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java.lang.Objectorg.metaqtl.graph.MetaGraphPar
public final class MetaGraphPar
Field Summary | |
---|---|
static java.awt.Color |
BACKGROUND_COLOR
The color of the backgroud. |
static int |
CHROM_ALIGN_MODE
|
static double |
CHROM_DISTANCE_SCALE
|
static double |
CHROM_FLANKING_CEX
The default cex parameter for flanking regions at the top and the end of the chromosome. |
static java.awt.Font |
CHROM_NAME_FONT
|
static double |
CHROM_NAME_HSPACE
|
static java.awt.Stroke |
CHROM_STROKE
The stroke of the chromosome shape. |
static java.awt.Color |
CHROM_STROKE_COLOR
The color of the stroke of the Chromosome shape. |
static java.awt.Color |
CHROM_TICK_COLOR
The color of the marker ticks on the chromosome. |
static java.awt.Stroke |
CHROM_TICK_STROKE
|
static double |
CHROM_TICK_WIDTH_1
The width of the marker ticks. |
static double |
CHROM_TICK_WIDTH_2
|
static double |
CHROM_TICK_WIDTH_3
|
static double |
CHROM_WIDTH
The width of the chromosome. |
static double |
COMMON_STROKE_WIDTH
|
static double |
DEFAULT_HEIGHT
The default height. |
static double |
DEFAULT_WIDTH
The default width. |
static double |
LAYER_HSPACE
The horizontal space between layers. |
static double |
LAYER_VSPACE
The vertical space between layers. |
static double |
LEGEND_BOX_CEX
|
static java.awt.Font |
LEGEND_FONT
|
static double |
LEGEND_GRAD_HEIGHT
|
static double |
LEGEND_GRAD_WIDTH
|
static double |
LEGEND_HSPACE
|
static double |
LEGEND_PART_HEIGHT
|
static double |
LEGEND_PART_WIDTH
|
static int |
LEGEND_SCALE_UNIT
|
static double |
MAKER_NAME_VSPACE
|
static java.awt.Font |
MARKER_NAME_FONT
|
static java.awt.Font |
MARKER_POSITION_FONT
|
static java.awt.Color |
NEG_COMMON_COLOR
|
static java.awt.Color |
POS_COMMON_COLOR
|
static int |
PROBA_BIN
|
static java.awt.Color |
PROBA_FROM_COLOR
|
static java.awt.Color[] |
PROBA_PALETTE
|
static java.awt.Color |
PROBA_TO_COLOR
|
static double |
QTL_CI_WIDTH
|
static double |
QTL_CI_WIDTH_CEX
|
static double |
QTL_HSPACE
The horizontal space between Qtl shapes. |
static java.awt.Color |
QTL_NAME_COLOR
The color of the QTL names. |
static java.awt.Font |
QTL_NAME_FONT
The font used for the Qtl names. |
static double |
QTL_NAME_SPACE
|
static double |
QTL_NAME_VSPACE_CEX
The space magnification between the Qtl name and the Qtl confidence interval. |
static java.awt.Color[] |
QTL_PALETTE
The color palete for the QTL partition. |
static double |
QTL_PCH_SIZE
|
static double |
QTL_POS_HEIGHT_CEX
|
static double |
QTL_POS_WIDTH_CEX
|
static double |
QTL_PROB_WIDTH
|
static double |
QTL_TICK_WIDTH_CEX
The magnification for the tick of the QTL. |
static double |
QTL_TREE_SCALE
|
static double |
QTL_TREE_SPACE
|
static double |
QTL_VSPACE
The vertical space between Qtl shapes. |
static java.awt.Color |
SINGLE_COMMON_COLOR
|
static double |
TREE_NODE_WIDTH
|
static boolean |
WITH_CHROM_NAME
|
static boolean |
WITH_COMMON_MARKER
|
static boolean |
WITH_LEGEND
|
static boolean |
WITH_MAP_NAME
|
static boolean |
WITH_MARKER_NAME
|
static boolean |
WITH_MARKER_POSITION
|
static boolean |
WITH_QTL_NAME
Add the Qtl name. |
Method Summary | |
---|---|
static java.lang.String |
color2string(java.awt.Color color)
|
static java.lang.String |
font2string(java.awt.Font font)
|
static java.awt.Color |
getProbaColor(double d)
|
static java.awt.Color |
getProbaColor(double d,
double thresh)
|
static void |
initPalettes()
|
static void |
initProbaPalette()
|
static void |
initQTLPalette()
|
static void |
initQTLPalette(int n)
|
static void |
set(java.lang.String parameter,
java.lang.String value)
|
static java.awt.Color |
string2color(java.lang.String value)
|
static java.awt.Font |
string2font(java.lang.String value)
|
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static double LAYER_HSPACE
public static double LAYER_VSPACE
public static double DEFAULT_WIDTH
public static double DEFAULT_HEIGHT
public static java.awt.Color BACKGROUND_COLOR
public static double QTL_VSPACE
public static double QTL_HSPACE
public static double QTL_TREE_SPACE
public static double TREE_NODE_WIDTH
public static boolean WITH_QTL_NAME
public static java.awt.Font QTL_NAME_FONT
public static java.awt.Font MARKER_NAME_FONT
public static java.awt.Font MARKER_POSITION_FONT
public static java.awt.Font CHROM_NAME_FONT
public static java.awt.Color QTL_NAME_COLOR
public static double QTL_NAME_VSPACE_CEX
public static boolean WITH_MAP_NAME
public static boolean WITH_CHROM_NAME
public static double QTL_PCH_SIZE
public static boolean WITH_LEGEND
public static double QTL_TICK_WIDTH_CEX
public static java.awt.Color[] QTL_PALETTE
public static java.awt.Color[] PROBA_PALETTE
public static int PROBA_BIN
public static double CHROM_WIDTH
public static double QTL_CI_WIDTH
public static double CHROM_NAME_HSPACE
public static boolean WITH_MARKER_NAME
public static int CHROM_ALIGN_MODE
public static boolean WITH_MARKER_POSITION
public static double CHROM_FLANKING_CEX
public static java.awt.Stroke CHROM_STROKE
BasicStroke
public static java.awt.Stroke CHROM_TICK_STROKE
public static double MAKER_NAME_VSPACE
public static java.awt.Color CHROM_STROKE_COLOR
public static double CHROM_TICK_WIDTH_1
public static double CHROM_TICK_WIDTH_2
public static double CHROM_TICK_WIDTH_3
public static double QTL_POS_HEIGHT_CEX
public static double QTL_POS_WIDTH_CEX
public static java.awt.Color CHROM_TICK_COLOR
public static double QTL_NAME_SPACE
public static double CHROM_DISTANCE_SCALE
public static double QTL_CI_WIDTH_CEX
public static double QTL_PROB_WIDTH
public static java.awt.Font LEGEND_FONT
public static double LEGEND_PART_HEIGHT
public static double LEGEND_PART_WIDTH
public static double LEGEND_HSPACE
public static double LEGEND_BOX_CEX
public static int LEGEND_SCALE_UNIT
public static boolean WITH_COMMON_MARKER
public static java.awt.Color PROBA_FROM_COLOR
public static java.awt.Color PROBA_TO_COLOR
public static java.awt.Color SINGLE_COMMON_COLOR
public static java.awt.Color POS_COMMON_COLOR
public static java.awt.Color NEG_COMMON_COLOR
public static double COMMON_STROKE_WIDTH
public static double LEGEND_GRAD_HEIGHT
public static double LEGEND_GRAD_WIDTH
public static double QTL_TREE_SCALE
Method Detail |
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public static void set(java.lang.String parameter, java.lang.String value) throws java.lang.IllegalArgumentException
parameter
- value
-
java.lang.IllegalArgumentException
public static java.awt.Color string2color(java.lang.String value)
value
-
public static java.lang.String color2string(java.awt.Color color)
public static java.awt.Font string2font(java.lang.String value)
value
-
public static java.lang.String font2string(java.awt.Font font)
font
-
public static java.awt.Color getProbaColor(double d)
d
-
public static java.awt.Color getProbaColor(double d, double thresh)
d
-
public static void initProbaPalette()
public static void initQTLPalette()
public static void initQTLPalette(int n)
public static void initPalettes()
|
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