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java.lang.Objectorg.metaqtl.MetaChrom
public class MetaChrom
A MetaChrom is the result of the merge of the members of a
ChromCluster
.
Field Summary | |
---|---|
double |
chi2
The chi-square value of this chromosome. |
double[] |
d
The absolute positions of markers in Morgan. |
int |
dof
The number of degrees of freedom. |
java.lang.String[] |
mapNames
The names of the genetic maps. |
java.lang.String[] |
mrkNames
The ordered marker names. |
int[] |
mrkOc
The number of occurence per marker oved chromosomes. |
java.lang.String |
name
The name of the meta chrom. |
int |
nc
The number of chromosomes implied. |
int |
ni
The number of marker intervals implied in this consensus. |
int |
nm
The number of markers. |
int[] |
nmc
The number of marker per implied chromosome |
double |
pvalue
The p-value of this chromosome. |
double[] |
rsd
The standardized residual between original marker intervals and those of the meta chromosome. |
double[] |
sdd
The standard deviation of the position in Morgan. |
Constructor Summary | |
---|---|
MetaChrom(MultiFitResult result,
ChromCluster chromCluster)
Get a new instance of MetaChrom which is
initialized by using the result
of the merge of the members of a ChromCluster . |
Method Summary |
---|
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public int nc
public int nm
public int ni
public int dof
public int[] nmc
public int[] mrkOc
public double chi2
public double pvalue
public double[] rsd
public double[] d
public double[] sdd
public java.lang.String name
public java.lang.String[] mapNames
public java.lang.String[] mrkNames
Constructor Detail |
---|
public MetaChrom(MultiFitResult result, ChromCluster chromCluster)
MetaChrom
which is
initialized by using the result
of the merge of the members of a ChromCluster
.
result
- the result of the merge of the members of the cluster.cluster
- the chromosome cluster.
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