Uses of Class
org.metaqtl.MetaQtlAnalysis

Packages that use MetaQtlAnalysis
org.metaqtl.adapter   
org.metaqtl.algo   
org.metaqtl.factory   
org.metaqtl.main   
 

Uses of MetaQtlAnalysis in org.metaqtl.adapter
 

Methods in org.metaqtl.adapter that return MetaQtlAnalysis
static MetaQtlAnalysis MetaQtlAnalysisAdapter.adapt(Chromosome[] chromosomes)
           
 

Methods in org.metaqtl.adapter with parameters of type MetaQtlAnalysis
static QtlPartition QtlPartitionAdapter.adapt(MetaQtlAnalysis analysis, java.lang.String chrom, java.lang.String trait, int k)
          Adapt the MetaQtlAnalysis analysis for a given value of the number of clusters k and a given trait name code.
 

Uses of MetaQtlAnalysis in org.metaqtl.algo
 

Fields in org.metaqtl.algo declared as MetaQtlAnalysis
protected  MetaQtlAnalysis ClustAlgorithm.result
          The result of the clustering.
 

Methods in org.metaqtl.algo that return MetaQtlAnalysis
 MetaQtlAnalysis ClustAlgorithm.getResult()
          When the algorithm is finished use this method to get the result.
 

Uses of MetaQtlAnalysis in org.metaqtl.factory
 

Methods in org.metaqtl.factory that return MetaQtlAnalysis
static MetaQtlAnalysis MetaQtlAnalysisFactory.read(java.io.InputStream stream)
           
static MetaQtlAnalysis MetaQtlAnalysisFactory.read(java.io.Reader reader)
           
 

Methods in org.metaqtl.factory with parameters of type MetaQtlAnalysis
static void MetaQtlAnalysisFactory.write(MetaQtlAnalysis analysis, java.io.OutputStream stream)
          This methods writes out in the given stream the results of a QTL meta-analysis.
static void MetaQtlAnalysisModelFactory.write(MetaQtlAnalysis analysis, java.io.OutputStream stream)
           
static void MetaQtlAnalysisSummaryFactory.write(MetaQtlAnalysis analysis, java.io.OutputStream stream)
          This method writes out the summary for a givene QTL meta-analysis result analysis on the given output stream stream.
static void MetaQtlAnalysisModelFactory.write(MetaQtlAnalysis analysis, java.io.Writer writer)
           
 

Uses of MetaQtlAnalysis in org.metaqtl.main
 

Methods in org.metaqtl.main that return MetaQtlAnalysis
protected static MetaQtlAnalysis MetaMain.getResult(java.lang.String resFile)
           
 

Methods in org.metaqtl.main with parameters of type MetaQtlAnalysis
static ChromGraph[] MetaMain.getChromGraph(Chromosome[] chroms, boolean withQtl, int modeQtl, IBioOntology ontology, MetaQtlAnalysis treeAnalysis)
           
static QtlPartition MetaMain.getQtlPartition(Chromosome chrom, MetaQtlAnalysis analysis, java.lang.String trait, int k, char tclust)