Uses of Class
org.metaqtl.Qtl

Packages that use Qtl
org.metaqtl   
org.metaqtl.adapter   
 

Uses of Qtl in org.metaqtl
 

Fields in org.metaqtl declared as Qtl
 Qtl[] Chromosome.mqtls
          The meta Qtls on this chromosome.
 Qtl[][] MetaQtlAnalysis.qtlByChrom
          The matrix of qtl by chromosome
 Qtl[] Chromosome.qtls
          The QTLs located on this chromosome.
protected  Qtl[] MetaQtlData.qtls
          The QTL.
 

Methods in org.metaqtl that return Qtl
 Qtl Qtl.getCopy()
          Returns a copy of the QTL.
 Qtl[] MetaQtlResult.getMetaQtl(int k)
           
 Qtl[] MetaQtlAnalysis.getMetaQtl(java.lang.String chrom, java.lang.String trait, int k)
          Returns the meta Qtl for the given chromosome indice cidx, the given trait name trait and the given number of clusters k.
 Qtl[] Chromosome.getMetaQtls()
           
 Qtl MetaQtlData.getQtl(int i, int j)
          Returns the j^th QTL in the i^th cluster.
 Qtl[] Chromosome.getQtls()
          This method returns a copy of the QTL located on thic chromosome.
 

Methods in org.metaqtl with parameters of type Qtl
 void Chromosome.attachQtl(Qtl[] qtls)
           
 double Chromosome.getQTLInMrkIntProb(int mrkIdxL, int mrkIdxR, Qtl qtl)
          This methods returns the probability that the QTL be inside the marker interval with the given right and left marker indices and the given QTL.
 void Chromosome.setMetaQtls(Qtl[] metaQtl)
           
 

Constructors in org.metaqtl with parameters of type Qtl
MetaQtlData(Qtl[] qtls)
          Create a new instance of MetaQtlData which will represent the given array of Qtl.
 

Uses of Qtl in org.metaqtl.adapter
 

Methods in org.metaqtl.adapter that return Qtl
static Qtl[] QtlAdapter.adapt(EMResult result)
          From a result of a EM clustering returns the mixture components as an array of Qtl.
static Qtl QtlAdapter.toQTL(IBioLocus locus)
          This method converts an object which class implements the IBioLocus interface into a Qtl.
 

Methods in org.metaqtl.adapter with parameters of type Qtl
static QtlPartition QtlPartitionAdapter.adapt(MetaQtlResult result, Qtl[] qtls, int k)
           
static IBioLocus QtlAdapter.fromQTL(Qtl qtl)
          This method converts a Qtl into an object which class implements the IBioLocus interface.