioOntology
          This interface defines some rules to handle a ontology.
 interface IBioOntologyTerm
          This class defines a term of an ontology.
 interface IBioPopulation
          Class Description Here
 

Methods in org.metaqtl.bio that return IBioEntity
 IBioEntity IBioEntity.getParent()
          Returns the entity that handles this entity.
 IBioEntity IBioAdapter.toEntity(java.lang.Object obj)
          Convert the given bio entity object into another compliant object.
 

Methods in org.metaqtl.bio with parameters of type IBioEntity
 java.lang.Object IBioAdapter.fromEntity(IBioEntity obj)
          Convert the given compliant object to a bio entity object.
 

Uses of IBioEntity in org.metaqtl.bio.entity
 

Classes in org.metaqtl.bio.entity that implement IBioEntity
 class AlleleContainer
          Class Description Here
 class BioEntity
          Class Description Here
 class BioEntityCollection
          Class Description Here
 class BioEntityContainer
          Class Description Here
 class CrossPopulation
          Class Description Here
 class GeneticMap
          Class Description Here
 class GroupContainer
          Class Description Here
 class Individual
          Class Description Here
 class IndividualContainer
          Class Description Here
 class LGroup
          Class Description Here
 class Locus
           
 class LocusContainer
          Class Description Here
 class Marker
          Class Description Here
 class Ontology
           
 class OntologyTerm
           
 class Population
          Class Description Here
 class QTL
          Class Description Here
 

Fields in org.metaqtl.bio.entity declared as IBioEntity
protected  IBioEntity BioEntity.parent
           
protected  IBioEntity BioEntityCollection.parent
           
 

Methods in org.metaqtl.bio.entity that return IBioEntity
protected  IBioEntity[] BioEntityContainer.entities()
           
protected  IBioEntity BioEntityContainer.getEntity(java.lang.String name)
           
 IBioEntity BioEntity.getParent()
           
 IBioEntity BioEntityCollection.getParent()
           
static IBioEntity BioEntity.newBioEntity(int type)
           
 

Methods in org.metaqtl.bio.entity with parameters of type IBioEntity
protected  void BioEntityContainer.addEntity(IBioEntity entity)
           
static Population Population.newCrossPopulation(int type, java.lang.String name, IBioEntity parent)
           
 

Constructors in org.metaqtl.bio.entity with parameters of type IBioEntity
AlleleContainer(java.lang.String name, IBioEntity parent)
           
BioEntity(java.lang.String name, IBioEntity parent)
           
BioEntityContainer(java.lang.String name, IBioEntity parent)
           
CrossPopulation(java.lang.String name, IBioEntity parent)
           
CrossPopulation(java.lang.String name, IBioEntity parent, int type)
           
GeneticMap(java.lang.String name, IBioEntity parent)
           
GroupContainer(java.lang.String name, IBioEntity parent)
           
Individual(java.lang.String name, IBioEntity parent)
           
IndividualContainer(java.lang.String name, IBioEntity parent)
           
LGroup(java.lang.String name, IBioEntity parent)
           
Locus(java.lang.String name, IBioEntity parent)
           
LocusContainer(java.lang.String name, IBioEntity parent)
           
Marker(java.lang.String name, IBioEntity parent)
           
Population(java.lang.String name, IBioEntity parent)
           
QTL(java.lang.String name, IBioEntity parent)
           
 

Uses of IBioEntity in org.metaqtl.bio.entity.adapter
 

Methods in org.metaqtl.bio.entity.adapter that return IBioEntity
 IBioEntity BioEntityCollectionAdapter.toEntity(java.lang.Object bean)
           
 IBioEntity GeneticMapBeanAdapter.toEntity(java.lang.Object bean)
           
 IBioEntity LGroupBeanAdapter.toEntity(java.lang.Object bean)
           
 IBioEntity LocusBeanAdapter.toEntity(java.lang.Object bean)
           
 IBioEntity OntologyBeanAdapter.toEntity(java.lang.Object obj)
           
 IBioEntity OntologyTermBeanAdapter.toEntity(java.lang.Object obj)
           
 

Methods in org.metaqtl.bio.entity.adapter with parameters of type IBioEntity
 java.lang.Object BioEntityCollectionAdapter.fromEntity(IBioEntity obj)
           
 java.lang.Object GeneticMapBeanAdapter.fromEntity(IBioEntity obj)
           
 java.lang.Object LGroupBeanAdapter.fromEntity(IBioEntity obj)
           
 java.lang.Object LocusBeanAdapter.fromEntity(IBioEntity obj)
           
 java.lang.Object OntologyBeanAdapter.fromEntity(IBioEntity obj)
           
 java.lang.Object OntologyTermBeanAdapter.fromEntity(IBioEntity obj)
           
static void BioEntityAdapter.fromEntity(IBioEntity entity, BioEntityBean bean)
           
static void BioEntityAdapter.toEntity(BioEntityBean bean, IBioEntity entity)
           
 

Uses of IBioEntity in org.metaqtl.bio.entity.factory
 

Methods in org.metaqtl.bio.entity.factory that return IBioEntity
abstract  IBioEntity BioEntityFactory.load(java.io.InputStream stream)
           
 IBioEntity MapChartFactory.load(java.io.InputStream stream)
          TODO (non-Javadoc)
 IBioEntity MapMakerFactory.load(java.io.InputStream stream)
           
 IBioEntity MapRawFactory.load(java.io.InputStream inputStream)
           
 IBioEntity MapTabFactory.load(java.io.InputStream stream)
           
 IBioEntity OntologyTabFactory.load(java.io.InputStream inputStream)
           
 IBioEntity XmlBioEntityFactory.load(java.io.InputStream stream)
           
abstract  IBioEntity BioEntityFactory.load(java.io.Reader reader)
           
 IBioEntity MapChartFactory.load(java.io.Reader reader)
          TODO (non-Javadoc)
 IBioEntity MapMakerFactory.load(java.io.Reader reader)
           
 IBioEntity MapRawFactory.load(java.io.Reader reader)
           
 IBioEntity MapTabFactory.load(java.io.Reader reader)
           
 IBioEntity OntologyTabFactory.load(java.io.Reader reader)
           Term_id : the term identifient.
 IBioEntity XmlBioEntityFactory.load(java.io.Reader reader)
           
 

Methods in org.metaqtl.bio.entity.factory with parameters of type IBioEntity
abstract  void BioEntityFactory.unload(IBioEntity entity, java.io.OutputStream stream)
           
 void MapChartFactory.unload(IBioEntity obj, java.io.OutputStream stream)
          TODO (non-Javadoc)
 void MapMakerFactory.unload(IBioEntity entity, java.io.OutputStream stream)
           
 void MapRawFactory.unload(IBioEntity entity, java.io.OutputStream stream)
           
 void MapTabFactory.unload(IBioEntity entity, java.io.OutputStream stream)
           
 void OntologyTabFactory.unload(IBioEntity entity, java.io.OutputStream stream)
           
 void XmlBioEntityFactory.unload(IBioEntity obj, java.io.OutputStream stream)
           
abstract  void BioEntityFactory.unload(IBioEntity entity, java.io.Writer writer)
           
 void MapChartFactory.unload(IBioEntity obj, java.io.Writer w)
          TODO (non-Javadoc)
 void MapMakerFactory.unload(IBioEntity obj, java.io.Writer w)
           
 void MapRawFactory.unload(IBioEntity entity, java.io.Writer writer)
           
 void MapTabFactory.unload(IBioEntity obj, java.io.Writer writer)
           
 void OntologyTabFactory.unload(IBioEntity entity, java.io.Writer writer)
           
 void XmlBioEntityFactory.unload(IBioEntity obj, java.io.Writer writer)