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label
- Variable in class org.metaqtl.
TreeNode
The label of the cluster
Layer
- Class in
org.metaqtl.graph
Layer(double, double)
- Constructor for class org.metaqtl.graph.
Layer
Creates a layer without any width and heigth constraints which upper left corner will be located at the point (x,y).
LAYER_HSPACE
- Static variable in class org.metaqtl.graph.
MetaGraphPar
The horizontal space between layers.
LAYER_VSPACE
- Static variable in class org.metaqtl.graph.
MetaGraphPar
The vertical space between layers.
leaf
- Variable in class org.metaqtl.
TreeNode
The status of the node.
LEFT_LABEL
- Static variable in class org.metaqtl.graph.
ChromLayer
LEFT_LABEL
- Static variable in class org.metaqtl.graph.
ChromShape
LEGEND_BOX_CEX
- Static variable in class org.metaqtl.graph.
MetaGraphPar
LEGEND_FONT
- Static variable in class org.metaqtl.graph.
MetaGraphPar
LEGEND_GRAD_HEIGHT
- Static variable in class org.metaqtl.graph.
MetaGraphPar
LEGEND_GRAD_WIDTH
- Static variable in class org.metaqtl.graph.
MetaGraphPar
LEGEND_HSPACE
- Static variable in class org.metaqtl.graph.
MetaGraphPar
LEGEND_PART_HEIGHT
- Static variable in class org.metaqtl.graph.
MetaGraphPar
LEGEND_PART_WIDTH
- Static variable in class org.metaqtl.graph.
MetaGraphPar
LEGEND_SCALE_UNIT
- Static variable in class org.metaqtl.graph.
MetaGraphPar
legendLayer
- Variable in class org.metaqtl.graph.
MetaGraph
LGroup
- Class in
org.thalia.bio.entity
Class Description Here
LGroup()
- Constructor for class org.thalia.bio.entity.
LGroup
LGroup(String, IBioEntity)
- Constructor for class org.thalia.bio.entity.
LGroup
LGROUP
- Static variable in interface org.thalia.bio.
IBioEntityTypes
The integer code for Linkage Group entity
LGroupBean
- Class in
org.thalia.bio.entity.bean
Class Description Here
LGroupBean()
- Constructor for class org.thalia.bio.entity.bean.
LGroupBean
LGroupBeanAdapter
- Class in
org.thalia.bio.entity.adapter
Class Description Here
LGroupBeanAdapter()
- Constructor for class org.thalia.bio.entity.adapter.
LGroupBeanAdapter
LGroupPosition
- Class in
org.thalia.bio.util
Class Description Here
LGroupPosition(double)
- Constructor for class org.thalia.bio.util.
LGroupPosition
LGroupPosition(double, double)
- Constructor for class org.thalia.bio.util.
LGroupPosition
load(Reader)
- Method in class org.thalia.bio.entity.factory.
BioEntityFactory
load(InputStream)
- Method in class org.thalia.bio.entity.factory.
BioEntityFactory
load(Reader)
- Method in class org.thalia.bio.entity.factory.
MapChartFactory
TODO (non-Javadoc)
load(InputStream)
- Method in class org.thalia.bio.entity.factory.
MapChartFactory
TODO (non-Javadoc)
load(Reader)
- Method in class org.thalia.bio.entity.factory.
MapMakerFactory
load(InputStream)
- Method in class org.thalia.bio.entity.factory.
MapMakerFactory
load(InputStream)
- Method in class org.thalia.bio.entity.factory.
MapRawFactory
load(Reader)
- Method in class org.thalia.bio.entity.factory.
MapRawFactory
load(Reader)
- Method in class org.thalia.bio.entity.factory.
MapTabFactory
load(InputStream)
- Method in class org.thalia.bio.entity.factory.
MapTabFactory
load(InputStream)
- Method in class org.thalia.bio.entity.factory.
OntologyTabFactory
load(Reader)
- Method in class org.thalia.bio.entity.factory.
OntologyTabFactory
Term_id : the term identifient.
load(InputStream)
- Method in class org.thalia.bio.entity.factory.
XmlBioEntityFactory
load(Reader)
- Method in class org.thalia.bio.entity.factory.
XmlBioEntityFactory
loci()
- Method in class org.thalia.bio.entity.
LocusContainer
loci()
- Method in interface org.thalia.bio.
IBioLGroup
locus
- Variable in class org.thalia.bio.entity.bean.
LGroupBean
Locus
- Class in
org.thalia.bio.entity
Locus()
- Constructor for class org.thalia.bio.entity.
Locus
Locus(String, IBioEntity)
- Constructor for class org.thalia.bio.entity.
Locus
LOCUS
- Static variable in interface org.thalia.bio.
IBioEntityTypes
The integer code for Locus entity
LocusBean
- Class in
org.thalia.bio.entity.bean
Class Description Here
LocusBean()
- Constructor for class org.thalia.bio.entity.bean.
LocusBean
LocusBeanAdapter
- Class in
org.thalia.bio.entity.adapter
Class Description Here
LocusBeanAdapter()
- Constructor for class org.thalia.bio.entity.adapter.
LocusBeanAdapter
LocusContainer
- Class in
org.thalia.bio.entity
Class Description Here
LocusContainer()
- Constructor for class org.thalia.bio.entity.
LocusContainer
LocusContainer(String, IBioEntity)
- Constructor for class org.thalia.bio.entity.
LocusContainer
locusNames
- Variable in class org.metaqtl.
ChromCluster
Ths locus name index table
LocusPositionComparator
- Class in
org.thalia.bio.util
Class Description Here
LocusProperties
- Class in
org.metaqtl.util
LocusProperties()
- Constructor for class org.metaqtl.util.
LocusProperties
lod
- Variable in class org.metaqtl.
Qtl.QTLStats
The lod score of the QTL.
lodDecrease
- Variable in class org.metaqtl.
Qtl.QTLSupport
The value of the LOD decrease used to obtain the CI.
longForm()
- Method in class org.metaqtl.main.
CmdLineParser.Option
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