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PaletteColor
- Class in
org.metaqtl.graph
PaletteColor()
- Constructor for class org.metaqtl.graph.
PaletteColor
parent
- Variable in class org.metaqtl.
TreeNode
The parent of the node
parents
- Variable in class org.thalia.bio.entity.
Population
parse(String[])
- Method in class org.metaqtl.main.
CmdLineParser
Extract the options and non-option arguments from the given list of command-line arguments.
parse(String[], Locale)
- Method in class org.metaqtl.main.
CmdLineParser
Extract the options and non-option arguments from the given list of command-line arguments.
parseChromList(String)
- Static method in class org.metaqtl.main.
MetaMain
parseCmdLine(String[])
- Method in class org.metaqtl.main.
MetaMain
parseCross(String)
- Static method in class org.thalia.bio.util.
BioCrossTypes
Parse the given string and return if valid the type of cross and the number of generations.
parseDouble(String)
- Static method in class org.thalia.bio.util.
NumberFormat
This method parse the given string to a double value.
parseType(String)
- Static method in class org.thalia.bio.util.
BioLocusTypes
pi
- Variable in class org.metaqtl.
EMResult
The mixing proportions.
pnames
- Variable in class org.metaqtl.
QtlPartition
The partition names.
Population
- Class in
org.thalia.bio.entity
Class Description Here
Population()
- Constructor for class org.thalia.bio.entity.
Population
Population(String, IBioEntity)
- Constructor for class org.thalia.bio.entity.
Population
POPULATION
- Static variable in interface org.thalia.bio.
IBioEntityTypes
The integer code for Population entity
POS_COMMON
- Static variable in class org.metaqtl.graph.
ChromLayer
POS_COMMON_COLOR
- Static variable in class org.metaqtl.graph.
MetaGraphPar
position
- Variable in class org.metaqtl.
Qtl
The QTL most probable location on the chromosome.
position
- Variable in class org.thalia.bio.entity.bean.
LocusBean
printHelp()
- Method in class org.metaqtl.main.
A2Xml
printHelp()
- Method in class org.metaqtl.main.
ConsMap
printHelp()
- Method in class org.metaqtl.main.
InfoMap
printHelp()
- Method in class org.metaqtl.main.
MapView
printHelp()
- Method in class org.metaqtl.main.
MetaDB
printHelp()
- Method in class org.metaqtl.main.
MetaMain
printHelp()
- Method in class org.metaqtl.main.
MMapView
printHelp()
- Method in class org.metaqtl.main.
MQTLView
printHelp()
- Method in class org.metaqtl.main.
QTLClust
printHelp()
- Method in class org.metaqtl.main.
QTLClustInfo
printHelp()
- Method in class org.metaqtl.main.
QTLModel
printHelp()
- Method in class org.metaqtl.main.
QTLProj
printHelp()
- Method in class org.metaqtl.main.
QTLTree
printHelp()
- Method in class org.metaqtl.main.
Xml2A
printHelp()
- Method in class org.thalia.metaqtl.main.
MetaCMS
printHelp()
- Method in class org.thalia.metaqtl.main.
MetaDraw
printHelp()
- Method in class org.thalia.metaqtl.main.
MetaMapDraw
printHelp()
- Method in class org.thalia.metaqtl.main.
MetaSimu
printHelp()
- Method in class org.thalia.metaqtl.main.
MetaSimuStat
printImgFormat(int)
- Static method in class org.metaqtl.main.
MetaMain
printLicense(String, String)
- Static method in class org.metaqtl.main.
MetaMain
printUsage()
- Method in class org.metaqtl.main.
A2Xml
printUsage()
- Method in class org.metaqtl.main.
ConsMap
printUsage()
- Method in class org.metaqtl.main.
InfoMap
printUsage()
- Method in class org.metaqtl.main.
MapView
printUsage()
- Method in class org.metaqtl.main.
MetaDB
printUsage()
- Method in class org.metaqtl.main.
MetaMain
printUsage()
- Method in class org.metaqtl.main.
MMapView
printUsage()
- Method in class org.metaqtl.main.
MQTLView
printUsage()
- Method in class org.metaqtl.main.
QTLClust
printUsage()
- Method in class org.metaqtl.main.
QTLClustInfo
printUsage()
- Method in class org.metaqtl.main.
QTLModel
printUsage()
- Method in class org.metaqtl.main.
QTLProj
printUsage()
- Method in class org.metaqtl.main.
QTLTree
printUsage()
- Method in class org.metaqtl.main.
Xml2A
printUsage()
- Method in class org.thalia.metaqtl.main.
MetaCMS
printUsage()
- Method in class org.thalia.metaqtl.main.
MetaDraw
printUsage()
- Method in class org.thalia.metaqtl.main.
MetaMapDraw
printUsage()
- Method in class org.thalia.metaqtl.main.
MetaSimu
printUsage()
- Method in class org.thalia.metaqtl.main.
MetaSimuStat
proba
- Variable in class org.metaqtl.
Chromosome
Probabilities defined along the chromosome.
proba
- Variable in class org.metaqtl.
QtlPartition
The probabilities of each Qtl to belong to each partition.
PROBA_BIN
- Static variable in class org.metaqtl.graph.
MetaGraphPar
PROBA_FROM_COLOR
- Static variable in class org.metaqtl.graph.
MetaGraphPar
PROBA_PALETTE
- Static variable in class org.metaqtl.graph.
MetaGraphPar
PROBA_TO_COLOR
- Static variable in class org.metaqtl.graph.
MetaGraphPar
proj
- Variable in class org.metaqtl.
Qtl
The QTL projection properties.
properties
- Variable in class org.thalia.bio.entity.bean.
BioEntityBean
PropertyBean
- Class in
org.thalia.bio.entity.bean
Class Description Here
PropertyBean()
- Constructor for class org.thalia.bio.entity.bean.
PropertyBean
PropertyBean(String, String)
- Constructor for class org.thalia.bio.entity.bean.
PropertyBean
PVALUE
- Static variable in interface org.metaqtl.
IBioLGroupProperties
The key for the p-value.
pvalue
- Variable in class org.metaqtl.
MetaChrom
The p-value of this chromosome.
pvalue
- Variable in class org.metaqtl.
MultiFitResult
The p-value of the model.
PYTHAG(double, double)
- Static method in class org.metaqtl.numrec.
NumericalUtilities
Computes sqrt(a^2+b^2)
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