Uses of Package
org.metaqtl

Packages that use org.metaqtl
org.metaqtl   
org.metaqtl.adapter   
org.metaqtl.algo   
org.metaqtl.factory   
org.metaqtl.graph   
org.metaqtl.main   
 

Classes in org.metaqtl used by org.metaqtl
ChromCluster
          A cluster of chromosomes which share the same name inside a MapCluster framwork.
ChromCluster.ClusterGraph
           
Chromosome
          On a Chromosome there are two types of locus : Marker QTL (Quantitative Trait Loci) inside a mapping context which is defined by both the mapping framework (function and unit) and the population cross design used to build this chromosome.
CMarkerSequence
          A Common marker sequence between two ordered set of markers is a sub-set of at least two markers which order is the same between the two sets (may be reverse).
EMCriteria
           
EMResult
           
MetaChrom
          A MetaChrom is the result of the merge of the members of a ChromCluster.
MetaDico
          This class represents a dictionnary of synonyms.
MetaQtlModel
           
MetaQtlResult
          A MetaQtlResult is used to store the results of a QTL meta analysis which has been performed for a given trait group on a given chromosome.
MultiFitResult
          This class represents a result of a multilinear regression analysis.
Qtl
          A QTL (Quantitative Trait Loci)
Qtl.QTLCross
          This class stores the informations on the cross design used to detect the QTL.
Qtl.QTLProj
          This class stores the QTL projection properties.
Qtl.QTLStats
          This class stores the usual statistics for the QTL.
Qtl.QTLSupport
          This class stores information on the QTL Confidence Interval
Qtl.QTLTrait
          This class stores the trait description of a QTL
Tree
          This class defines a tree.
TreeNode
          This class represents a node in a binary Tree obtained when applying usual hirarchical clustering methods.
 

Classes in org.metaqtl used by org.metaqtl.adapter
Chromosome
          On a Chromosome there are two types of locus : Marker QTL (Quantitative Trait Loci) inside a mapping context which is defined by both the mapping framework (function and unit) and the population cross design used to build this chromosome.
EMResult
           
MetaMap
          A MetaMap is a bundle of MetaChrom objects.
MetaQtlAnalysis
          A QTL meta analysis consists in a clustering of QTL positions over chromosomes for different group of traits.
MetaQtlData
          QTL meta analysis first requires to gather the QTL according to the group trait they belong and then to format the QTL data into data points to perfom clustering.
MetaQtlResult
          A MetaQtlResult is used to store the results of a QTL meta analysis which has been performed for a given trait group on a given chromosome.
Qtl
          A QTL (Quantitative Trait Loci)
QtlPartition
           
 

Classes in org.metaqtl used by org.metaqtl.algo
ChromCluster
          A cluster of chromosomes which share the same name inside a MapCluster framwork.
Chromosome
          On a Chromosome there are two types of locus : Marker QTL (Quantitative Trait Loci) inside a mapping context which is defined by both the mapping framework (function and unit) and the population cross design used to build this chromosome.
CMarkerSequence
          A Common marker sequence between two ordered set of markers is a sub-set of at least two markers which order is the same between the two sets (may be reverse).
EMResult
           
IMetaAlgorithm
          This interface defines some methods which are common to data analysis algorithms.
MetaChrom
          A MetaChrom is the result of the merge of the members of a ChromCluster.
MetaDico
          This class represents a dictionnary of synonyms.
MetaMap
          A MetaMap is a bundle of MetaChrom objects.
MetaQtlAnalysis
          A QTL meta analysis consists in a clustering of QTL positions over chromosomes for different group of traits.
MetaQtlData
          QTL meta analysis first requires to gather the QTL according to the group trait they belong and then to format the QTL data into data points to perfom clustering.
MetaQtlResult
          A MetaQtlResult is used to store the results of a QTL meta analysis which has been performed for a given trait group on a given chromosome.
MultiFitResult
          This class represents a result of a multilinear regression analysis.
Tree
          This class defines a tree.
 

Classes in org.metaqtl used by org.metaqtl.factory
EMResult
           
MetaDico
          This class represents a dictionnary of synonyms.
MetaMap
          A MetaMap is a bundle of MetaChrom objects.
MetaQtlAnalysis
          A QTL meta analysis consists in a clustering of QTL positions over chromosomes for different group of traits.
MetaQtlModel
           
Tree
          This class defines a tree.
 

Classes in org.metaqtl used by org.metaqtl.graph
Chromosome
          On a Chromosome there are two types of locus : Marker QTL (Quantitative Trait Loci) inside a mapping context which is defined by both the mapping framework (function and unit) and the population cross design used to build this chromosome.
QtlPartition
           
 

Classes in org.metaqtl used by org.metaqtl.main
ChromCluster
          A cluster of chromosomes which share the same name inside a MapCluster framwork.
Chromosome
          On a Chromosome there are two types of locus : Marker QTL (Quantitative Trait Loci) inside a mapping context which is defined by both the mapping framework (function and unit) and the population cross design used to build this chromosome.
MetaDico
          This class represents a dictionnary of synonyms.
MetaQtlAnalysis
          A QTL meta analysis consists in a clustering of QTL positions over chromosomes for different group of traits.
MetaQtlModel
           
QtlPartition