Constant Field Values


Contents
org.metaqtl.*

org.metaqtl.EMCriteria
public static final int AIC 0
public static final java.lang.String AIC_NAME "AIC"
public static final int AIC3 1
public static final java.lang.String AIC3_NAME "AIC3"
public static final int AICc 5
public static final java.lang.String AICc_NAME "AICc"
public static final int AWE 4
public static final java.lang.String AWE_NAME "AWE"
public static final int BIC 3
public static final java.lang.String BIC_NAME "BIC"
public static final int ICOMP 2
public static final java.lang.String ICOMP_NAME "ICOMP"

org.metaqtl.IBioGenomeProperties
public static final java.lang.String CROSS_SIZE "cross.size"
public static final java.lang.String CROSS_TYPE "cross.type"
public static final java.lang.String MAPPING_CROSS "mapping.cross"
public static final java.lang.String MAPPING_EXPANSION "mapping.expansion"
public static final java.lang.String MAPPING_FUNCTION "mapping.function"
public static final java.lang.String MAPPING_FUNCTION_HALDANE "haldane"
public static final java.lang.String MAPPING_FUNCTION_KOSAMBI "kosambi"
public static final java.lang.String MAPPING_UNIT "mapping.unit"
public static final java.lang.String MAPPING_UNIT_CM "cM"
public static final java.lang.String MAPPING_UNIT_M "M"

org.metaqtl.IBioLGroupProperties
public static final java.lang.String CHISQUARE "meta.chisquare"
public static final java.lang.String DOF "meta.dof"
public static final java.lang.String PVALUE "meta.pvalue"

org.metaqtl.IBioLocusProperties
public static final java.lang.String DUBIOUS_ORDER "dubious.order"
public static final java.lang.String OCCURENCE "meta.occurence"
public static final java.lang.String QTL_CI_FROM "qtl.ci.from"
public static final java.lang.String QTL_CI_LOD_DECREASE "qtl.ci.lod.decrease"
public static final java.lang.String QTL_CI_TO "qtl.ci.to"
public static final java.lang.String QTL_CROSS_NAME "qtl.cross.name"
public static final java.lang.String QTL_CROSS_SIZE "qtl.cross.size"
public static final java.lang.String QTL_CROSS_TYPE "qtl.cross.type"
public static final java.lang.String QTL_PROJ_INTSCALE "qtl.proj.intScale"
public static final java.lang.String QTL_PROJ_MAPSCALE "qtl.proj.mapScale"
public static final java.lang.String QTL_PROJ_ORIGIN "qtl.proj.mapOrigin"
public static final java.lang.String QTL_PROJ_SHAREFLANKING "qtl.proj.shareFlanking"
public static final java.lang.String QTL_PROJ_SWAPFLANKING "qtl.proj.swapFlanking"
public static final java.lang.String QTL_STATS_ADDITIVE "qtl.effect.additive"
public static final java.lang.String QTL_STATS_DOMINANCE "qtl.effect.dominance"
public static final java.lang.String QTL_STATS_RSQUARE "qtl.rsquare"
public static final java.lang.String QTL_TRAIT_GROUP "qtl.trait.group"
public static final java.lang.String QTL_TRAIT_NAME "qtl.trait.name"
public static final java.lang.String QTL_TRAIT_UNIT "qtl.trait.unit"

org.metaqtl.IMetaQtlConstants
public static final int CI_MISS_IGNORE 2
public static final int CI_MISS_IMPUTATION 1
public static final int CI_MODE_AVAILABLE 1
public static final int CI_MODE_LOD 2
public static final int CI_MODE_MAXIMAL 4
public static final int CI_MODE_RSQUARE 3
public static final int MAPPING_FUNCTION_HALDANE 1
public static final int MAPPING_FUNCTION_KOSAMBI 2
public static final int MAPPING_FUNCTION_UNKNOWN 0
public static final int MAPPING_UNIT_CM 2
public static final int MAPPING_UNIT_M 1
public static final int MAPPING_UNIT_UNKNOWN 0
public static final double TINY_MAPPING_DISTANCE 1.0E-5
public static final double TINY_MAPPING_VARIANCE 1.0E-32
public static final java.lang.String VERSION "1.0"

org.metaqtl.QtlPartition
public static final int HORIZONTAL_MODE 0
public static final int VERTICAL_MODE 1

org.metaqtl.algo.EMAlgorithm
public static final int EM_CONTINUE 1
public static final int EM_FAILURE 2
public static final int EM_OK 0
public static final double TINY_Z_PROBA 4.9E-324

org.metaqtl.algo.HClustAlgorithm
public static final int CENTROID_METHOD 1
public static final int WARD_METHOD 2

org.metaqtl.bio.IBioCrossTypes
public static final int BC 1
public static final int DH 6
public static final int IRISe 7
public static final int IRISi 8
public static final int RF 5
public static final int RILSe 2
public static final int RILSi 3
public static final int SF 4
public static final int UNKNOWN 0

org.metaqtl.bio.IBioEntityTypes
public static final int ALLELE 8
public static final int COLLECTION 9
public static final int GENOME 3
public static final int INDIVIDUAL 1
public static final int LGROUP 4
public static final int LOCUS 5
public static final int MARKERLOCUS 6
public static final int ONTOLOGY 11
public static final int ONTOLOGY_TERM 10
public static final int POPULATION 2
public static final int QTLLOCUS 7

org.metaqtl.bio.IBioLocus
public static final int MARKER 0
public static final int QTL 1

org.metaqtl.bio.IOntologyTermProperties
public static final java.lang.String DEFINITION "term.definition"
public static final java.lang.String SYNONYMS "term.synonyms"

org.metaqtl.bio.entity.IGeneticMapProperties
public static final java.lang.String cartoFunctionHaldane "haldane"
public static final java.lang.String cartoFunctionKey "carto.function"
public static final java.lang.String cartoFunctionKosambi "kosambi"
public static final java.lang.String distanceUnitCM "cM"
public static final java.lang.String distanceUnitKey "distance.unit"

org.metaqtl.bio.util.ILGroupPosition
public static final int ESTIMATED 2
public static final int STATIC 1

org.metaqtl.factory.MetaQtlModelFactory
public static final java.lang.String SEPARATOR "\t"

org.metaqtl.graph.ChromLayer
public static final int ALIGN_FIRST_COMMON 0
public static final int ALIGN_FIRST_MARKER 1
public static final int LEFT_LABEL 1
public static final int NEG_COMMON 1
public static final int POS_COMMON 0
public static final int RIGHT_LABEL 0
public static final int SINGLE_COMMON 2

org.metaqtl.graph.ChromShape
public static final int LEFT_LABEL 1
public static final int RIGHT_LABEL 0

org.metaqtl.util.OffspringManager.HaldaneWaddingtonProportion
public static final double C_coeff 1.0
public static final double D_coeff 1.0
public static final double E_coeff 2.0
public static final double F_coeff 0.5
public static final double G_coeff 0.5