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Rat p53 SSSVPSQKTYQGNYGFHLGFLQSGTAKSVMCTYSISLNKLFCQLAKTCPVQLWVTSTPPP 151 Hamster p53 SSSVPSYKTFQGDYGFRLGFLHSGTAKSVTCTYSPSLNKLFCQLAKTCPVQLWVNSTPPP 153 Cat p53 SSFVPSQKTYPGAYGFHLGFLQSGTAKSVTCTYSPPLNKLFCQLAKTCPVQLWVRSPPPP 145 Zebrafish p53 TSTVPETSDYPGDHGFRLRFPQSGTAKSVTCTYSPDLNKLFCQLAKTCPVQMVVDVAPPQ 121 Xenopus p53 SCAVPSTDDYAGKYGLQLDFQQNGTAKSVTCTYSPELNKLFCQLAKTCPLLVRVESPPPR 127 Human p53 SSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPP 153 ============================================================ Human p53 SSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPP 153 Marmot p53 GTRVRAMAIYKKSQHMTEVVRRCPHHERCSDS-DGLAPPQHLIRVEGNLRAEYLDDRNTF
210
Marmot p53 RHSVVVPYEPPEVGSECTTIHYNYMCNSSCMGGMNRRPILTIITLEGSSGNLLGRNSFEV
270
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Sample output of COMBOSA3D showing a colored three-dimensional representation of p53 (Cho et al., 1994) binding to DNA. The colored reference alignment produced by COMBOSA3D is also given. Residues that are identical among the comparison sequences (the sequences located above the row of equal signs) are colored dark blue, while similar residues are colored light blue. Residues that are not identical or similar among 80% of the sequences are colored red. |