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Chromosome
with the given cross design
and the given mapping context.
Chromosome
which represents
the chromosomes of the input mpe.
MetaMap
object into
an object which is consistent with the IBioGenome
interface.
IBioLocus interface
into a Qtl
.
- toString() -
Method in class org.metaqtl.Chromosome
-
- toString() -
Method in class org.metaqtl.MultiFitResult
-
- toString() -
Method in class org.thalia.bio.entity.LGroup
-
- totd -
Variable in class org.metaqtl.Chromosome
- The total distance of the chromosome.
- trait -
Variable in class org.metaqtl.MetaQtlResult
- The name of the trait.
- trait -
Variable in class org.metaqtl.Qtl
- The QTL trait data.
- traitNames -
Variable in class org.metaqtl.MetaQtlModel
- The trait names per chromosome.
- transformY(double) -
Method in class org.metaqtl.graph.ChromAxe
- Do a affine transformation of the given
position
d
which is assumed
to be in [0,dmax] in order to have its
representation in the chromosome axe.
- tree -
Variable in class org.metaqtl.MetaQtlResult
- The qtl tree
- tree -
Variable in class org.metaqtl.QtlPartition
- The Qtl tree.
- Tree - Class in org.metaqtl
- This class defines a tree.
- Tree() -
Constructor for class org.metaqtl.Tree
-
- Tree(TreeNode) -
Constructor for class org.metaqtl.Tree
-
- tree_method -
Variable in class org.metaqtl.algo.QtlTreeAlgorithm
- This global variable defines the method used by the aglomerative
hierarchical clustering.
- TREE_NODE_WIDTH -
Static variable in class org.metaqtl.graph.MetaGraphPar
-
- TreeFactory - Class in org.metaqtl.factory
- A factory to deal with distance trees.
- TreeFactory() -
Constructor for class org.metaqtl.factory.TreeFactory
-
- TreeNode - Class in org.metaqtl
- This class represents a node in a binary Tree obtained
when applying usual hirarchical clustering methods.
- TreeNode(int) -
Constructor for class org.metaqtl.TreeNode
- Creates a new instance of
TreeNode
with the given indice idx
.
- TreeNode(int, TreeNode[]) -
Constructor for class org.metaqtl.TreeNode
- Creates a new instance of
TreeNode
with the
given indice idx
and the children of the node.
- TreeNode() -
Constructor for class org.metaqtl.TreeNode
- Creates a new instance of
TreeNode
with
default attribute values.
- type -
Variable in class org.metaqtl.Qtl.QTLCross
- The type of the cross.
- type -
Variable in class org.thalia.bio.entity.bean.LocusBean
-
- type -
Static variable in class org.thalia.bio.util.BioCrossTypes
-
- TypesString -
Static variable in interface org.thalia.bio.IBioLocus
-
- typeToString(int) -
Static method in class org.thalia.bio.util.BioLocusTypes
-
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