org.metaqtl
Class QtlPartition

java.lang.Object
  extended by org.metaqtl.QtlPartition

public class QtlPartition
extends java.lang.Object


Field Summary
static int HORIZONTAL_MODE
           
 int mode
          The mode of representation
 int np
          The number of partition.
 int nqtl
          The number of Qtl.
 java.lang.String[] pnames
          The partition names.
 double[][] proba
          The probabilities of each Qtl to belong to each partition.
 double[] qtlCI
          The Qtl confidence intervals.
 java.lang.String[] qtlNames
          The qtl names
 double[] qtlPos
          The Qtl positions
 Tree tree
          The Qtl tree.
static int VERTICAL_MODE
           
 
Constructor Summary
QtlPartition()
           
 
Method Summary
 java.util.ArrayList getPartNames()
           
 void rebuildPartition(java.lang.String[] pnames)
           
 void setTree(Tree tree)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

HORIZONTAL_MODE

public static final int HORIZONTAL_MODE
See Also:
Constant Field Values

VERTICAL_MODE

public static final int VERTICAL_MODE
See Also:
Constant Field Values

nqtl

public int nqtl
The number of Qtl.


np

public int np
The number of partition.


pnames

public java.lang.String[] pnames
The partition names.


qtlNames

public java.lang.String[] qtlNames
The qtl names


proba

public double[][] proba
The probabilities of each Qtl to belong to each partition.


qtlPos

public double[] qtlPos
The Qtl positions


qtlCI

public double[] qtlCI
The Qtl confidence intervals.


tree

public Tree tree
The Qtl tree.


mode

public int mode
The mode of representation

Constructor Detail

QtlPartition

public QtlPartition()
Method Detail

getPartNames

public java.util.ArrayList getPartNames()
Returns:

setTree

public void setTree(Tree tree)
Parameters:
tree -

rebuildPartition

public void rebuildPartition(java.lang.String[] pnames)
Parameters:
names -