Package org.metaqtl.main

Class Summary
A2Xml  
CmdLineParser Largely GNU-compatible command-line options parser.
CmdLineParser.Option Representation of a command-line option
CmdLineParser.Option.BooleanOption  
CmdLineParser.Option.DoubleOption An option that expects a floating-point value
CmdLineParser.Option.IntegerOption An option that expects an integer value
CmdLineParser.Option.LongOption An option that expects a long integer value
CmdLineParser.Option.StringOption An option that expects a string value
ConsMap  
InfoMap  
MapView  
MetaDB  
MetaMain  
MMapView  
MQTLView  
QTLClust  
QTLClustInfo  
QTLModel  
QTLProj  
QTLTree  
Xml2A  
 

Exception Summary
CmdLineParser.IllegalOptionValueException Thrown when an illegal or missing value is given by the user for an option that takes a value.
CmdLineParser.NotFlagException Thrown when the parsed commandline contains multiple concatenated short options, such as -abcd, where one or more requires a value.
CmdLineParser.OptionException Base class for exceptions that may be thrown when options are parsed
CmdLineParser.UnknownOptionException Thrown when the parsed command-line contains an option that is not recognised.
CmdLineParser.UnknownSuboptionException Thrown when the parsed commandline contains multiple concatenated short options, such as -abcd, where one is unknown.