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P

PaletteColor - Class in org.metaqtl.graph
 
PaletteColor() - Constructor for class org.metaqtl.graph.PaletteColor
 
parent - Variable in class org.metaqtl.TreeNode
The parent of the node
parents - Variable in class org.thalia.bio.entity.Population
 
parse(String[]) - Method in class org.metaqtl.main.CmdLineParser
Extract the options and non-option arguments from the given list of command-line arguments.
parse(String[], Locale) - Method in class org.metaqtl.main.CmdLineParser
Extract the options and non-option arguments from the given list of command-line arguments.
parseChromList(String) - Static method in class org.metaqtl.main.MetaMain
 
parseCmdLine(String[]) - Method in class org.metaqtl.main.MetaMain
 
parseCross(String) - Static method in class org.thalia.bio.util.BioCrossTypes
Parse the given string and return if valid the type of cross and the number of generations.
parseDouble(String) - Static method in class org.thalia.bio.util.NumberFormat
This method parse the given string to a double value.
parseType(String) - Static method in class org.thalia.bio.util.BioLocusTypes
 
pi - Variable in class org.metaqtl.EMResult
The mixing proportions.
pnames - Variable in class org.metaqtl.QtlPartition
The partition names.
Population - Class in org.thalia.bio.entity
Class Description Here
Population() - Constructor for class org.thalia.bio.entity.Population
 
Population(String, IBioEntity) - Constructor for class org.thalia.bio.entity.Population
 
POPULATION - Static variable in interface org.thalia.bio.IBioEntityTypes
The integer code for Population entity
POS_COMMON - Static variable in class org.metaqtl.graph.ChromLayer
 
POS_COMMON_COLOR - Static variable in class org.metaqtl.graph.MetaGraphPar
 
position - Variable in class org.metaqtl.Qtl
The QTL most probable location on the chromosome.
position - Variable in class org.thalia.bio.entity.bean.LocusBean
 
printHelp() - Method in class org.metaqtl.main.A2Xml
 
printHelp() - Method in class org.metaqtl.main.ConsMap
 
printHelp() - Method in class org.metaqtl.main.InfoMap
 
printHelp() - Method in class org.metaqtl.main.MapView
 
printHelp() - Method in class org.metaqtl.main.MetaDB
 
printHelp() - Method in class org.metaqtl.main.MetaMain
 
printHelp() - Method in class org.metaqtl.main.MMapView
 
printHelp() - Method in class org.metaqtl.main.MQTLView
 
printHelp() - Method in class org.metaqtl.main.QTLClust
 
printHelp() - Method in class org.metaqtl.main.QTLClustInfo
 
printHelp() - Method in class org.metaqtl.main.QTLModel
 
printHelp() - Method in class org.metaqtl.main.QTLProj
 
printHelp() - Method in class org.metaqtl.main.QTLTree
 
printHelp() - Method in class org.metaqtl.main.Xml2A
 
printHelp() - Method in class org.thalia.metaqtl.main.MetaCMS
 
printHelp() - Method in class org.thalia.metaqtl.main.MetaDraw
 
printHelp() - Method in class org.thalia.metaqtl.main.MetaMapDraw
 
printHelp() - Method in class org.thalia.metaqtl.main.MetaSimu
 
printHelp() - Method in class org.thalia.metaqtl.main.MetaSimuStat
 
printImgFormat(int) - Static method in class org.metaqtl.main.MetaMain
 
printLicense(String, String) - Static method in class org.metaqtl.main.MetaMain
 
printUsage() - Method in class org.metaqtl.main.A2Xml
 
printUsage() - Method in class org.metaqtl.main.ConsMap
 
printUsage() - Method in class org.metaqtl.main.InfoMap
 
printUsage() - Method in class org.metaqtl.main.MapView
 
printUsage() - Method in class org.metaqtl.main.MetaDB
 
printUsage() - Method in class org.metaqtl.main.MetaMain
 
printUsage() - Method in class org.metaqtl.main.MMapView
 
printUsage() - Method in class org.metaqtl.main.MQTLView
 
printUsage() - Method in class org.metaqtl.main.QTLClust
 
printUsage() - Method in class org.metaqtl.main.QTLClustInfo
 
printUsage() - Method in class org.metaqtl.main.QTLModel
 
printUsage() - Method in class org.metaqtl.main.QTLProj
 
printUsage() - Method in class org.metaqtl.main.QTLTree
 
printUsage() - Method in class org.metaqtl.main.Xml2A
 
printUsage() - Method in class org.thalia.metaqtl.main.MetaCMS
 
printUsage() - Method in class org.thalia.metaqtl.main.MetaDraw
 
printUsage() - Method in class org.thalia.metaqtl.main.MetaMapDraw
 
printUsage() - Method in class org.thalia.metaqtl.main.MetaSimu
 
printUsage() - Method in class org.thalia.metaqtl.main.MetaSimuStat
 
proba - Variable in class org.metaqtl.Chromosome
Probabilities defined along the chromosome.
proba - Variable in class org.metaqtl.QtlPartition
The probabilities of each Qtl to belong to each partition.
PROBA_BIN - Static variable in class org.metaqtl.graph.MetaGraphPar
 
PROBA_FROM_COLOR - Static variable in class org.metaqtl.graph.MetaGraphPar
 
PROBA_PALETTE - Static variable in class org.metaqtl.graph.MetaGraphPar
 
PROBA_TO_COLOR - Static variable in class org.metaqtl.graph.MetaGraphPar
 
proj - Variable in class org.metaqtl.Qtl
The QTL projection properties.
properties - Variable in class org.thalia.bio.entity.bean.BioEntityBean
 
PropertyBean - Class in org.thalia.bio.entity.bean
Class Description Here
PropertyBean() - Constructor for class org.thalia.bio.entity.bean.PropertyBean
 
PropertyBean(String, String) - Constructor for class org.thalia.bio.entity.bean.PropertyBean
 
PVALUE - Static variable in interface org.metaqtl.IBioLGroupProperties
The key for the p-value.
pvalue - Variable in class org.metaqtl.MetaChrom
The p-value of this chromosome.
pvalue - Variable in class org.metaqtl.MultiFitResult
The p-value of the model.
PYTHAG(double, double) - Static method in class org.metaqtl.numrec.NumericalUtilities
Computes sqrt(a^2+b^2)

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