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java.lang.Objectorg.metaqtl.Qtl.QTLProj
public class Qtl.QTLProj
This class stores the QTL projection properties.
Field Summary | |
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double |
intScale
The scale ratio between the original flanking marker interval and the one on the map used for projection. |
java.lang.String |
mapOrigin
The name of the map from which this QTL comes. |
double |
mapScale
The scale ratio between the original map and the map on which the QTL has been projected. |
double |
mapWeight
The cumulated scale weights of the common marke sequences between the original map and the map on which the QTL has been projected. |
int |
o_mrkIdxL
The original indice of the left flanking marker. |
int |
o_mrkIdxR
The original indice of the right flanking marker. |
int |
s_mrkIdxL
The skeleton indice of the left flanking marker. |
int |
s_mrkIdxR
The skeleton indice of the right flanking marker. |
boolean |
shareFlanking
True if the two maps share a common marker sequence around the QTL. |
boolean |
swap
True if the flanking marker order are inversed between the skeleton and the original map. |
Constructor Summary | |
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Qtl.QTLProj()
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Method Summary | |
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Qtl.QTLProj |
getCopy()
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public java.lang.String mapOrigin
public int o_mrkIdxL
public int o_mrkIdxR
public int s_mrkIdxL
public int s_mrkIdxR
public double mapScale
public double mapWeight
public double intScale
public boolean shareFlanking
public boolean swap
Constructor Detail |
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public Qtl.QTLProj()
Method Detail |
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public Qtl.QTLProj getCopy()
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