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L

label - Variable in class org.metaqtl.TreeNode
The label of the cluster
Layer - Class in org.metaqtl.graph
 
Layer(double, double) - Constructor for class org.metaqtl.graph.Layer
Creates a layer without any width and heigth constraints which upper left corner will be located at the point (x,y).
LAYER_HSPACE - Static variable in class org.metaqtl.graph.MetaGraphPar
The horizontal space between layers.
LAYER_VSPACE - Static variable in class org.metaqtl.graph.MetaGraphPar
The vertical space between layers.
leaf - Variable in class org.metaqtl.TreeNode
The status of the node.
LEFT_LABEL - Static variable in class org.metaqtl.graph.ChromLayer
 
LEFT_LABEL - Static variable in class org.metaqtl.graph.ChromShape
 
LEGEND_BOX_CEX - Static variable in class org.metaqtl.graph.MetaGraphPar
 
LEGEND_FONT - Static variable in class org.metaqtl.graph.MetaGraphPar
 
LEGEND_GRAD_HEIGHT - Static variable in class org.metaqtl.graph.MetaGraphPar
 
LEGEND_GRAD_WIDTH - Static variable in class org.metaqtl.graph.MetaGraphPar
 
LEGEND_HSPACE - Static variable in class org.metaqtl.graph.MetaGraphPar
 
LEGEND_PART_HEIGHT - Static variable in class org.metaqtl.graph.MetaGraphPar
 
LEGEND_PART_WIDTH - Static variable in class org.metaqtl.graph.MetaGraphPar
 
LEGEND_SCALE_UNIT - Static variable in class org.metaqtl.graph.MetaGraphPar
 
legendLayer - Variable in class org.metaqtl.graph.MetaGraph
 
LGroup - Class in org.thalia.bio.entity
Class Description Here
LGroup() - Constructor for class org.thalia.bio.entity.LGroup
 
LGroup(String, IBioEntity) - Constructor for class org.thalia.bio.entity.LGroup
 
LGROUP - Static variable in interface org.thalia.bio.IBioEntityTypes
The integer code for Linkage Group entity
LGroupBean - Class in org.thalia.bio.entity.bean
Class Description Here
LGroupBean() - Constructor for class org.thalia.bio.entity.bean.LGroupBean
 
LGroupBeanAdapter - Class in org.thalia.bio.entity.adapter
Class Description Here
LGroupBeanAdapter() - Constructor for class org.thalia.bio.entity.adapter.LGroupBeanAdapter
 
LGroupPosition - Class in org.thalia.bio.util
Class Description Here
LGroupPosition(double) - Constructor for class org.thalia.bio.util.LGroupPosition
 
LGroupPosition(double, double) - Constructor for class org.thalia.bio.util.LGroupPosition
 
load(Reader) - Method in class org.thalia.bio.entity.factory.BioEntityFactory
 
load(InputStream) - Method in class org.thalia.bio.entity.factory.BioEntityFactory
 
load(Reader) - Method in class org.thalia.bio.entity.factory.MapChartFactory
TODO (non-Javadoc)
load(InputStream) - Method in class org.thalia.bio.entity.factory.MapChartFactory
TODO (non-Javadoc)
load(Reader) - Method in class org.thalia.bio.entity.factory.MapMakerFactory
 
load(InputStream) - Method in class org.thalia.bio.entity.factory.MapMakerFactory
 
load(InputStream) - Method in class org.thalia.bio.entity.factory.MapRawFactory
 
load(Reader) - Method in class org.thalia.bio.entity.factory.MapRawFactory
 
load(Reader) - Method in class org.thalia.bio.entity.factory.MapTabFactory
 
load(InputStream) - Method in class org.thalia.bio.entity.factory.MapTabFactory
 
load(InputStream) - Method in class org.thalia.bio.entity.factory.OntologyTabFactory
 
load(Reader) - Method in class org.thalia.bio.entity.factory.OntologyTabFactory
Term_id : the term identifient.
load(InputStream) - Method in class org.thalia.bio.entity.factory.XmlBioEntityFactory
 
load(Reader) - Method in class org.thalia.bio.entity.factory.XmlBioEntityFactory
 
loci() - Method in class org.thalia.bio.entity.LocusContainer
 
loci() - Method in interface org.thalia.bio.IBioLGroup
 
locus - Variable in class org.thalia.bio.entity.bean.LGroupBean
 
Locus - Class in org.thalia.bio.entity
 
Locus() - Constructor for class org.thalia.bio.entity.Locus
 
Locus(String, IBioEntity) - Constructor for class org.thalia.bio.entity.Locus
 
LOCUS - Static variable in interface org.thalia.bio.IBioEntityTypes
The integer code for Locus entity
LocusBean - Class in org.thalia.bio.entity.bean
Class Description Here
LocusBean() - Constructor for class org.thalia.bio.entity.bean.LocusBean
 
LocusBeanAdapter - Class in org.thalia.bio.entity.adapter
Class Description Here
LocusBeanAdapter() - Constructor for class org.thalia.bio.entity.adapter.LocusBeanAdapter
 
LocusContainer - Class in org.thalia.bio.entity
Class Description Here
LocusContainer() - Constructor for class org.thalia.bio.entity.LocusContainer
 
LocusContainer(String, IBioEntity) - Constructor for class org.thalia.bio.entity.LocusContainer
 
locusNames - Variable in class org.metaqtl.ChromCluster
Ths locus name index table
LocusPositionComparator - Class in org.thalia.bio.util
Class Description Here
LocusProperties - Class in org.metaqtl.util
 
LocusProperties() - Constructor for class org.metaqtl.util.LocusProperties
 
lod - Variable in class org.metaqtl.Qtl.QTLStats
The lod score of the QTL.
lodDecrease - Variable in class org.metaqtl.Qtl.QTLSupport
The value of the LOD decrease used to obtain the CI.
longForm() - Method in class org.metaqtl.main.CmdLineParser.Option
 

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