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Packages that use IBioEntity | |
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org.metaqtl.bio | |
org.metaqtl.bio.entity | |
org.metaqtl.bio.entity.adapter | |
org.metaqtl.bio.entity.factory |
Uses of IBioEntity in org.metaqtl.bio |
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Subinterfaces of IBioEntity in org.metaqtl.bio | |
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interface |
IBioAllele
Class Description Here |
interface |
IBioCross
Class Description Here |
interface |
IBioGenome
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interface |
IBioIndividual
Class Description Here |
interface |
IBioLGroup
|
interface |
IBioLocus
|
interface |
IBioOntology
This interface defines some rules to handle a ontology. |
interface |
IBioOntologyTerm
This class defines a term of an ontology. |
interface |
IBioPopulation
Class Description Here |
Methods in org.metaqtl.bio that return IBioEntity | |
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IBioEntity |
IBioEntity.getParent()
Returns the entity that handles this entity. |
IBioEntity |
IBioAdapter.toEntity(java.lang.Object obj)
Convert the given bio entity object into another compliant object. |
Methods in org.metaqtl.bio with parameters of type IBioEntity | |
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java.lang.Object |
IBioAdapter.fromEntity(IBioEntity obj)
Convert the given compliant object to a bio entity object. |
Uses of IBioEntity in org.metaqtl.bio.entity |
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Classes in org.metaqtl.bio.entity that implement IBioEntity | |
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class |
AlleleContainer
Class Description Here |
class |
BioEntity
Class Description Here |
class |
BioEntityCollection
Class Description Here |
class |
BioEntityContainer
Class Description Here |
class |
CrossPopulation
Class Description Here |
class |
GeneticMap
Class Description Here |
class |
GroupContainer
Class Description Here |
class |
Individual
Class Description Here |
class |
IndividualContainer
Class Description Here |
class |
LGroup
Class Description Here |
class |
Locus
|
class |
LocusContainer
Class Description Here |
class |
Marker
Class Description Here |
class |
Ontology
|
class |
OntologyTerm
|
class |
Population
Class Description Here |
class |
QTL
Class Description Here |
Fields in org.metaqtl.bio.entity declared as IBioEntity | |
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protected IBioEntity |
BioEntity.parent
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protected IBioEntity |
BioEntityCollection.parent
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Methods in org.metaqtl.bio.entity that return IBioEntity | |
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protected IBioEntity[] |
BioEntityContainer.entities()
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protected IBioEntity |
BioEntityContainer.getEntity(java.lang.String name)
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IBioEntity |
BioEntity.getParent()
|
IBioEntity |
BioEntityCollection.getParent()
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static IBioEntity |
BioEntity.newBioEntity(int type)
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Methods in org.metaqtl.bio.entity with parameters of type IBioEntity | |
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protected void |
BioEntityContainer.addEntity(IBioEntity entity)
|
static Population |
Population.newCrossPopulation(int type,
java.lang.String name,
IBioEntity parent)
|
Constructors in org.metaqtl.bio.entity with parameters of type IBioEntity | |
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AlleleContainer(java.lang.String name,
IBioEntity parent)
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BioEntity(java.lang.String name,
IBioEntity parent)
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BioEntityContainer(java.lang.String name,
IBioEntity parent)
|
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CrossPopulation(java.lang.String name,
IBioEntity parent)
|
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CrossPopulation(java.lang.String name,
IBioEntity parent,
int type)
|
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GeneticMap(java.lang.String name,
IBioEntity parent)
|
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GroupContainer(java.lang.String name,
IBioEntity parent)
|
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Individual(java.lang.String name,
IBioEntity parent)
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IndividualContainer(java.lang.String name,
IBioEntity parent)
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LGroup(java.lang.String name,
IBioEntity parent)
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Locus(java.lang.String name,
IBioEntity parent)
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LocusContainer(java.lang.String name,
IBioEntity parent)
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Marker(java.lang.String name,
IBioEntity parent)
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Population(java.lang.String name,
IBioEntity parent)
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QTL(java.lang.String name,
IBioEntity parent)
|
Uses of IBioEntity in org.metaqtl.bio.entity.adapter |
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Methods in org.metaqtl.bio.entity.adapter that return IBioEntity | |
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IBioEntity |
BioEntityCollectionAdapter.toEntity(java.lang.Object bean)
|
IBioEntity |
GeneticMapBeanAdapter.toEntity(java.lang.Object bean)
|
IBioEntity |
LGroupBeanAdapter.toEntity(java.lang.Object bean)
|
IBioEntity |
LocusBeanAdapter.toEntity(java.lang.Object bean)
|
IBioEntity |
OntologyBeanAdapter.toEntity(java.lang.Object obj)
|
IBioEntity |
OntologyTermBeanAdapter.toEntity(java.lang.Object obj)
|
Methods in org.metaqtl.bio.entity.adapter with parameters of type IBioEntity | |
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java.lang.Object |
BioEntityCollectionAdapter.fromEntity(IBioEntity obj)
|
java.lang.Object |
GeneticMapBeanAdapter.fromEntity(IBioEntity obj)
|
java.lang.Object |
LGroupBeanAdapter.fromEntity(IBioEntity obj)
|
java.lang.Object |
LocusBeanAdapter.fromEntity(IBioEntity obj)
|
java.lang.Object |
OntologyBeanAdapter.fromEntity(IBioEntity obj)
|
java.lang.Object |
OntologyTermBeanAdapter.fromEntity(IBioEntity obj)
|
static void |
BioEntityAdapter.fromEntity(IBioEntity entity,
BioEntityBean bean)
|
static void |
BioEntityAdapter.toEntity(BioEntityBean bean,
IBioEntity entity)
|
Uses of IBioEntity in org.metaqtl.bio.entity.factory |
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Methods in org.metaqtl.bio.entity.factory that return IBioEntity | |
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abstract IBioEntity |
BioEntityFactory.load(java.io.InputStream stream)
|
IBioEntity |
MapChartFactory.load(java.io.InputStream stream)
TODO (non-Javadoc) |
IBioEntity |
MapMakerFactory.load(java.io.InputStream stream)
|
IBioEntity |
MapRawFactory.load(java.io.InputStream inputStream)
|
IBioEntity |
MapTabFactory.load(java.io.InputStream stream)
|
IBioEntity |
OntologyTabFactory.load(java.io.InputStream inputStream)
|
IBioEntity |
XmlBioEntityFactory.load(java.io.InputStream stream)
|
abstract IBioEntity |
BioEntityFactory.load(java.io.Reader reader)
|
IBioEntity |
MapChartFactory.load(java.io.Reader reader)
TODO (non-Javadoc) |
IBioEntity |
MapMakerFactory.load(java.io.Reader reader)
|
IBioEntity |
MapRawFactory.load(java.io.Reader reader)
|
IBioEntity |
MapTabFactory.load(java.io.Reader reader)
|
IBioEntity |
OntologyTabFactory.load(java.io.Reader reader)
Term_id : the term identifient. |
IBioEntity |
XmlBioEntityFactory.load(java.io.Reader reader)
|
Methods in org.metaqtl.bio.entity.factory with parameters of type IBioEntity | |
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abstract void |
BioEntityFactory.unload(IBioEntity entity,
java.io.OutputStream stream)
|
void |
MapChartFactory.unload(IBioEntity obj,
java.io.OutputStream stream)
TODO (non-Javadoc) |
void |
MapMakerFactory.unload(IBioEntity entity,
java.io.OutputStream stream)
|
void |
MapRawFactory.unload(IBioEntity entity,
java.io.OutputStream stream)
|
void |
MapTabFactory.unload(IBioEntity entity,
java.io.OutputStream stream)
|
void |
OntologyTabFactory.unload(IBioEntity entity,
java.io.OutputStream stream)
|
void |
XmlBioEntityFactory.unload(IBioEntity obj,
java.io.OutputStream stream)
|
abstract void |
BioEntityFactory.unload(IBioEntity entity,
java.io.Writer writer)
|
void |
MapChartFactory.unload(IBioEntity obj,
java.io.Writer w)
TODO (non-Javadoc) |
void |
MapMakerFactory.unload(IBioEntity obj,
java.io.Writer w)
|
void |
MapRawFactory.unload(IBioEntity entity,
java.io.Writer writer)
|
void |
MapTabFactory.unload(IBioEntity obj,
java.io.Writer writer)
|
void |
OntologyTabFactory.unload(IBioEntity entity,
java.io.Writer writer)
|
void |
XmlBioEntityFactory.unload(IBioEntity obj,
java.io.Writer writer)
|
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