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public interface IMetaQtlConstants
This interface defines some global constants which are used by several classes of the package.
Field Summary | |
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static int |
CI_MISS_IGNORE
MSD Mode : ignore QTL with missing standard deviation. |
static int |
CI_MISS_IMPUTATION
MSD Mode : replace missing standard deviation by the mean of the observed ones. |
static int |
CI_MODE_AVAILABLE
SD Mode : use the available information to compute the standard deviation. |
static int |
CI_MODE_LOD
SD Mode : use only the confidence interval information if defined to compute the standard deviation. |
static int |
CI_MODE_MAXIMAL
SD Mode : compute the standard deviation using both lod support and rsquare information (if available) and then choose the maximal standard-deviation. |
static int |
CI_MODE_RSQUARE
SD Mode : use only the rsquare information if defined to compute the standard deviation. |
static int |
MAPPING_FUNCTION_HALDANE
Integer code for haldane mapping function |
static int |
MAPPING_FUNCTION_KOSAMBI
Integer code for kosambi mapping function |
static int |
MAPPING_FUNCTION_UNKNOWN
Integer code for not defined mapping function |
static int |
MAPPING_UNIT_CM
Integer code for centi morgan mapping unit |
static int |
MAPPING_UNIT_M
Integer code for morgan mapping unit |
static int |
MAPPING_UNIT_UNKNOWN
Integer code for unknown mapping unit |
static double |
TINY_MAPPING_DISTANCE
The minimal distance in morgan |
static double |
TINY_MAPPING_VARIANCE
the minimal variance in morgan |
static java.lang.String |
VERSION
The version of the package. |
Field Detail |
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static final java.lang.String VERSION
static final int MAPPING_FUNCTION_UNKNOWN
static final int MAPPING_FUNCTION_HALDANE
static final int MAPPING_FUNCTION_KOSAMBI
static final int MAPPING_UNIT_UNKNOWN
static final int MAPPING_UNIT_M
static final int MAPPING_UNIT_CM
static final double TINY_MAPPING_DISTANCE
static final double TINY_MAPPING_VARIANCE
static final int CI_MODE_AVAILABLE
static final int CI_MODE_LOD
static final int CI_MODE_RSQUARE
static final int CI_MODE_MAXIMAL
static final int CI_MISS_IMPUTATION
static final int CI_MISS_IGNORE
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